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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038177 ID=TCONS_00038177|Name=TCONS_00038177|organism=Clytia hemisphaerica|type=transcript|length=2172bp
GCTTAGACCTGGCTGCATTTTTTGCAATATAATGTACTGGTACTGTTAGT
TTTACTATATACTATATTTTCAAGCGTATTGAACACTGGATCTCCCACTA
CTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATAGCCATGCA
TCAAACACTGGATCTCCCACTACTGGAACTTCATTAATTTCAATTATTGG
ATCTGAATTTGATAGCCAGACAAAAGACACGCTTGATGGGGATTTGATTT
GTCCAATTTGTCGGAAAGGAATATACATACCAGTAACGAAAGTGACAAAT
TGTGAATGTAAATACCATTACAGCTGTGTCGAGGGGGAATTGATGTTTGT
AAACAATTTTCTGTGCCCAGGCTgtaataaaaaagtctttagaATAGGAG
AAGAAGATATGTCTGAAAAATTTGTCAACGAGTTGTTGAATGAGCTGTGC
GATTTGAATTGTCATGATCCAGTTGAAATGCTAAGGTTTTTACAATCCAA
ATTAGTTAAAGGTCGTCAATTGTTCATCCCAGACATCACACAGTACGAAC
CCAAAGGGGACGATTCGGTGAATTACATTGCTGTTGACAGGCAATCAATC
ATTAATTCCACTTTTGTGGAGTTTGAGGAGATTGATGATTTCAAACTCAC
ATTCGAGGTTGATTTCATAGGAGAAANATGGAGTTTGAGGAGATAGATGA
TTTCAAACTCACATTCGAGGTTGATTTCATAGGAGAAACCGCTAAAGACA
ACGGTGGGGTCCGCATGGAATGGACCGGCTTAATCAACAGAGCAATCTTT
GAAAAGTACTTCGAAAATGGTCTAAAGGCGCATCTTAGCAAGGACTATTT
TTTGGTTGGTGTATTGGTTGGAATATCGCTCATTCAGGGTGGCATTTCAC
CAAAGTTCTTTAAGGAAGAACAGCTGGAAGTGATATTTCATCATTCTGAG
AAGGCTACGGAACCAATGAAACAACTGATCAGAGGTCTGGAGGTGTTCCA
CCTCCATACcgtctttcaaaaatttcccaTGTTGGCCCACCTTTTCAGGA
AGTCTGACTTCCAACTGAGCCCAAGATATTTGATGAATCTCATCCAAACG
GACTTTAAACCTAATGGATCACCCAGGGAAAAGAACATATACTCGTACTT
CGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGAGGCGAAATAACCC
TTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGAAGTGCCAGAGTTG
GGCTTTGCTGTNGATTTGGTCACCCAGGGAAAAGAACATATACTCGTACT
TCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGAGGCGAAATAACC
CTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGAAGTGCCAGAGTT
GGGCTTTGCTGTGccactgaaaatgatatttgttGACTCTACAGTTACAT
ATAAAATTATCAAGGTAAATTATTATATTGCTCAAAGAGATACTGGAGGT
CAAAATGCAGAATGCAAACCTTCTATAGTCTGGCGGTggtgtattttttt
ttctcaatttctcaATTTGTAAAAATTAGTTAGGGGTTGACCATCGTTCC
CTGAAtgagaaagatcaaaatttaaaaggttTGAACCATGGAATTAATGT
CTCATTGGCTACCAATATAAGAAAAGTCGtcataattgaaaattttttac
cattcgaaaaatcatgaaatagtGATTAATGAAAGGCTATATAATCTCGG
GTATCTAATTGATGTATATCGTACATAggtgtgtacatcaaattaaaTAG
GTTTGATTTTTAGAAAAGTCTATTCATGAAGTTGAAAGTGGAACAAAATT
AGACGAACAAGGAGAAAAAGAAGTTAACGAGCAGACACGTGAGACACCAC
TAGAAAAGACGAAGGATGAAGACAAAGAGGAAAATGTTGAGGAGAAGACT
GATGAATCGACGCCAGAAGACGAGAATGGTGAAGAGATAAAGGTGAAGGT
CATCGATTACACGCCTAAAGCGCACATTTGCGCCAACCAGATAGAAATGC
CGCGTGGCTTATTGGATGAAGAACTGCCACCCTTGgaaaagattttaaag
atttacgACTACGCATTTGCCAAtgcattttttggaaattattagAACAG
