TCONS_00038175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038175
Unique NameTCONS_00038175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2100

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038175 ID=TCONS_00038175|Name=TCONS_00038175|organism=Clytia hemisphaerica|type=transcript|length=2100bp
GCTTAGACCTGGCTGCATTTTTTGCAATATAATGTACTGGTACTGTTAGT
TTTACTATATACTATATTTTCAAGCGTATTGAACACTGGATCTCCCACTA
CTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATAGCCAGACA
AAAGACACGCTTGATGGGGATTTGATTTGTCCAATTTGTCGGAAAGGAAT
ATACATACCAGTAACGAAAGTGACAAATTGTGAATGTAAATACCATTACA
GCTGTGTCGAGGGGGAATTGATGTTTGTAAACAATTTTCTGTGCCCAGGC
TgtaataaaaaagtctttagaATAGGAGAAGAAGATATGTCTGAAAAATT
TGTCAACGAGTTGTTGAATGAGCTGTGCGATTTGAATTGTCATGATCCAG
TTGAAATGCTAAGGTTTTTACAATCCAAATTAGTTAAAGGTCGTCAATTG
TTCATCCCAGACATCACACAGTACGAACCCAAAGGGGACGATTCGGTGAA
TTACATTGCTGTTGACAGGCAATCAATCATTAATTCCACTTTTGTGGAGT
TTGAGGAGATTGATGATTTCAAACTCACATTCGAGGTTGATTTCATAGGA
GAAANATGGAGTTTGAGGAGATAGATGATTTCAAACTCACATTCGAGGTT
GATTTCATAGGAGAAACCGCTAAAGACAACGGTGGGGTCCGCATGGAATG
GACCGGCTTAATCAACAGAGCAATCTTTGAAAAGTACTTCGAAAATGGTC
TAAAGGCGCATCTTAGCAAGGACTATTTTTTGGTTGGTGTATTGGTTGGA
ATATCGCTCATTCAGGGTGGCATTTCACCAAAGTTCTTTAAGGAAGAACA
GCTGGAAGTGATATTTCATCATTCTGAGAAGGCTACGGAACCAATGAAAC
AACTGATCAGAGGTCTGGAGGTGTTCCACCTCCATACcgtctttcaaaaa
tttcccaTGTTGGCCCACCTTTTCAGGAAGTCTGACTTCCAACTGAGCCC
AAGATATTTGATGAATCTCATCCAAACGGACTTTAAACCTAATGGATCAC
CCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAGAGAAGTT
GCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGCGTTTTAT
AACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTNGATTTGGTCA
CCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAGAGAAGT
TGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGCGTTTTA
TAACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTGccactgaaa
atgatatttgttGACTCTACAGTTACATATAAAATTATCAAGGTAAATTA
TTATATTGCTCAAAGAGATACTGGAGGTCAAAATGCAGAATGCAAACCTT
CTATAGTCTGGCGGTggtgtatttttttttctcaatttctcaATTTGTAA
AAATTAGTTAGGGGTTGACCATCGTTCCCTGAAtgagaaagatcaaaatt
taaaaggttTGAACCATGGAATTAATGTCTCATTGGCTACCAATATAAGA
AAAGTCGtcataattgaaaattttttaccattcgaaaaatcatgaaatag
tGATTAATGAAAGGCTATATAATCTCGGGTATCTAATTGATGTATATCGT
ACATAggtgtgtacatcaaattaaaTAGGTTTGATTTTTAGAAAAGTCTA
TTCATGAAGTTGAAAGTGGAACAAAATTAGACGAACAAGGAGAAAAAGAA
GTTAACGAGCAGACACGTGAGACACCACTAGAAAAGACGAAGGATGAAGA
CAAAGAGGAAAATGTTGAGGAGAAGACTGATGAATCGACGCCAGAAGACG
AGAATGGTGAAGAGATAAAGGTGAAGGTCATCGATTACACGCCTAAAGCG
CACATTTGCGCCAACCAGATAGAAATGCCGCGTGGCTTATTGGATGAAGA
ACTGCCACCCTTGgaaaagattttaaagatttacgACTACGCATTTGCCA
