TCONS_00038174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038174
Unique NameTCONS_00038174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038174 ID=TCONS_00038174|Name=TCONS_00038174|organism=Clytia hemisphaerica|type=transcript|length=2157bp
AACACTGGATCTCCCACTACTGGAACTTCATTAATTTCAACCATTGGATC
TGAATTTGATAGCCACGTATCGAACACTGTATCTACTGGAACTTCATTAA
TTTCAACCATTGGATCTGAATTTGATAGCCACGTATTGAACACTGGATCT
CCCACTACTGGAACTTCATTTACTTCAACCATTGGATCTGAATTTGATAG
CCAGACAAAAGACACGCTTGATGGGGATTTGATTTGTCCAATTTGTCGGA
AAGGAATATACATACCAGTAACGAAAGTGACAAATTGTGAATGTAAATAC
CATTACAGCTGTGTCGAGGGGGAATTGATGTTTGTAAACAATTTTCTGTG
CCCAGGCTgtaataaaaaagtctttagaATAGGAGAAGAAGATATGTCTG
AAAAATTTGTCAACGAGTTGTTGAATGAGCTGTGCGATTTGAATTGTCAT
GATCCAGTTGAAATGCTAAGGTTTTTACAATCCAAATTAGTTAAAGGTCG
TCAATTGTTCATCCCAGACATCACACAGTACGAACCCAAAGGGGACGATT
CGGTGAATTACATTGCTGTTGACAGGCAATCAATCATTAATTCCACTTTT
GTGGAGTTTGAGGAGATTGATGATTTCAAACTCACATTCGAGGTTGATTT
CATAGGAGAAANATGGAGTTTGAGGAGATAGATGATTTCAAACTCACATT
CGAGGTTGATTTCATAGGAGAAACCGCTAAAGACAACGGTGGGGTCCGCA
TGGAATGGACCGGCTTAATCAACAGAGCAATCTTTGAAAAGTACTTCGAA
AATGGTCTAAAGGCGCATCTTAGCAAGGACTATTTTTTGGTTGGTGTATT
GGTTGGAATATCGCTCATTCAGGGTGGCATTTCACCAAAGTTCTTTAAGG
AAGAACAGCTGGAAGTGATATTTCATCATTCTGAGAAGGCTACGGAACCA
ATGAAACAACTGATCAGAGGTCTGGAGGTGTTCCACCTCCATACcgtctt
tcaaaaatttcccaTGTTGGCCCACCTTTTCAGGAAGTCTGACTTCCAAC
TGAGCCCAAGATATTTGATGAATCTCATCCAAACGGACTTTAAACCTAAT
GGATCACCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAG
AGAAGTTGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGC
GTTTTATAACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTNGAT
TTGGTCACCCAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGA
GAGAAGTTGCCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTG
CGTTTTATAACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTGcc
actgaaaatgatatttgttGACTCTACAGTTACATATAAAATTATCAAGG
TAAATTATTATATTGCTCAAAGAGATACTGGAGGTCAAAATGCAGAATGC
AAACCTTCTATAGTCTGGCGGTggtgtatttttttttctcaatttctcaA
TTTGTAAAAATTAGTTAGGGGTTGACCATCGTTCCCTGAAtgagaaagat
caaaatttaaaaggttTGAACCATGGAATTAATGTCTCATTGGCTACCAA
TATAAGAAAAGTCGtcataattgaaaattttttaccattcgaaaaatcat
gaaatagtGATTAATGAAAGGCTATATAATCTCGGGTATCTAATTGATGT
ATATCGTACATAggtgtgtacatcaaattaaaTAGGTTTGATTTTTAGAA
AAGTCTATTCATGAAGTTGAAAGTGGAACAAAATTAGACGAACAAGGAGA
AAAAGAAGTTAACGAGCAGACACGTGAGACACCACTAGAAAAGACGAAGG
ATGAAGACAAAGAGGAAAATGTTGAGGAGAAGACTGATGAATCGACGCCA
GAAGACGAGAATGGTGAAGAGATAAAGGTGAAGGTCATCGATTACACGCC
TAAAGCGCACATTTGCGCCAACCAGATAGAAATGCCGCGTGGCTTATTGG
ATGAAGAACTGCCACCCTTGgaaaagattttaaagatttacgACTACGCA
TTTGCCAAtgcattttttggaaattattagAACAGTCGCGAAACTTTAta
acaacat
Run BLAST on NCBI

transcript from alignment at sc0001790:13733..16980-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038174 ID=TCONS_00038174|Name=TCONS_00038174|organism=Clytia hemisphaerica|type=transcript|length=3248bp|location=Sequence derived from alignment at sc0001790:13733..16980- (Clytia hemisphaerica)
AACACTGGATCTCCCACTACTGGAACTTCATTAATTTCAACCATTGGATC
TGAATTTGATAGCCAGTAAGTTAATTTTTATCATCCATCGTGATATTTGT
CTCGCTGAATCTGAAACAGTTGTAATGGCAAGTTTAGACCTGGCTTCACT
CTATGTTATATTATGTATTGGCGGTACTGAGAGTTTTACTATATTTTCCA
