|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038178 ID=TCONS_00038178|Name=TCONS_00038178|organism=Clytia hemisphaerica|type=transcript|length=2160bp
caaagattctttaaaAAGAGGGATATATAAAATAACGATTTTACCATAAA
TGACAGGCTTAGACCTGGCTGCATTTTTTGCAATATAATGTACTGGTACT
GTTAGTTTTACTATATACTATATTTTCAAGCGTATTGAACACTGGATCTC
CCACTACTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATAGC
CACGTATCGAACACTGTATCTACTGGAACTTCATTAATTTCAACCATTGG
ATCTGAATTTGATAGCCAGACAAAAGACACGCTTGATGGGGATTTGATTT
GTCCAATTTGTCGGAAAGGAATATACATACCAGTAACGAAAGTGACAAAT
TGTGAATGTAAATACCATTACAGCTGTGTCGAGGGGGAATTGATGTTTGT
AAACAATTTTCTGTGCCCAGGCTgtaataaaaaagtctttagaATAGGAG
AAGAAGATATGTCTGAAAAATTTGTCAACGAGTTGTTGAATGAGCTGTGC
GATTTGAATTGTCATGATCCAGTTGAAATGCTAAGGTTTTTACAATCCAA
ATTAGTTAAAGGTCGTCAATTGTTCATCCCAGACATCACACAGTACGAAC
CCAAAGGGGACGATTCGGTGAATTACATTGCTGTTGACAGGCAATCAATC
ATTAATTCCACTTTTGTGGAGTTTGAGGAGATTGATGATTTCAAACTCAC
ATTCGAGGTTGATTTCATAGGAGAAACCGCTAAAGACAACGGTGGGGTCC
GCATGGAATGGACCGGCTTAATCAACAGAGCAATCTTTGAAAAGTACTTC
GAAAATGGTCTAAAGGCGCATCTTAGCAAGGACTATTTTTTGGTTGGTGT
ATTGGTTGGAATATCGCTCATTCAGGGTGGCATTTCACCAAAGTTCTTTA
AGGAAGAACAGCTGGAAGTGATATTTCATCATTCTGAGAAGGCTACGGAA
CCAATGAAACAACTGATCAGAGGTCTGGAGGTGTTCCACCTCCATACcgt
ctttcaaaaatttcccaTGTTGGCCCACCTTTTCAGGAAGTCTGACTTCC
AACTGAGCCCAAGATATTTGATGAATCTCATCCAAACGGACTTTAAACCT
AATGGATCACCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTT
GAGAGAAGTTGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTAC
TGCGTTTTATAACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTN
GATTTGGTCACCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATT
TGAGAGAAGTTGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTA
CTGCGTTTTATAACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGT
GccactgaaaatgatatttgttGACTCTACAGTTACATATAAAATTATCA
AGGTAAATTATTATATTGCTCAAAGAGATACTGGAGGTCAAAATGCAGAA
TGCAAACCTTCTATAGTCTGGCGGTggtgtatttttttttctcaatttct
caATTTGTAAAAATTAGTTAGGGGTTGACCATCGTTCCCTGAAtgagaaa
gatcaaaatttaaaaggttTGAACCATGGAATTAATGTCTCATTGGCTAC
CAATATAAGAAAAGTCGtcataattgaaaattttttaccattcgaaaaat
catgaaatagtGATTAATGAAAGGCTATATAATCTCGGGTATCTAATTGA
TGTATATCGTACATAggtgtgtacatcaaattaaaTAGGTTTGATTTTTA
GAAAAGTCTATTCATGAAGTTGAAAGTGGAACAAAATTAGACGAACAAGG
AGAAAAAGAAGTTAACGAGCAGACACGTGAGACACCACTAGAAAAGACGA
AGGATGAAGACAAAGAGGAAAATGTTGAGGAGAAGACTGATGAATCGACG
CCAGAAGACGAGAATGGTGAAGAGATAAAGGTGAAGGTCATCGATTACAC
GCCTAAAGCGCACATTTGCGCCAACCAGATAGAAATGCCGCGTGGCTTAT
TGGATGAAGAACTGCCACCCTTGgaaaagattttaaagatttacgACTAC
GCATTTGCCAAtgcattttttggaaattattagAACAGTCGCGAAACTTT
Ataacaacat Run BLAST on NCBI protein sequence of TCONS_00038178-protein >TCONS_00038178-protein ID=TCONS_00038178-protein|Name=TCONS_00038178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MFVNNFLCPGCNKKVFRIGEEDMSEKFVNELLNELCDLNCHDPVEMLRFL
QSKLVKGRQLFIPDITQYEPKGDDSVNYIAVDRQSIINSTFVEFEEIDDF
