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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038192 ID=TCONS_00038192|Name=TCONS_00038192|organism=Clytia hemisphaerica|type=transcript|length=2172bp
caaaataaTGTCTTGCCAGTCAACTGCTGGTCATACCGCTGTATTGGTGT
TAATCTTTTTGATACCGACGCTGATTTTAATTATCATGCAGATTTACTCG
CGACTTAAGAAAGGGAAATTGACAGCACAAGCACCATTCCTGTTCCTGCA
AGACAATGACCGAAAtcgattgatgacgtcattagcGTTTGGCCACCTTT
CGTTCCGTGTTTTTAACATTATCTTCGGAGGCGAAACTTTTGCACTAGCA
CTTTGCTCAAGCATATCAGATCAACCAGAATATTACATGTGTTCATTTTT
CTCAAAGATCTTGTTTGCAACTTTGAATGGATTTTTAGCTTTCCCGTTTT
TTGCTTTGATCTCCTCTCCGCATTTACTGGTTTCGTCAGCTGTTGGAATC
GGATTTACCGTTTGGGAGATTGTATTTCTTGgactaaattttgattttga
cgatGACTGTTATTTGAAGGATACGTTACAACGAGTCGTTGCAATAATTG
CGATGCCTAGTTTCATTTTTCTTGCTATCATCTTGTTCGGTTTCGGATAT
CGCTTATACACGTGCTTCAAAACAGGTNTAATTTGAAAGCTACCTTACAA
CGAATCACTGCAATACTTGTGATAcctaatttcatttttcttgctGTCAT
CTTGTTTGGTTTCGGATATCGCTTATACACATGCTTCAAAACAGGATGTT
ATGAACTTCCAACGAACGAGAAAAGCGTCGTAGATACACATCAAATCCtg
tatttgaaaaatcttctacaaaggaaaaatatttcaaatcagTCACAGTT
AACTCTgtttcaaaaactgaaaaatgttttcaaaccGTGGTTTAAATTTC
CTGGTGAAATTCTTCAATGTATGTCTGTGATTTTCGTCTTGCTGTATTTG
ATTCTGTTTCTAATGCAATACCAAGGGTTAAAATTACTCTACAAGTTCTT
AAAGGTACTGGAAACTAATCCTAACACAGACATCGAAGCAGTCTGGTATT
TAGCGTTGGTCATCAGTATTGTCTTGTACCTAGTCATGGGGGTTCATTTT
TTGTATTGTTACCAAAATGATACTCTGGCAATATACACGGGAAATCACAA
CCTCTACCGGAAAGATGATCGTTGCCATAATATCGCTTTGTACCATCGAG
TGGTATTTCCAGCATTCTTAATCAGTGCAATGCTCATTGGTTTTCTatgt
tgttttttgttggttGGCATCATTGTTGCGATTGTTTATCTCCTAGCAGC
TATAGCAACAGGATCACAAGTCTTGATATTGCTTCGCTACACATTATCTT
TTGCTGGCACTGGTATCGTTTTTAAAATCATCCAACGCTTAAGCATCCGT
TATTATTTCTCCGATTTGGAATCATCGAAACTTCAGATTAATATTAAGCA
TCCACGTTTGTTTTACGTTCTAtccttctttttattcttcgtGAATGTGT
TCACGGGTCTGATGTCCCTGGTCAAACGTCTCTTATTCATCATTTTCAGT
TTTCTGTTGTCTTACGGTCGCATTGATCGTAACCCAATGATGTTCTTCAA
GAGTATGGATATATCGAATTAGTACAGCTCCTTTTTACGTGTGGAGAACG
TCTTCAAGAACCCCATCATGCGTTGCTTCTGTCAATTCCTCATGGAACCT
CACATTCGAAATATATCACAGCTCACTTCTCAACAACTCACCAGAAACGT
GTGGGGAAGCCCTTTGATTCGTGGATTCGACCACTCGCTTCAACCAATCA
CCGGGTcaggaaaaagcgggaaagTGGCGCGAAACCGTTGGTACGTCGCG
TACACGCTACTACGCAACCCAGGATTGACCAATGAACGACGATACCATGG
TAGGCATCGAGATAACAGTCGAATCATACCCTCGGAAAACGGAAGCATTA
ATGCGTAAAACggtaaaacattcgaaagtgaaATTGAACTTCAACTTTta
tgtaaaaaaaggattttcttcGCTTTGTCAAGAAAGGAAtaatggtcaat
tttgacctGGATTACCCGAGACCTGGTTTATGGAATAATTCTGTGTATGA
