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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038309 ID=TCONS_00038309|Name=TCONS_00038309|organism=Clytia hemisphaerica|type=transcript|length=525bp
GTCCTAGTTCTTCATAATGCCAGGAACCTCCAACTctgtgtttttcaaaa
attataccgggtgacccacgaaaaagttcggacgtttctcggcgtcttga
ggccgaacaaatgtcccaaagtgcttggagttttattNAATTCTCGTGAC
CATATAAATATTATGTCATTTCTACTTGTGGACCAAGTGAACAATCCAAT
GAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGAACCAAAGC
TGTCGTTGAAGGCGACCACGTTATATTCAAGAATAAGGTATCCATCAATT
TGAACAAAACAAACGGATACCAAAATGATCTATTGGAAAGAATCGACACC
TTTGCAACATATTCCGTTGAATGCAACGTCCCACAAGGAGTGAATGTGAC
ACATGAAAATGGAGTCAATATCACCAGAGATGCTGATTTGGTGGAAGGTG
TATCAAGTTCGACTGACAAATTCACTGTCTCGATGAATCTCCATAAATCA
TCAAACTTCAATGAAAGTCTTGGNN Run BLAST on NCBI transcript from alignment at sc0001823:27642..30364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038309 ID=TCONS_00038309|Name=TCONS_00038309|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at sc0001823:27642..30364+ (Clytia hemisphaerica)
GTCCTAGTTCTTCATAATGCCAGGAACCTCCAACTctgtgtttttcaaaa
attataccgggtgacccacgaaaaagttcggacgtttctcggcgtcttga
ggccgaacaaatgtcccaaagtgcttggagttttattNAATTCTCGTGAC
CATATAAATATTATGTCATTTCTACTTGTGGACCAAGTGAACAATCCAAT
GAAACATATTTGGTTTTGGAAGCTGGTTATTCGTCTTGTGGAACCAAAGC
TGTCGTTGAAGGCGACCACGTTATATTCAAGAATAAGGTATAGCTTTGAT
TTTactactaaagtctgtccagatataattggcagtggaaacaagaatgc
ctgtaacttttgatagtcaaatataattatggaagttttttttgcttgtt
ttagagaatcaaaagcgctatatttgaatgtatttttggttgaaaaattc
gcgatttttagcagTTAAATTTGCGGTTGTAGAAATTGTGCTTTTTTTCT
ACtcatgctataactttcatttttacaccagtggtagttcaaccttaggt
taagaagattgttaaatttcaaggcaaacagaaaagtccttcggaagata
tgggccCCGAAATATTGGTAGCACTTTtgtgtgaaatatcaaatctccaa
catATTagtaaaaacgggggttatgtttttatttttgaacagtgcaatta
aaagttggaaagtgttttaagtgttggtgcattggtattattggtatcat
tgattatttcgaaaagaagtgaaatcacagtataattgtttttatttaaa
agataagcatgaacttatattgcctttgttatttttaagtcattaaagaa
ctttgctaattcccaaaacactaaacacagtttggctatgaggtcattaa
agagatcgtaaaatgtgttatgatcgaaaaactgttttatcaatattatc
actacccccgtttttagtaataagttggagatttgatatttcacagaaaa
gtgctaccaaggggtatttcaggtcccatatcttccgaaggacttttatg
tttgccttgaaatttttcaaacttcttaacctaaggttgaactaccactg
gtgtaaaaatgaaagttatagcatgagtagaaaaaaagctcaatttttac
aatcgcaaatttaaccgctaaagatcgcgaatttttcaaccttaaataca
ttcaaatatagcgcttttgattctctaaaacaagctaaaaaaattttgga
attgtATTTGGCTATTAAAAGTTAcagacattcttgtttccactgccaat
tatatctggacagactttagagtTCTTTTTTAATTCCAGAGTAAATGAGA
ACACCCCTTCCGCACCCTTATTCCCACTGGAagaattggtcaaaatatcg
tccccagtggaaaattatactttaatttttgtccccactgaaaataatca
aataaaccaatcctcactgcaactcacttctgacttgaaaacaagaATTT
AAATCTGCAGCCATAAAAATATGGGATATCAATCCCCACTGAGCTTCTGT