KLTFEVDFIGETAKDNGGVRMEWTGLINRAIFEKYFENGLKAHLSKDYFL
VGVLVGISLIQGGISPKFFKEEQLEVIFHHSEKATEPMKQLIRGLEVFHL
HTVFQKFPMLAHLFRKSDFQLSPRYLMNLIQTDFKPNGSPREKNIYSYFV
KYLREVAAKRRGEITLGHVLRFITGCSEVPELGFAXDLVTQGKEHILVLR
QIFERSCRKAKRRNNPWTCTAFYNRLQ Run BLAST on NCBI transcript from alignment at sc0001790:13733..17117- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038178 ID=TCONS_00038178|Name=TCONS_00038178|organism=Clytia hemisphaerica|type=transcript|length=3385bp|location=Sequence derived from alignment at sc0001790:13733..17117- (Clytia hemisphaerica)
CAAAGATTCTTTAAAAAGAGGGATATATAAAATAACGATTTTACCATAAA
TGACAGGCTTAGACCTGGCTGCATTTTTTGCAATATAATGTACTGGTACT
GTTAGTTTTACTATATACTATATTTTCAAGCGTATTGAACACTGGATCTC
CCACTACTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATAGC
CAGTAAGTTAATTTTTATCATCCATCGTGATATTTGTCTCGCTGAATCTG
AAACAGTTGTAATGGCAAGTTTAGACCTGGCTTCACTCTATGTTATATTA
TGTATTGGCGGTACTGAGAGTTTTACTATATTTTCCAGTGCATCAAACAC
TGGATCTCCCACTACTGGAACTTCATTAATTTCAATTATTGGATCTGAAT
TTGATAGCCAGTAAGTTGTTTTATCATCCATCGTAATCTTTGTCTCACTG
AATCTGAAACAGTTGTAATGGCAAGTTTAGACCTGGCTTCACTCTATGTT
ATATTATGTACTGGTAAGACTGAGAGTTTTACTATATTTTCCAGCGTATC
GAACACTGTATCTACTGGAACTTCATTAATTTCAACCATTGGATCTGAAT
TTGATAGCCAGTAAGTTAATTTTTTACAATCCCATGTTTTATCATCCATT
ATGATATCTGACTGACTCAATTTAAAGCGGGACTCGGGTGGGATATTTTT
TCTACCCCCTAGCCTAAGGGTTTTGTAAGGAGAATCTTTTTACTTAAGGG
GGGTCTCGACCTCCATAAAACTTTTGGGATATGAAACAATCATAAATGAC
AGGTTTAGACCACACTTCACTTGTGCTTTATTACGTTACTGGTACTGACC
TGGCTTCACTCTATGTTATATTATGTACTGGTAAGACTGAGAATTTTACT
ATATTTTCCAGCGTATTGAACACTGGATCTCCCACTACTGGAACTTCATT
TACTTCAACCATTGGATCTGAATTTGATAGCCAGTAAGTTAATTTTTATG
GTTTGTTTCACTGGGAAAGACCTACTCTGTACTTTGTACCAAAGCCTGAC
GGAACAAGGGGTCATGTCAGGATACCAATTCAGGGCCCCAAAACATGACT
TCGAGATTTGAAAGTAGTAGACACCACCCCCTTAATTTTGTATCGATACC
AACTTGAAAATATAAATTTTCTAAAAAAAGTTACTAACACCCCTGTTGTG
CACACTTTTGTAATTGCGCAGGCACTTAATTACAAAACTGCGCAGCTCAA
AAACAACAAAAGTGCGCAGAAAAATTACAAAAGTGCGCAAAAATTACAAA
GCTGCGCAAAAAAATTACAAAAGTGCGCAGAAATTACAAAAGTGCGCACA
ACACCCCTAAATTAGTATCGATACCAACATGGGAAATCCAAGTTTAAATA
GGGAAAACCGTTTACTTTGATTATCTTGCAGGACAAAAGACACGCTTGAT
GGGGATTTGATTTGTCCAATTTGTCGGAAAGGAATATACATACCAGTAAC
GAAAGTGACAAATTGTGAATGTAAATACCATTACAGCTGTGTCGAGGGGG
AATTGATGTTTGTAAACAATTTTCTGTGCCCAGGCTGTAATAAAAAAGTC
TTTAGAATAGGAGAAGAAGATATGTCTGAAAAATTTGTCAACGAGTTGTT
GAATGAGCTGTGCGATTTGAATTGTCATGATCCAGTTGAAATGCTAAGGT
TTTTACAATCCAAATTAGTTAAAGGTCGTCAATTGTTCATCCCAGACATC
ACACAGTACGAACCCAAAGGGGACGATTCGGTGAATTACATTGCTGTTGA
CAGGCAATCAATCATTAATTCCACTTTTGTGGAGTTTGAGGAGATTGATG
ATTTCAAACTCACATTCGAGGTTGATTTCATAGGAGAAANATGGAGTTTG
AGGAGATAGATGATTTCAAACTCACATTCGAGGTTGATTTCATAGGAGAA
ACCGCTAAAGACAACGGTGGGGTCCGCATGGAATGGACCGGCTTAATCAA
CAGAGCAATCTTTGAAAAGTACTTCGAAAATGGTCTAAAGGCGCATCTTA
GCAAGGACTATTTTTTGGTTGGTGTATTGGTTGGAATATCGCTCATTCAG