AAAAAGAACACTTGAGACTTTTACTGTAGtagttttaaatttgatatcat
aatttttttagttttttgtgaGATATAATTTCAATGGTTTTTGAATGAGG
TCAGTAAAGAATAACAACAATT Run BLAST on NCBI protein sequence of TCONS_00038192-protein >TCONS_00038192-protein ID=TCONS_00038192-protein|Name=TCONS_00038192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MSVIFVLLYLILFLMQYQGLKLLYKFLKVLETNPNTDIEAVWYLALVISI
VLYLVMGVHFLYCYQNDTLAIYTGNHNLYRKDDRCHNIALYHRVVFPAFL
ISAMLIGFLCCFLLVGIIVAIVYLLAAIATGSQVLILLRYTLSFAGTGIV
FKIIQRLSIRYYFSDLESSKLQINIKHPRLFYVLSFFLFFVNVFTGLMSL
VKRLLFIIFSFLLSYGRIDRNPMMFFKSMDISN Run BLAST on NCBI transcript from alignment at sc0001794:13627..15798 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038192 ID=TCONS_00038192|Name=TCONS_00038192|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at sc0001794:13627..15798 (Clytia hemisphaerica)
AATTGTTGTTATTCTTTACTGACCTCATTCAAAAACCATTGAAATTATAT
CtcacaaaaaactaaaaaaattatgatatcaaatttaaaactaCTACAGT
AAAAGTCTCAAGTGTTCTTTTTTCATACACAGAATTATTCCATAAACCAG
GTCTCGGGTAATCCaggtcaaaattgaccattaTTCCTTTCTTGACAAAG
CgaagaaaatcctttttttacataAAAGTTGAAGTTCAATttcactttcg
aatgttttaccGTTTTACGCATTAATGCTTCCGTTTTCCGAGGGTATGAT
TCGACTGTTATCTCGATGCCTACCATGGTATCGTCGTTCATTGGTCAATC
CTGGGTTGCGTAGTAGCGTGTACGCGACGTACCAACGGTTTCGCGCCAct
ttcccgctttttcctgACCCGGTGATTGGTTGAAGCGAGTGGTCGAATCC
ACGAATCAAAGGGCTTCCCCACACGTTTCTGGTGAGTTGTTGAGAAGTGA
GCTGTGATATATTTCGAATGTGAGGTTCCATGAGGAATTGACAGAAGCAA
CGCATGATGGGGTTCTTGAAGACGTTCTCCACACGTAAAAAGGAGCTGTA
CTAATTCGATATATCCATACTCTTGAAGAACATCATTGGGTTACGATCAA
TGCGACCGTAAGACAACAGAAAACTGAAAATGATGAATAAGAGACGTTTG
ACCAGGGACATCAGACCCGTGAACACATTCacgaagaataaaaagaagga
TAGAACGTAAAACAAACGTGGATGCTTAATATTAATCTGAAGTTTCGATG
ATTCCAAATCGGAGAAATAATAACGGATGCTTAAGCGTTGGATGATTTTA
AAAACGATACCAGTGCCAGCAAAAGATAATGTGTAGCGAAGCAATATCAA
GACTTGTGATCCTGTTGCTATAGCTGCTAGGAGATAAACAATCGCAACAA
TGATGCCaaccaacaaaaaacaacatAGAAAACCAATGAGCATTGCACTG
ATTAAGAATGCTGGAAATACCACTCGATGGTACAAAGCGATATTATGGCA
ACGATCATCTTTCCGGTAGAGGTTGTGATTTCCCGTGTATATTGCCAGAG
TATCATTTTGGTAACAATACAAAAAATGAACCCCCATGACTAGGTACAAG
ACAATACTGATGACCAACGCTAAATACCAGACTGCTTCGATGTCTGTGTT
AGGATTAGTTTCCAGTACCTTTAAGAACTTGTAGAGTAATTTTAACCCTT
GGTATTGCATTAGAAACAGAATCAAATACAGCAAGACGAAAATCACAGAC
ATACATTGAAGAATTTCACCAGGAAATTTAAACCACggtttgaaaacatt
tttcagtttttgaaacAGAGTTAACTGTGActgatttgaaatatttttcc
tttgtagaagatttttcaaatacaGGATTTGATGTGTATCTACGACGCTT
