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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038359 ID=TCONS_00038359|Name=TCONS_00038359|organism=Clytia hemisphaerica|type=transcript|length=1887bp
TCTCTGGGAAAATGGAATCACATCAAAAACCAGCAAAGCAAAGCAAGTGC
ACCataacaaaactcaaaattatttttttctgaaagaaaagtCAGATGAA
GGTACAACTGAAGAAAAACGTGTGGCTAGAATGGACGTGTATGAAATTAA
AAGGAGTTACcgtaaaaataaaagtaatccAACTCTCTCACACGTCATAA
CTCAGGTGAAACATAACCTCAAAACAATCTACCATCCTTACTATCTAGTT
ACTTACAGAAATTCTGAGTGTGAGAACATACATGATGACGAAGAAGAAAG
ATTTCTCATGCCGAGGCACGGTAATGCAAAACATTCAGAGGCGCCACTCT
ATTATCGGCACGATCCATCTATTAGTAACAGGATCGATGTTGAAATAGAT
GAAGGTCGCTCAACCAACCAAATATATCGTAAGATGGCCGCTGAAGAACC
CAACAGTCTTTCGGAGACTATAAAGAACCCTAAAGTCATTGACAATAGAC
GGGCAGTAGGTGTGGCCAAGAACAAGGAAGCAGAAGGAGGTAATTTGACT
GAAGCGGAAACAATGGTTACCTACATTAAAAAATCTGACAGCTTTtcaaa
atcattctttttaactAAAAAGGAGTATGGTGTCATCAACTATTTAGACT
ACCAACTGTCAGACATGAAACGTTTTTGTGTTGACAATCAAGCTATTTTG
TCGATCGATACTACATTCGATGTTtgtgaaaacctttttttaactGACAC
AAGCTACCCAAATCTGGCTTTGGTCAATGCAAGAGACAGCAAGAAACACC
CACAATTTCCTGGACCATCGTTTTGGCACTTCCGAAAAGACCAAGAAACG
TACCGACGATTTGCAGCAGAGCTTGCCTTCGCTAAGCCTGAGCTTCTGGA
AATCAATAAAATTGGACATGATTTAGATAAAGCCATTGCAAAAGGTTAGT
TCTGTTTTACTTAGTGTACACGAGAAAGAGGGGGGAAGAAACAGAAGAAT
GAAAATACGAAGAAGTAGGATTAAGAAAAAAGAGGTATGGGAGAGAGGAG
AAATGGATGTACATTCAAGGATCGTACCCGTAATGTTTCGATTGATGTGC
AATTTCTTCTCCGAAATAGAAGAATACTTaaatgggattaattttcgcgg
atttcgaaGATTGTAAAATAGGGGCGTTTTTTTGACACACCCGGTATCTT
TCTATTTGCATCAGACGGGCAGGGGCAACAGGATACATATTTTACTagga
aaagtaatttttgttaatgcTACCCTTACTTCAGGTGTCAAAGATATCTT
TCGGGCATCTGAAAGCTTATGGTGCACAAAACATTTCCAAGACAATGATG
CTGAACAGCTTCGATTAAAATGCAAGAGGTTGGAAGATCGAGACAGGATA
ATGGCAGACATATATGGGAGTCAACAAGATGTTGTTCTCCGAGAGGGCCT
TGCTGATGCTAGTGACGAAGACGATCTTTCTGCAAAACTGGAAAGCTTGA
AACCGATCTGGGAAAGGCTCGCACCTGGTTTTTTTGACTGGTTCAAGAAA
AACCGTGTACCAAAATTCAACGAATGTCTGGTAATGGACGCAAGACGAAA
GCATggtattgaaaaaagatttacgaCCAACGCCTTGGAAAATCAACATC
GCATCGAAAAAAAgGTGTTGAAAGAAGAACAAATACCAAAGCAAATGATA
AAAGTGACAGAAACTCTCAATGAATGGACCAAATGCTACTTCCAAGAGGC
AAGACGAGCTATCAGGGGAATTGGAACCTATCGACTAGCACTTGAGTACG
AGCATTTGTATGTGCCTCCAGCAAGATGGGTCAGTTGGAATCAGGAAAAA
CGAGATGCttattttgaaaagttcatGCGGTGTTCAG Run BLAST on NCBI protein sequence of TCONS_00038359-protein >TCONS_00038359-protein ID=TCONS_00038359-protein|Name=TCONS_00038359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
LWENGITSKTSKAKQVHHNKTQNYFFLKEKSDEGTTEEKRVARMDVYEIK
RSYRKNKSNPTLSHVITQVKHNLKTIYHPYYLVTYRNSECENIHDDEEER
FLMPRHGNAKHSEAPLYYRHDPSISNRIDVEIDEGRSTNQIYRKMAAEEP
NSLSETIKNPKVIDNRRAVGVAKNKEAEGGNLTEAETMVTYIKKSDSFSK
