TCONS_00038251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038251
Unique NameTCONS_00038251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038251 ID=TCONS_00038251|Name=TCONS_00038251|organism=Clytia hemisphaerica|type=transcript|length=558bp
CCTTAAACTAAAATATCTCGATAAAGAAAAAGGACTCTTATTGACCATTC
ATTCTtgagaattcaaaattttcataacaGAAGGAATACTGGAAACTTTA
TTTTGGGCACGAAGACTTTCCTAGTTTTTGCCAAGAGTTTCAATATCAGG
GCATTCGCTTCTTCCCCCGACCTTTCGTTGACAGCCAAAATATTCTTCCA
GGGTATCTTGGCAAAAACGTTCAGTTAGCACGAAAGAAACACCTTCATTA
ATCAAAAATTTCACGTGTCAATCATTGAGTAGACAGTCATTTGTAGACCT
TCATGGCTTTGCCATGAAATAGACATCTTGGCTTTCTCTTTGGGTTGAAA
ATCGCCTTGTCTGGACTTGATTGATTCGAGGCAATTTTGGAAAAAGGGAA
GAAATCTTTTGACCAACCATTGAAAACGCTTATCTGTAACACTAGTATAa
ggttttaagtctctttttcGACGCCTTTTGTGCTCTTTTAAACTCCTCAC
ATTGAGGCAGTCGAAAAATCTGTCCATGTAATGACAGAGATTGGCTGTTT
TTCTTGtc
Run BLAST on NCBI

transcript from alignment at sc0001810:2258..2815

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038251 ID=TCONS_00038251|Name=TCONS_00038251|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0001810:2258..2815 (Clytia hemisphaerica)
gaCAAGAAAAACAGCCAATCTCTGTCATTACATGGACAGATTTTTCGACT
GCCTCAATGTGAGGAGTTTAAAAGAGCACAAAAGGCGTCgaaaaagagac
ttaaaacctTATACTAGTGTTACAGATAAGCGTTTTCAATGGTTGGTCAA
AAGATTTCTTCCCTTTTTCCAAAATTGCCTCGAATCAATCAAGTCCAGAC
AAGGCGATTTTCAACCCAAAGAGAAAGCCAAGATGTCTATTTCATGGCAA
AGCCATGAAGGTCTACAAATGACTGTCTACTCAATGATTGACACGTGAAA
TTTTTGATTAATGAAGGTGTTTCTTTCGTGCTAACTGAACGTTTTTGCCA
AGATACCCTGGAAGAATATTTTGGCTGTCAACGAAAGGTCGGGGGAAGAA
GCGAATGCCCTGATATTGAAACTCTTGGCAAAAACTAGGAAAGTCTTCGT
GCCCAAAATAAAGTTTCCAGTATTCCTTCtgttatgaaaattttgaattc
tcaAGAATGAATGGTCAATAAGAGTCCTTTTTCTTTATCGAGATATTTTA
GTTTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022879XLOC_022879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038251-exon-sc0001810-1491911889:2258..2815TCONS_00038251-exon-sc0001810-1491911889:2258..2815Clytia hemisphaericaexon
TCONS_00038251-exon-sc0001810-1510915933:2258..2815TCONS_00038251-exon-sc0001810-1510915933:2258..2815Clytia hemisphaericaexon
TCONS_00038251-exon-sc0001810-1575043694:2258..2815TCONS_00038251-exon-sc0001810-1575043694:2258..2815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001810supercontigsc0001810:2258..2815 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.304966	0	0.115099	0.225214	3.15302	2.38323	2.2218	2.81415	1.71326	1.3794	1.54486	2.50497	1.28455	0.98296	1.15447	1.61059	1.8315	1.64257	2.16124	1.92234	1.27772	1.43822	1.39867	2.11933	0	0	2.09085	1.19008	1.35396	1.26451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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