TTCTCGTTCGTTGGAAGTTCATAACATCCTGTTTTGAAGCATGTGTATAA
GCGATATCCGAAACCAAACAAGATGACagcaagaaaaatgaaattaggTA
TCACAAGTATTGCAGTGATTCGTTGTAAGGTAGCTTTCAAATTANACCTG
TTTTGAAGCACGTGTATAAGCGATATCCGAAACCGAACAAGATGATAGCA
AGAAAAATGAAACTAGGCATCGCAATTATTGCAACGACTCGTTGTAACGT
ATCCTTCAAATAACAGTCatcgtcaaaatcaaaatttagtcCAAGAAATA
CAATCTCCCAAACGGTAAATCCGATTCCAACAGCTGACGAAACCAGTAAA
TGCGGAGAGGAGATCAAAGCAAAAAACGGGAAAGCTAAAAATCCATTCAA
AGTTGCAAACAAGATCTTTGAGAAAAATGAACACATGTAATATTCTGGTT
GATCTGATATGCTTGAGCAAAGTGCTAGTGCAAAAGTTTCGCCTCCGAAG
ATAATGTTAAAAACACGGAACGAAAGGTGGCCAAACgctaatgacgtcat
caatcgaTTTCGGTCATTGTCTTGCAGGAACAGGAATGGTGCTTGTGCTG
TCAATTTCCCTTTCTTAAGTCGCGAGTAAATCTGCATGATAATTAAAATC
AGCGTCGGTATCAAAAAGATTAACACCAATACAGCGGTATGACCAGCAGT
TGACTGGCAAGACAttattttg Coding sequence (CDS) from alignment at sc0001794:13627..15798 >TCONS_00038192 ID=TCONS_00038192|Name=TCONS_00038192|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0001794:13627..15798 (Clytia hemisphaerica)
CTAATTCGATATATCCATACTCTTGAAGAACATCATTGGGTTACGATCAA
TGCGACCGTAAGACAACAGAAAACTGAAAATGATGAATAAGAGACGTTTG
ACCAGGGACATCAGACCCGTGAACACATTCacgaagaataaaaagaagga
TAGAACGTAAAACAAACGTGGATGCTTAATATTAATCTGAAGTTTCGATG
ATTCCAAATCGGAGAAATAATAACGGATGCTTAAGCGTTGGATGATTTTA
AAAACGATACCAGTGCCAGCAAAAGATAATGTGTAGCGAAGCAATATCAA
GACTTGTGATCCTGTTGCTATAGCTGCTAGGAGATAAACAATCGCAACAA
TGATGCCaaccaacaaaaaacaacatAGAAAACCAATGAGCATTGCACTG
ATTAAGAATGCTGGAAATACCACTCGATGGTACAAAGCGATATTATGGCA
ACGATCATCTTTCCGGTAGAGGTTGTGATTTCCCGTGTATATTGCCAGAG
TATCATTTTGGTAACAATACAAAAAATGAACCCCCATGACTAGGTACAAG
ACAATACTGATGACCAACGCTAAATACCAGACTGCTTCGATGTCTGTGTT
AGGATTAGTTTCCAGTACCTTTAAGAACTTGTAGAGTAATTTTAACCCTT
GGTATTGCATTAGAAACAGAATCAAATACAGCAAGACGAAAATCACAGAC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038192-exon-sc0001794-1491911889:13627..15798 | TCONS_00038192-exon-sc0001794-1491911889:13627..15798 | Clytia hemisphaerica | exon |
| TCONS_00038192-exon-sc0001794-1510915933:13627..15798 | TCONS_00038192-exon-sc0001794-1510915933:13627..15798 | Clytia hemisphaerica | exon |
| TCONS_00038192-exon-sc0001794-1575043694:13627..15798 | TCONS_00038192-exon-sc0001794-1575043694:13627..15798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001794 | supercontig | sc0001794:13627..15798 . |
Blast
The following BLAST results are available for this feature:
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