AtgcattttttggaaattattagAACAGTCGCGAAACTTTAtaacaacat
Run BLAST on NCBI

transcript from alignment at sc0001790:13733..17061-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038175 ID=TCONS_00038175|Name=TCONS_00038175|organism=Clytia hemisphaerica|type=transcript|length=3329bp|location=Sequence derived from alignment at sc0001790:13733..17061- (Clytia hemisphaerica)
GCTTAGACCTGGCTGCATTTTTTGCAATATAATGTACTGGTACTGTTAGT
TTTACTATATACTATATTTTCAAGCGTATTGAACACTGGATCTCCCACTA
CTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATAGCCAGTAA
GTTAATTTTTATCATCCATCGTGATATTTGTCTCGCTGAATCTGAAACAG
TTGTAATGGCAAGTTTAGACCTGGCTTCACTCTATGTTATATTATGTATT
GGCGGTACTGAGAGTTTTACTATATTTTCCAGTGCATCAAACACTGGATC
TCCCACTACTGGAACTTCATTAATTTCAATTATTGGATCTGAATTTGATA
GCCAGTAAGTTGTTTTATCATCCATCGTAATCTTTGTCTCACTGAATCTG
AAACAGTTGTAATGGCAAGTTTAGACCTGGCTTCACTCTATGTTATATTA
TGTACTGGTAAGACTGAGAGTTTTACTATATTTTCCAGCGTATCGAACAC
TGTATCTACTGGAACTTCATTAATTTCAACCATTGGATCTGAATTTGATA
GCCAGTAAGTTAATTTTTTACAATCCCATGTTTTATCATCCATTATGATA
TCTGACTGACTCAATTTAAAGCGGGACTCGGGTGGGATATTTTTTCTACC
CCCTAGCCTAAGGGTTTTGTAAGGAGAATCTTTTTACTTAAGGGGGGTCT
CGACCTCCATAAAACTTTTGGGATATGAAACAATCATAAATGACAGGTTT
AGACCACACTTCACTTGTGCTTTATTACGTTACTGGTACTGACCTGGCTT
CACTCTATGTTATATTATGTACTGGTAAGACTGAGAATTTTACTATATTT
TCCAGCGTATTGAACACTGGATCTCCCACTACTGGAACTTCATTTACTTC
AACCATTGGATCTGAATTTGATAGCCAGTAAGTTAATTTTTATGGTTTGT
TTCACTGGGAAAGACCTACTCTGTACTTTGTACCAAAGCCTGACGGAACA
AGGGGTCATGTCAGGATACCAATTCAGGGCCCCAAAACATGACTTCGAGA
TTTGAAAGTAGTAGACACCACCCCCTTAATTTTGTATCGATACCAACTTG
AAAATATAAATTTTCTAAAAAAAGTTACTAACACCCCTGTTGTGCACACT
TTTGTAATTGCGCAGGCACTTAATTACAAAACTGCGCAGCTCAAAAACAA
CAAAAGTGCGCAGAAAAATTACAAAAGTGCGCAAAAATTACAAAGCTGCG
CAAAAAAATTACAAAAGTGCGCAGAAATTACAAAAGTGCGCACAACACCC
CTAAATTAGTATCGATACCAACATGGGAAATCCAAGTTTAAATAGGGAAA
ACCGTTTACTTTGATTATCTTGCAGGACAAAAGACACGCTTGATGGGGAT
TTGATTTGTCCAATTTGTCGGAAAGGAATATACATACCAGTAACGAAAGT
GACAAATTGTGAATGTAAATACCATTACAGCTGTGTCGAGGGGGAATTGA
TGTTTGTAAACAATTTTCTGTGCCCAGGCTGTAATAAAAAAGTCTTTAGA
ATAGGAGAAGAAGATATGTCTGAAAAATTTGTCAACGAGTTGTTGAATGA
GCTGTGCGATTTGAATTGTCATGATCCAGTTGAAATGCTAAGGTTTTTAC
AATCCAAATTAGTTAAAGGTCGTCAATTGTTCATCCCAGACATCACACAG
TACGAACCCAAAGGGGACGATTCGGTGAATTACATTGCTGTTGACAGGCA
ATCAATCATTAATTCCACTTTTGTGGAGTTTGAGGAGATTGATGATTTCA
AACTCACATTCGAGGTTGATTTCATAGGAGAAANATGGAGTTTGAGGAGA
TAGATGATTTCAAACTCACATTCGAGGTTGATTTCATAGGAGAAACCGCT
AAAGACAACGGTGGGGTCCGCATGGAATGGACCGGCTTAATCAACAGAGC
AATCTTTGAAAAGTACTTCGAAAATGGTCTAAAGGCGCATCTTAGCAAGG
ACTATTTTTTGGTTGGTGTATTGGTTGGAATATCGCTCATTCAGGGTGGC