TCGCGAAACTTTAtaacaacat Run BLAST on NCBI transcript from alignment at sc0001790:13733..17061- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038177 ID=TCONS_00038177|Name=TCONS_00038177|organism=Clytia hemisphaerica|type=transcript|length=3329bp|location=Sequence derived from alignment at sc0001790:13733..17061- (Clytia hemisphaerica)
GCTTAGACCTGGCTGCATTTTTTGCAATATAATGTACTGGTACTGTTAGT
TTTACTATATACTATATTTTCAAGCGTATTGAACACTGGATCTCCCACTA
CTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATAGCCAGTAA
GTTAATTTTTATCATCCATCGTGATATTTGTCTCGCTGAATCTGAAACAG
TTGTAATGGCAAGTTTAGACCTGGCTTCACTCTATGTTATATTATGTATT
GGCGGTACTGAGAGTTTTACTATATTTTCCAGTGCATCAAACACTGGATC
TCCCACTACTGGAACTTCATTAATTTCAATTATTGGATCTGAATTTGATA
GCCAGTAAGTTGTTTTATCATCCATCGTAATCTTTGTCTCACTGAATCTG
AAACAGTTGTAATGGCAAGTTTAGACCTGGCTTCACTCTATGTTATATTA
TGTACTGGTAAGACTGAGAGTTTTACTATATTTTCCAGCGTATCGAACAC
TGTATCTACTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATA
GCCAGTAAGTTAATTTTTTACAATCCCATGTTTTATCATCCATTATGATA
TCTGACTGACTCAATTTAAAGCGGGACTCGGGTGGGATATTTTTTCTACC
CCCTAGCCTAAGGGTTTTGTAAGGAGAATCTTTTTACTTAAGGGGGGTCT
CGACCTCCATAAAACTTTTGGGATATGAAACAATCATAAATGACAGGTTT
AGACCACACTTCACTTGTGCTTTATTACGTTACTGGTACTGACCTGGCTT
CACTCTATGTTATATTATGTACTGGTAAGACTGAGAATTTTACTATATTT
TCCAGCGTATTGAACACTGGATCTCCCACTACTGGAACTTCATTTACTTC
AACCATTGGATCTGAATTTGATAGCCAGTAAGTTAATTTTTATGGTTTGT
TTCACTGGGAAAGACCTACTCTGTACTTTGTACCAAAGCCTGACGGAACA
AGGGGTCATGTCAGGATACCAATTCAGGGCCCCAAAACATGACTTCGAGA
TTTGAAAGTAGTAGACACCACCCCCTTAATTTTGTATCGATACCAACTTG
AAAATATAAATTTTCTAAAAAAAGTTACTAACACCCCTGTTGTGCACACT
TTTGTAATTGCGCAGGCACTTAATTACAAAACTGCGCAGCTCAAAAACAA
CAAAAGTGCGCAGAAAAATTACAAAAGTGCGCAAAAATTACAAAGCTGCG
CAAAAAAATTACAAAAGTGCGCAGAAATTACAAAAGTGCGCACAACACCC
CTAAATTAGTATCGATACCAACATGGGAAATCCAAGTTTAAATAGGGAAA
ACCGTTTACTTTGATTATCTTGCAGGACAAAAGACACGCTTGATGGGGAT
TTGATTTGTCCAATTTGTCGGAAAGGAATATACATACCAGTAACGAAAGT
GACAAATTGTGAATGTAAATACCATTACAGCTGTGTCGAGGGGGAATTGA
TGTTTGTAAACAATTTTCTGTGCCCAGGCTGTAATAAAAAAGTCTTTAGA
ATAGGAGAAGAAGATATGTCTGAAAAATTTGTCAACGAGTTGTTGAATGA
GCTGTGCGATTTGAATTGTCATGATCCAGTTGAAATGCTAAGGTTTTTAC
AATCCAAATTAGTTAAAGGTCGTCAATTGTTCATCCCAGACATCACACAG
TACGAACCCAAAGGGGACGATTCGGTGAATTACATTGCTGTTGACAGGCA
ATCAATCATTAATTCCACTTTTGTGGAGTTTGAGGAGATTGATGATTTCA
AACTCACATTCGAGGTTGATTTCATAGGAGAAANATGGAGTTTGAGGAGA
TAGATGATTTCAAACTCACATTCGAGGTTGATTTCATAGGAGAAACCGCT
AAAGACAACGGTGGGGTCCGCATGGAATGGACCGGCTTAATCAACAGAGC
AATCTTTGAAAAGTACTTCGAAAATGGTCTAAAGGCGCATCTTAGCAAGG
ACTATTTTTTGGTTGGTGTATTGGTTGGAATATCGCTCATTCAGGGTGGC
ATTTCACCAAAGTTCTTTAAGGAAGAACAGCTGGAAGTGATATTTCATCA
TTCTGAGAAGGCTACGGAACCAATGAAACAACTGATCAGAGGTCTGGAGG
TGTTCCACCTCCATACCGTCTTTCAAAAATTTCCCATGTTGGCCCACCTT
TTCAGGAAGTCTGACTTCCAACTGAGCCCAAGATATTTGATGAATCTCAT