SFFLTKKEYGVINYLDYQLSDMKRFCVDNQAILSIDTTFDVCENLFLTDT
SYPNLALVNARDSKKHPQFPGPSFWHFRKDQETYRRFAAELAFAKPELLE
INKIGHDLDKAIAKG Run BLAST on NCBI transcript from alignment at sc0001833:23696..26028+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038359 ID=TCONS_00038359|Name=TCONS_00038359|organism=Clytia hemisphaerica|type=transcript|length=2333bp|location=Sequence derived from alignment at sc0001833:23696..26028+ (Clytia hemisphaerica)
TCTCTGGGAAAATGGAATCACATCAAAAACCAGCAAAGCAAAGCAAGTGC
ACCataacaaaactcaaaattatttttttctgaaagaaaagtCAGATGAA
GGTACAACTGAAGAAAAACGTGTGGCTAGAATGGACGTGTATGAAATTAA
AAGGAGTTACcgtaaaaataaaagtaatccAACTCTCTCACACGTCATAA
CTCAGGTGAAACATAACCTCAAAACAATCTACCATCCTTACTATCTAGTT
ACTTACAGAAATTCTGAGTGTGAGAACATACATGATGACGAAGAAGAAAG
ATTTCTCATGCCGAGGCACGGTAATGCAAAACATTCAGAGGCGCCACTCT
ATTATCGGCACGATCCATCTATTAGTAACAGGATCGATGTTGAAATAGAT
GAAGGTCGCTCAACCAACCAAATATATCGTAAGATGGCCGCTGAAGAACC
CAACAGTCTTTCGGAGACTATAAAGAACCCTAAAGTCATTGACAATAGAC
GGGCAGTAGGTGTGGCCAAGAACAAGGAAGCAGAAGGAGGTAATTTGACT
GAAGCGGAAACAATGGTTACCTACATTAAAAAATCTGACAGCTTTtcaaa
atcattctttttaactAAAAAGGAGTATGGTGTCATCAACTATTTAGACT
ACCAACTGTCAGACATGAAACGTTTTTGTGTTGACAATCAAGCTATTTTG
TCGATCGATACTACATTCGATGTTtgtgaaaacctttttttaactGACAC
AAGCTACCCAAATCTGGCTTTGGTCAATGCAAGAGACAGCAAGAAACACC
CACAATTTCCTGGACCATCGTTTTGGCACTTCCGAAAAGACCAAGAAACG
TACCGACGATTTGCAGCAGAGCTTGCCTTCGCTAAGCCTGAGCTTCTGGA
AATCAATAAAATTGGACATGATTTAGATAAAGCCATTGCAAAAGGTTAGT
TCTGTTTTACTTAGTGTACACGAGAAAGAGGGGGGAAGAAACAGAAGAAT
GAAAATACGAAGAAGTAGGATTAAGAAAAAAGAGGTATGGGAGAGAGGAG
AAATGGATGTACATTCAAGGATCGTACCCGTAATGTTTCGATTGATGTGC
AATTTCTTCTCCGAAATAGAAGAATACTTaaatgggattaattttcgcgg
atttcgaaGATTGTAAAATAGGGGCGTTTTTTTGACACACCCGGTATCTT
TCTATTTGCATCAGACGGGCAGGGGCAACAGGATACATATTTTACTagga
aaagtaatttttgttaatgcTACCCTTACTTCAGGTGTCAAAGATATCTT
TCGGGCATCTGAAAGCTTATGGTGCACAAAACATTTCCAAGACAATGATG
CTGAACAGCTTCGATTAAAATGCAAGAGGTTGGAAGATCGAGACAGGATA
ATGGCAGACATATATGGGAGTCAACAAGATGTTGTTCTCCGAGAGGGCCT
TGCTGATGCTAGTGACGAAGACGATCTTTCTGCAAAACTGGAAAGCTTGA
AACCGATCTGGGAAAGGCTCGCACCTGGTTTTTTTGACTGGTTCAAGAAA
AACCGTGTACCAAAATTCAACGAATGTCTGGTAATGGACGCAAGACGAAA
GCATggtattgaaaaaagatttacgaCCAACGCCTTGGAAAATCAACATC
GCATCGAAAAAAAggtatcaaaaataatttttccaaagcTTGGTGATTTT
CCTATGTCATTCATTTACCAAATTATATCGCACATTCTTTTATAAGTTTT
AAGCAACCGATGAGCTGCCAAGGGAAGTTTATATAGTTGCTATACGAGCT
GAGTATTTTTGGTTCAAAATCCATAACGACTTTTAGGCTGCAATCTTGAT
AAAATTAGCAACTCCATTCATGAGCgcaaaattggagttgcttatgatat
aaaaaaaatgtgtacacgACATTCCTTATTAAACCCTTCTAGGAAACTCG
AGGCTtcaatcaattattttttaaagaaacattGAGTCAAATATGGTTTC
GGTATTTCGATTTTTGATCCACTAAACCTTTTACCCTCGAGTTTAATTTT
