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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038286 ID=TCONS_00038286|Name=TCONS_00038286|organism=Clytia hemisphaerica|type=transcript|length=1062bp
TCTCTGACACATCTGGTAGTTTTACGTTTTGCAGTTTCATTTGAATTGAC
ATACTCAACATCAACTTTACGAATTTTACCATCTTTACTAACATGAACAG
TTTTTATTCTTCCAAGATGATATGAAGAATTGCAATGGAAGAATCATTCT
TAAGGAAAAGGACAATATCACCCTTTTTCAAGTGCTTGTCGTTCTTAAAC
CACTTTGGTTGTGAAATAAGCTTTGGAACATGTGAAATCAACCAATTTTC
AAACCACGTGTTAAAGATGTTGATATTCGTTTGGATGATTTTGTTGAATG
TTGATGGAACGTTGACTGGACCAATGGGACCTCTCTCGTTGTTGCGTCCG
AGAAGAAGTCTGTTGGGTGTAATAAGGTCCATGCTTTCGAAATCAGATGT
GATGGAACCAAGTGCGATAGGCATGTTATTGAGACTGTTCGAAATCTCTG
ATTTCACCGTTTCCCATTGAAGGATTGATAGTCGTGATTGAGAAATCGTC
CTCTCGATCGATCTTGAAATCTCCTTGATTTTGCGTTCAACCTTTCCTTG
GTAGTTGTGTGCACCAACTGGACTGATGTCGAATTCAATGGAGTAGTTGT
GATGAAGCCTGGCTCGTAAGTCGTGGAAGTCGATTTTGACGTCTTCACAT
CCTTTGATGAGTTGGCTACCAGAGTCGATGAAGAGCTTCTGAGGATAACC
ATGGTGAGATGAAAATCGTACGAACGCTTGGATGAAGGCGACAGTGCTGT
AGTCGTCAATGATCTTGATTGATGTAGCTGAAGTGGTCATGCAGCAGAAG
ACCGTCAACCAAAGTTTGATTGTTGATCGTCTGTGGTGATTGCAGTATGC
CTTTACAGGCCCTGCAAGATCAATCTGAGAATAATAAAATACAGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAATAAAATGCAGGGGCA
ATTGTTAATTGAGGAGACGAGAGCTTGCCCATTTCAATGCTCACAGTCTT
CTTCTCGATGTACCGACATCGAGTACAGTTTCGTTTGATACGTTTGACAA
TTTCACGTCCTT Run BLAST on NCBI protein sequence of TCONS_00038286-protein >TCONS_00038286-protein ID=TCONS_00038286-protein|Name=TCONS_00038286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
GREIVKRIKRNCTRCRYIEKKTVSIEMGKLSSPQLTIAPAFYYSXXXXXX
XXXXXPVFYYSQIDLAGPVKAYCNHHRRSTIKLWLTVFCCMTTSATSIKI
IDDYSTVAFIQAFVRFSSHHGYPQKLFIDSGSQLIKGCEDVKIDFHDLRA
RLHHNYSIEFDISPVGAHNYQGKVERKIKEISRSIERTISQSRLSILQWE
TVKSEISNSLNNMPIALGSITSDFESMDLITPNRLLLGRNNERGPIGPVN
VPSTFNKIIQTNINIFNTWFENWLISHVPKLISQPKWFKNDKHLKKGDIV
LFLKNDSSIAILHIILEE Run BLAST on NCBI transcript from alignment at sc0001819:24589..25650 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038286 ID=TCONS_00038286|Name=TCONS_00038286|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0001819:24589..25650 (Clytia hemisphaerica)
AAGGACGTGAAATTGTCAAACGTATCAAACGAAACTGTACTCGATGTCGG
TACATCGAGAAGAAGACTGTGAGCATTGAAATGGGCAAGCTCTCGTCTCC
TCAATTAACAATTGCCCCTGCATTTTATTATTCTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCTGTATTTTATTATTCTCAGATTGATCTTGCA
GGGCCTGTAAAGGCATACTGCAATCACCACAGACGATCAACAATCAAACT
TTGGTTGACGGTCTTCTGCTGCATGACCACTTCAGCTACATCAATCAAGA
TCATTGACGACTACAGCACTGTCGCCTTCATCCAAGCGTTCGTACGATTT
TCATCTCACCATGGTTATCCTCAGAAGCTCTTCATCGACTCTGGTAGCCA