CCAAACGGACTTTAAACCTAATGGATCACCCAGGGAAAAGAACATATACT
CGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGAGGCGAA
ATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGAAGTGCC
AGAGTTGGGCTTTGCTGTNGATTTGGTCACCCAGGGAAAAGAACATATAC
TCGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGAGGCGA
AATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGAAGTGC
CAGAGTTGGGCTTTGCTGTGCCACTGAAAATGATATTTGTTGACTCTACA
GTTACATATAAAATTATCAAGGTAAATTATTATATTGCTCAAAGAGATAC
TGGAGGTCAAAATGCAGAATGCAAACCTTCTATAGTCTGGCGGTGGTGTA
TTTTTTTTTCTCAATTTCTCAATTTGTAAAAATTAGTTAGGGGTTGACCA
TCGTTCCCTGAATGAGAAAGATCAAAATTTAAAAGGTTTGAACCATGGAA
TTAATGTCTCATTGGCTACCAATATAAGAAAAGTCGTCATAATTGAAAAT
TTTTTACCATTCGAAAAATCATGAAATAGTGATTAATGAAAGGCTATATA
ATCTCGGGTATCTAATTGATGTATATCGTACATAGGTGTGTACATCAAAT
TAAATAGGTTTGATTTTTAGAAAAGTCTATTCATGAAGTTGAAAGTGGAA
CAAAATTAGACGAACAAGGAGAAAAAGAAGTTAACGAGCAGACACGTGAG
ACACCACTAGAAAAGACGAAGGATGAAGACAAAGAGGAAAATGTTGAGGA
GAAGACTGATGAATCGACGCCAGAAGACGAGAATGGTGAAGAGATAAAGG
TGAAGGTCATCGATTACACGCCTAAAGCGCACATTTGCGCCAACCAGATA
GAAATGCCGCGTGGCTTATTGGATGAAGAACTGCCACCCTTGGAAAAGAT
TTTAAAGATTTACGACTACGCATTTGCCAATGCATTTTTTGGAAATTATT
AGAACAGTCGCGAAACTTTATAACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038177-exon-sc0001790-1575043694:16916..17061 | TCONS_00038177-exon-sc0001790-1575043694:16916..17061 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1575043694:16708..16779 | TCONS_00038177-exon-sc0001790-1575043694:16708..16779 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1575043694:13733..15686 | TCONS_00038177-exon-sc0001790-1575043694:13733..15686 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1510915933:16916..17061 | TCONS_00038177-exon-sc0001790-1510915933:16916..17061 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1510915933:16708..16779 | TCONS_00038177-exon-sc0001790-1510915933:16708..16779 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1510915933:13733..15686 | TCONS_00038177-exon-sc0001790-1510915933:13733..15686 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1491911889:16916..17061 | TCONS_00038177-exon-sc0001790-1491911889:16916..17061 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1491911889:16708..16779 | TCONS_00038177-exon-sc0001790-1491911889:16708..16779 | Clytia hemisphaerica | exon |
| TCONS_00038177-exon-sc0001790-1491911889:13733..15686 | TCONS_00038177-exon-sc0001790-1491911889:13733..15686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001790 | supercontig | sc0001790:13733..17061 - |
Blast
The following BLAST results are available for this feature:
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