TGTCGCTAGGCACTAGCCGcataatcaaattttctttgaaaaaattgtat
tttgattCAGGTGTTGAAAGAAGAACAAATACCAAAGCAAATGATAAAAG
TGACAGAAACTCTCAATGAATGGACCAAATGCTACTTCCAAGAGGCAAGA
CGAGCTATCAGGGGAATTGGAACCTATCGACTAGCACTTGAGTACGAGCA
TTTGTATGTGCCTCCAGCAAGATGGGTCAGTTGGAATCAGGAAAAACGAG
ATGCttattttgaaaagttcatGCGGTGTTCAG Coding sequence (CDS) from alignment at sc0001833:23696..26028+ >TCONS_00038359 ID=TCONS_00038359|Name=TCONS_00038359|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0001833:23696..26028+ (Clytia hemisphaerica)
CTCTGGGAAAATGGAATCACATCAAAAACCAGCAAAGCAAAGCAAGTGCA
CCataacaaaactcaaaattatttttttctgaaagaaaagtCAGATGAAG
GTACAACTGAAGAAAAACGTGTGGCTAGAATGGACGTGTATGAAATTAAA
AGGAGTTACcgtaaaaataaaagtaatccAACTCTCTCACACGTCATAAC
TCAGGTGAAACATAACCTCAAAACAATCTACCATCCTTACTATCTAGTTA
CTTACAGAAATTCTGAGTGTGAGAACATACATGATGACGAAGAAGAAAGA
TTTCTCATGCCGAGGCACGGTAATGCAAAACATTCAGAGGCGCCACTCTA
TTATCGGCACGATCCATCTATTAGTAACAGGATCGATGTTGAAATAGATG
AAGGTCGCTCAACCAACCAAATATATCGTAAGATGGCCGCTGAAGAACCC
AACAGTCTTTCGGAGACTATAAAGAACCCTAAAGTCATTGACAATAGACG
GGCAGTAGGTGTGGCCAAGAACAAGGAAGCAGAAGGAGGTAATTTGACTG
AAGCGGAAACAATGGTTACCTACATTAAAAAATCTGACAGCTTTtcaaaa
tcattctttttaactAAAAAGGAGTATGGTGTCATCAACTATTTAGACTA
CCAACTGTCAGACATGAAACGTTTTTGTGTTGACAATCAAGCTATTTTGT
CGATCGATACTACATTCGATGTTtgtgaaaacctttttttaactGACACA
AGCTACCCAAATCTGGCTTTGGTCAATGCAAGAGACAGCAAGAAACACCC
ACAATTTCCTGGACCATCGTTTTGGCACTTCCGAAAAGACCAAGAAACGT
ACCGACGATTTGCAGCAGAGCTTGCCTTCGCTAAGCCTGAGCTTCTGGAA
ATCAATAAAATTGGACATGATTTAGATAAAGCCATTGCAAAAGGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038359-exon-sc0001833-1491911889:23696..25359 | TCONS_00038359-exon-sc0001833-1491911889:23696..25359 | Clytia hemisphaerica | exon |
| TCONS_00038359-exon-sc0001833-1510915933:23696..25359 | TCONS_00038359-exon-sc0001833-1510915933:23696..25359 | Clytia hemisphaerica | exon |
| TCONS_00038359-exon-sc0001833-1575043694:23696..25359 | TCONS_00038359-exon-sc0001833-1575043694:23696..25359 | Clytia hemisphaerica | exon |
| TCONS_00038359-exon-sc0001833-1491911889:25806..26028 | TCONS_00038359-exon-sc0001833-1491911889:25806..26028 | Clytia hemisphaerica | exon |
| TCONS_00038359-exon-sc0001833-1510915933:25806..26028 | TCONS_00038359-exon-sc0001833-1510915933:25806..26028 | Clytia hemisphaerica | exon |
| TCONS_00038359-exon-sc0001833-1575043694:25806..26028 | TCONS_00038359-exon-sc0001833-1575043694:25806..26028 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001833 | supercontig | sc0001833:23696..26028 + |
Blast
The following BLAST results are available for this feature:
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