ACTCATCAAAGGATGTGAAGACGTCAAAATCGACTTCCACGACTTACGAG
CCAGGCTTCATCACAACTACTCCATTGAATTCGACATCAGTCCAGTTGGT
GCACACAACTACCAAGGAAAGGTTGAACGCAAAATCAAGGAGATTTCAAG
ATCGATCGAGAGGACGATTTCTCAATCACGACTATCAATCCTTCAATGGG
AAACGGTGAAATCAGAGATTTCGAACAGTCTCAATAACATGCCTATCGCA
CTTGGTTCCATCACATCTGATTTCGAAAGCATGGACCTTATTACACCCAA
CAGACTTCTTCTCGGACGCAACAACGAGAGAGGTCCCATTGGTCCAGTCA
ACGTTCCATCAACATTCAACAAAATCATCCAAACGAATATCAACATCTTT
AACACGTGGTTTGAAAATTGGTTGATTTCACATGTTCCAAAGCTTATTTC
ACAACCAAAGTGGTTTAAGAACGACAAGCACTTGAAAAAGGGTGATATTG
TCCTTTTCCTTAAGAATGATTCTTCCATTGCAATTCTTCATATCATCTTG
GAAGAATAAAAACTGTTCATGTTAGTAAAGATGGTAAAATTCGTAAAGTT
GATGTTGAGTATGTCAATTCAAATGAAACTGCAAAACGTAAAACTACCAG
ATGTGTCAGAGA Coding sequence (CDS) from alignment at sc0001819:24589..25650 >TCONS_00038286 ID=TCONS_00038286|Name=TCONS_00038286|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at sc0001819:24589..25650 (Clytia hemisphaerica)
GGACGTGAAATTGTCAAACGTATCAAACGAAACTGTACTCGATGTCGGTA
CATCGAGAAGAAGACTGTGAGCATTGAAATGGGCAAGCTCTCGTCTCCTC
AATTAACAATTGCCCCTGCATTTTATTATTCTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCTGTATTTTATTATTCTCAGATTGATCTTGCAGG
GCCTGTAAAGGCATACTGCAATCACCACAGACGATCAACAATCAAACTTT
GGTTGACGGTCTTCTGCTGCATGACCACTTCAGCTACATCAATCAAGATC
ATTGACGACTACAGCACTGTCGCCTTCATCCAAGCGTTCGTACGATTTTC
ATCTCACCATGGTTATCCTCAGAAGCTCTTCATCGACTCTGGTAGCCAAC
TCATCAAAGGATGTGAAGACGTCAAAATCGACTTCCACGACTTACGAGCC
AGGCTTCATCACAACTACTCCATTGAATTCGACATCAGTCCAGTTGGTGC
ACACAACTACCAAGGAAAGGTTGAACGCAAAATCAAGGAGATTTCAAGAT
CGATCGAGAGGACGATTTCTCAATCACGACTATCAATCCTTCAATGGGAA
ACGGTGAAATCAGAGATTTCGAACAGTCTCAATAACATGCCTATCGCACT
TGGTTCCATCACATCTGATTTCGAAAGCATGGACCTTATTACACCCAACA
GACTTCTTCTCGGACGCAACAACGAGAGAGGTCCCATTGGTCCAGTCAAC
GTTCCATCAACATTCAACAAAATCATCCAAACGAATATCAACATCTTTAA
CACGTGGTTTGAAAATTGGTTGATTTCACATGTTCCAAAGCTTATTTCAC
AACCAAAGTGGTTTAAGAACGACAAGCACTTGAAAAAGGGTGATATTGTC
CTTTTCCTTAAGAATGATTCTTCCATTGCAATTCTTCATATCATCTTGGA
AGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038286-exon-sc0001819-1491911889:24589..25650 | TCONS_00038286-exon-sc0001819-1491911889:24589..25650 | Clytia hemisphaerica | exon |
| TCONS_00038286-exon-sc0001819-1510915933:24589..25650 | TCONS_00038286-exon-sc0001819-1510915933:24589..25650 | Clytia hemisphaerica | exon |
| TCONS_00038286-exon-sc0001819-1575043694:24589..25650 | TCONS_00038286-exon-sc0001819-1575043694:24589..25650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001819 | supercontig | sc0001819:24589..25650 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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