ATTTCACCAAAGTTCTTTAAGGAAGAACAGCTGGAAGTGATATTTCATCA
TTCTGAGAAGGCTACGGAACCAATGAAACAACTGATCAGAGGTCTGGAGG
TGTTCCACCTCCATACCGTCTTTCAAAAATTTCCCATGTTGGCCCACCTT
TTCAGGAAGTCTGACTTCCAACTGAGCCCAAGATATTTGATGAATCTCAT
CCAAACGGACTTTAAACCTAATGGATCACCCAGGGAAAAGAACATATACT
CGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGAGGCGAA
ATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGAAGTGCC
AGAGTTGGGCTTTGCTGTNGATTTGGTCACCCAGGGAAAAGAACATATAC
TCGTACTTCGTCAAATATTTGAGAGAAGTTGCCGCAAAGCGAAGAGGCGA
AATAACCCTTGGACATGTACTGCGTTTTATAACCGGTTGCAGTGAAGTGC
CAGAGTTGGGCTTTGCTGTGCCACTGAAAATGATATTTGTTGACTCTACA
GTTACATATAAAATTATCAAGGTAAATTATTATATTGCTCAAAGAGATAC
TGGAGGTCAAAATGCAGAATGCAAACCTTCTATAGTCTGGCGGTGGTGTA
TTTTTTTTTCTCAATTTCTCAATTTGTAAAAATTAGTTAGGGGTTGACCA
TCGTTCCCTGAATGAGAAAGATCAAAATTTAAAAGGTTTGAACCATGGAA
TTAATGTCTCATTGGCTACCAATATAAGAAAAGTCGTCATAATTGAAAAT
TTTTTACCATTCGAAAAATCATGAAATAGTGATTAATGAAAGGCTATATA
ATCTCGGGTATCTAATTGATGTATATCGTACATAGGTGTGTACATCAAAT
TAAATAGGTTTGATTTTTAGAAAAGTCTATTCATGAAGTTGAAAGTGGAA
CAAAATTAGACGAACAAGGAGAAAAAGAAGTTAACGAGCAGACACGTGAG
ACACCACTAGAAAAGACGAAGGATGAAGACAAAGAGGAAAATGTTGAGGA
GAAGACTGATGAATCGACGCCAGAAGACGAGAATGGTGAAGAGATAAAGG
TGAAGGTCATCGATTACACGCCTAAAGCGCACATTTGCGCCAACCAGATA
GAAATGCCGCGTGGCTTATTGGATGAAGAACTGCCACCCTTGGAAAAGAT
TTTAAAGATTTACGACTACGCATTTGCCAATGCATTTTTTGGAAATTATT
AGAACAGTCGCGAAACTTTATAACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022812XLOC_022812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038175-exon-sc0001790-1575043694:16916..17061TCONS_00038175-exon-sc0001790-1575043694:16916..17061Clytia hemisphaericaexon
TCONS_00038175-exon-sc0001790-1575043694:13733..15686TCONS_00038175-exon-sc0001790-1575043694:13733..15686Clytia hemisphaericaexon
TCONS_00038175-exon-sc0001790-1510915933:16916..17061TCONS_00038175-exon-sc0001790-1510915933:16916..17061Clytia hemisphaericaexon
TCONS_00038175-exon-sc0001790-1510915933:13733..15686TCONS_00038175-exon-sc0001790-1510915933:13733..15686Clytia hemisphaericaexon
TCONS_00038175-exon-sc0001790-1491911889:16916..17061TCONS_00038175-exon-sc0001790-1491911889:16916..17061Clytia hemisphaericaexon
TCONS_00038175-exon-sc0001790-1491911889:13733..15686TCONS_00038175-exon-sc0001790-1491911889:13733..15686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001790supercontigsc0001790:13733..17061 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0532666	0.0685959	0	0.0144357	0	0	0	0	0.0215114	0	0	0	0	0.027455	0	0.021216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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