GGTGGCATTTCACCAAAGTTCTTTAAGGAAGAACAGCTGGAAGTGATATT
TCATCATTCTGAGAAGGCTACGGAACCAATGAAACAACTGATCAGAGGTC
TGGAGGTGTTCCACCTCCATACCGTCTTTCAAAAATTTCCCATGTTGGCC
CACCTTTTCAGGAAGTCTGACTTCCAACTGAGCCCAAGATATTTGATGAA
TCTCATCCAAACGGACTTTAAACCTAATGGATCACCCAGGGAAAAGAACA
TATACTCGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGA
GGCGAAATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGA
AGTGCCAGAGTTGGGCTTTGCTGTNGATTTGGTCACCCAGGGAAAAGAAC
ATATACTCGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAG
AGGCGAAATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTG
AAGTGCCAGAGTTGGGCTTTGCTGTGCCACTGAAAATGATATTTGTTGAC
TCTACAGTTACATATAAAATTATCAAGGTAAATTATTATATTGCTCAAAG
AGATACTGGAGGTCAAAATGCAGAATGCAAACCTTCTATAGTCTGGCGGT
GGTGTATTTTTTTTTCTCAATTTCTCAATTTGTAAAAATTAGTTAGGGGT
TGACCATCGTTCCCTGAATGAGAAAGATCAAAATTTAAAAGGTTTGAACC
ATGGAATTAATGTCTCATTGGCTACCAATATAAGAAAAGTCGTCATAATT
GAAAATTTTTTACCATTCGAAAAATCATGAAATAGTGATTAATGAAAGGC
TATATAATCTCGGGTATCTAATTGATGTATATCGTACATAGGTGTGTACA
TCAAATTAAATAGGTTTGATTTTTAGAAAAGTCTATTCATGAAGTTGAAA
GTGGAACAAAATTAGACGAACAAGGAGAAAAAGAAGTTAACGAGCAGACA
CGTGAGACACCACTAGAAAAGACGAAGGATGAAGACAAAGAGGAAAATGT
TGAGGAGAAGACTGATGAATCGACGCCAGAAGACGAGAATGGTGAAGAGA
TAAAGGTGAAGGTCATCGATTACACGCCTAAAGCGCACATTTGCGCCAAC
CAGATAGAAATGCCGCGTGGCTTATTGGATGAAGAACTGCCACCCTTGGA
AAAGATTTTAAAGATTTACGACTACGCATTTGCCAATGCATTTTTTGGAA
ATTATTAGAACAGTCGCGAAACTTTATAACAACAT Coding sequence (CDS) from alignment at sc0001790:13733..17117- >TCONS_00038178 ID=TCONS_00038178|Name=TCONS_00038178|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at sc0001790:13733..17117- (Clytia hemisphaerica)
GTTGATTTCATAGGAGAAACCGCTAAAGACAACGGTGGGGTCCGCATGGA
ATGGACCGGCTTAATCAACAGAGCAATCTTTGAAAAGTACTTCGAAAATG
GTCTAAAGGCGCATCTTAGCAAGGACTATTTTTTGGTTGGTGTATTGGTT
GGAATATCGCTCATTCAGGGTGGCATTTCACCAAAGTTCTTTAAGGAAGA
ACAGCTGGAAGTGATATTTCATCATTCTGAGAAGGCTACGGAACCAATGA
AACAACTGATCAGAGGTCTGGAGGTGTTCCACCTCCATACCGTCTTTCAA
AAATTTCCCATGTTGGCCCACCTTTTCAGGAAGTCTGACTTCCAACTGAG
CCCAAGATATTTGATGAATCTCATCCAAACGGACTTTAAACCTAATGGAT
CACCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAGAGAA
GTTGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGCGTTT
TATAACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTNGATTTGG
TCACCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAGAGA
AGTTGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGCGTT
TTATAACCGGTTGCAGTGAATGTTTGTAAACAATTTTCTGTGCCCAGGCT
GTAATAAAAAAGTCTTTAGAATAGGAGAAGAAGATATGTCTGAAAAATTT
GTCAACGAGTTGTTGAATGAGCTGTGCGATTTGAATTGTCATGATCCAGT
TGAAATGCTAAGGTTTTTACAATCCAAATTAGTTAAAGGTCGTCAATTGT
TCATCCCAGACATCACACAGTACGAACCCAAAGGGGACGATTCGGTGAAT
TACATTGCTGTTGACAGGCAATCAATCATTAATTCCACTTTTGTGGAGTT
TGAGGAGATTGATGATTTCAAACTCACATTCGAGGTTGATTTCATAGGAG
AAACCGCTAAAGACAACGGTGGGGTCCGCATGGAATGGACCGGCTTAATC
AACAGAGCAATCTTTGAAAAGTACTTCGAAAATGGTCTAAAGGCGCATCT