CTGTTATATTTGACAAAATCCAAAACAAAAAGAGGTTGTAGAAGATACCG
AAGAAACGCTAAAAGCGCTTGACTTTCTGCATATAATATTGGCAAGGTTT
TTTCATTAGCAGAATATTGTGAAGCAACCGAGTCCATTTGGGCATAAGAA
GCCTATATTcaatccgaaggcttaaaaagaATCTTCATGTAAGCAAGAGT
GAAGCGTACAGATTTGCACTGTATTTTGGATGATAAATCGAATCTGAACa
ggttctttgttttttcatttttcaaattcttactTTCAATCTAGTGTTAT
AACAAAAATACGAGGATGAAGGTACGAAAAAATAGCTTCATATCTACATA
GAAGATTAGACTCTTCCCTTCTGCGTTATACACCCATGTCTCACAGGCCT
GGTGAAACTTTCCTCAGGGTGGGGATGGCTTtgaagtacaatttttaaac
attgaatatcGAATGGGGATAaagtttaaagtcaatttcccaccGAGGAc
gaaattttcgccaaattttcTTGTAGGGCTGGGGTCTCAGTGGGTCCGTG
ACACAAgggtgtttttattgaagaaaCTATTTAAGAGAATTTCTCTTCCA
GGTATCCATCAATTTGAACAAAACAAACGGATACCAAAATGATCTATTGG
AAAGAATCGACACCTTTGCAACATATTCCGTTGAATGCAACGTCCCACAA
GGAGTGAATGTGACACATGAAAATGGAGTCAATATCACCAGAGATGCTGA
TTTGGTGGAAGGTGTATCAAGTAAGTAAGATTTATGAGGAGATGTCagta
attaaaatttttatagaACAACTACTTCGCAGCTTGCCACAAATTCTTTT
AGAGGagaaatcttataagaacaggaTCATTTTCCTGAGAACTTGAGACC
AAATTGAGATTAGTTCCAGACTCTACAATCAGAAATAGCCAAAGAATGTT
AAAGGCATTTAAGCCAGTAAATTCATAAACTACAAACGTTTTCGAAATAA
AGGTTTTTGTTCTTGAAAGTTAAAATTGGTCGAATTCTCCATAATTCTGT
TTACAGGCTGACGCGACGGGCTTTGAAATTACCAACATCTATTCATCTTT
CTAGGTTCGACTGACAAATTCACTGTCTCGATGAATCTCCATAAATCATC
AAACTTCAATGAAAGTCTTGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038309-exon-sc0001823-1491911889:27642..27928 | TCONS_00038309-exon-sc0001823-1491911889:27642..27928 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1510915933:27642..27928 | TCONS_00038309-exon-sc0001823-1510915933:27642..27928 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1575043694:27642..27928 | TCONS_00038309-exon-sc0001823-1575043694:27642..27928 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1491911889:29793..29961 | TCONS_00038309-exon-sc0001823-1491911889:29793..29961 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1510915933:29793..29961 | TCONS_00038309-exon-sc0001823-1510915933:29793..29961 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1575043694:29793..29961 | TCONS_00038309-exon-sc0001823-1575043694:29793..29961 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1491911889:30296..30364 | TCONS_00038309-exon-sc0001823-1491911889:30296..30364 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1510915933:30296..30364 | TCONS_00038309-exon-sc0001823-1510915933:30296..30364 | Clytia hemisphaerica | exon |
| TCONS_00038309-exon-sc0001823-1575043694:30296..30364 | TCONS_00038309-exon-sc0001823-1575043694:30296..30364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001823 | supercontig | sc0001823:27642..30364 + |
Blast
The following BLAST results are available for this feature:
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