TAGCAAGGACTATTTTTTGGTTGGTGTATTGGTTGGAATATCGCTCATTC
AGGGTGGCATTTCACCAAAGTTCTTTAAGGAAGAACAGCTGGAAGTGATA
TTTCATCATTCTGAGAAGGCTACGGAACCAATGAAACAACTGATCAGAGG
TCTGGAGGTGTTCCACCTCCATACCGTCTTTCAAAAATTTCCCATGTTGG
CCCACCTTTTCAGGAAGTCTGACTTCCAACTGAGCCCAAGATATTTGATG
AATCTCATCCAAACGGACTTTAAACCTAATGGATCACCCAGGGAAAAGAA
CATATACTCGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAA
GAGGCGAAATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGT
GAAGTGCCAGAGTTGGGCTTTGCTGTNGATTTGGTCACCCAGGGAAAAGA
ACATATACTCGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGA
AGAGGCGAAATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAG
TGAATGTTTGTAAACAATTTTCTGTGCCCAGGCTGTAATAAAAAAGTCTT
TAGAATAGGAGAAGAAGATATGTCTGAAAAATTTGTCAACGAGTTGTTGA
ATGAGCTGTGCGATTTGAATTGTCATGATCCAGTTGAAATGCTAAGGTTT
TTACAATCCAAATTAGTTAAAGGTCGTCAATTGTTCATCCCAGACATCAC
ACAGTACGAACCCAAAGGGGACGATTCGGTGAATTACATTGCTGTTGACA
GGCAATCAATCATTAATTCCACTTTTGTGGAGTTTGAGGAGATTGATGAT
TTCAAACTCACATTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038178-exon-sc0001790-1575043694:16916..17117 | TCONS_00038178-exon-sc0001790-1575043694:16916..17117 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1575043694:16508..16573 | TCONS_00038178-exon-sc0001790-1575043694:16508..16573 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1575043694:15248..15686 | TCONS_00038178-exon-sc0001790-1575043694:15248..15686 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1575043694:13733..15185 | TCONS_00038178-exon-sc0001790-1575043694:13733..15185 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1510915933:16916..17117 | TCONS_00038178-exon-sc0001790-1510915933:16916..17117 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1510915933:16508..16573 | TCONS_00038178-exon-sc0001790-1510915933:16508..16573 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1510915933:15248..15686 | TCONS_00038178-exon-sc0001790-1510915933:15248..15686 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1510915933:13733..15185 | TCONS_00038178-exon-sc0001790-1510915933:13733..15185 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1491911889:16916..17117 | TCONS_00038178-exon-sc0001790-1491911889:16916..17117 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1491911889:16508..16573 | TCONS_00038178-exon-sc0001790-1491911889:16508..16573 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1491911889:15248..15686 | TCONS_00038178-exon-sc0001790-1491911889:15248..15686 | Clytia hemisphaerica | exon |
| TCONS_00038178-exon-sc0001790-1491911889:13733..15185 | TCONS_00038178-exon-sc0001790-1491911889:13733..15185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001790 | supercontig | sc0001790:13733..17117 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
|