GTGCATCAAACACTGGATCTCCCACTACTGGAACTTCATTAATTTCAATT
ATTGGATCTGAATTTGATAGCCAGTAAGTTGTTTTATCATCCATCGTAAT
CTTTGTCTCACTGAATCTGAAACAGTTGTAATGGCAAGTTTAGACCTGGC
TTCACTCTATGTTATATTATGTACTGGTAAGACTGAGAGTTTTACTATAT
TTTCCAGCGTATCGAACACTGTATCTACTGGAACTTCATTAATTTCAACC
ATTGGATCTGAATTTGATAGCCAGTAAGTTAATTTTTTACAATCCCATGT
TTTATCATCCATTATGATATCTGACTGACTCAATTTAAAGCGGGACTCGG
GTGGGATATTTTTTCTACCCCCTAGCCTAAGGGTTTTGTAAGGAGAATCT
TTTTACTTAAGGGGGGTCTCGACCTCCATAAAACTTTTGGGATATGAAAC
AATCATAAATGACAGGTTTAGACCACACTTCACTTGTGCTTTATTACGTT
ACTGGTACTGACCTGGCTTCACTCTATGTTATATTATGTACTGGTAAGAC
TGAGAATTTTACTATATTTTCCAGCGTATTGAACACTGGATCTCCCACTA
CTGGAACTTCATTTACTTCAACCATTGGATCTGAATTTGATAGCCAGTAA
GTTAATTTTTATGGTTTGTTTCACTGGGAAAGACCTACTCTGTACTTTGT
ACCAAAGCCTGACGGAACAAGGGGTCATGTCAGGATACCAATTCAGGGCC
CCAAAACATGACTTCGAGATTTGAAAGTAGTAGACACCACCCCCTTAATT
TTGTATCGATACCAACTTGAAAATATAAATTTTCTAAAAAAAGTTACTAA
CACCCCTGTTGTGCACACTTTTGTAATTGCGCAGGCACTTAATTACAAAA
CTGCGCAGCTCAAAAACAACAAAAGTGCGCAGAAAAATTACAAAAGTGCG
CAAAAATTACAAAGCTGCGCAAAAAAATTACAAAAGTGCGCAGAAATTAC
AAAAGTGCGCACAACACCCCTAAATTAGTATCGATACCAACATGGGAAAT
CCAAGTTTAAATAGGGAAAACCGTTTACTTTGATTATCTTGCAGGACAAA
AGACACGCTTGATGGGGATTTGATTTGTCCAATTTGTCGGAAAGGAATAT
ACATACCAGTAACGAAAGTGACAAATTGTGAATGTAAATACCATTACAGC
TGTGTCGAGGGGGAATTGATGTTTGTAAACAATTTTCTGTGCCCAGGCTG
TAATAAAAAAGTCTTTAGAATAGGAGAAGAAGATATGTCTGAAAAATTTG
TCAACGAGTTGTTGAATGAGCTGTGCGATTTGAATTGTCATGATCCAGTT
GAAATGCTAAGGTTTTTACAATCCAAATTAGTTAAAGGTCGTCAATTGTT
CATCCCAGACATCACACAGTACGAACCCAAAGGGGACGATTCGGTGAATT
ACATTGCTGTTGACAGGCAATCAATCATTAATTCCACTTTTGTGGAGTTT
GAGGAGATTGATGATTTCAAACTCACATTCGAGGTTGATTTCATAGGAGA
AANATGGAGTTTGAGGAGATAGATGATTTCAAACTCACATTCGAGGTTGA
TTTCATAGGAGAAACCGCTAAAGACAACGGTGGGGTCCGCATGGAATGGA
CCGGCTTAATCAACAGAGCAATCTTTGAAAAGTACTTCGAAAATGGTCTA
AAGGCGCATCTTAGCAAGGACTATTTTTTGGTTGGTGTATTGGTTGGAAT
ATCGCTCATTCAGGGTGGCATTTCACCAAAGTTCTTTAAGGAAGAACAGC
TGGAAGTGATATTTCATCATTCTGAGAAGGCTACGGAACCAATGAAACAA
CTGATCAGAGGTCTGGAGGTGTTCCACCTCCATACCGTCTTTCAAAAATT
TCCCATGTTGGCCCACCTTTTCAGGAAGTCTGACTTCCAACTGAGCCCAA
GATATTTGATGAATCTCATCCAAACGGACTTTAAACCTAATGGATCACCC
AGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAGAGAAGTTGC
CGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGCGTTTTATAA
CCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTNGATTTGGTCACC
CAGGGAAAAGAACATATACTCGTACTTCGTCAAATATTTGAGAGAAGTTG
CCGCAAAGCGAAGAGGCGAAATAACCCTTGGACATGTACTGCGTTTTATA
ACCGGTTGCAGTGAAGTGCCAGAGTTGGGCTTTGCTGTGCCACTGAAAAT
GATATTTGTTGACTCTACAGTTACATATAAAATTATCAAGGTAAATTATT
ATATTGCTCAAAGAGATACTGGAGGTCAAAATGCAGAATGCAAACCTTCT
ATAGTCTGGCGGTGGTGTATTTTTTTTTCTCAATTTCTCAATTTGTAAAA
ATTAGTTAGGGGTTGACCATCGTTCCCTGAATGAGAAAGATCAAAATTTA
AAAGGTTTGAACCATGGAATTAATGTCTCATTGGCTACCAATATAAGAAA
AGTCGTCATAATTGAAAATTTTTTACCATTCGAAAAATCATGAAATAGTG
ATTAATGAAAGGCTATATAATCTCGGGTATCTAATTGATGTATATCGTAC
ATAGGTGTGTACATCAAATTAAATAGGTTTGATTTTTAGAAAAGTCTATT
CATGAAGTTGAAAGTGGAACAAAATTAGACGAACAAGGAGAAAAAGAAGT
TAACGAGCAGACACGTGAGACACCACTAGAAAAGACGAAGGATGAAGACA
AAGAGGAAAATGTTGAGGAGAAGACTGATGAATCGACGCCAGAAGACGAG
AATGGTGAAGAGATAAAGGTGAAGGTCATCGATTACACGCCTAAAGCGCA
CATTTGCGCCAACCAGATAGAAATGCCGCGTGGCTTATTGGATGAAGAAC
TGCCACCCTTGGAAAAGATTTTAAAGATTTACGACTACGCATTTGCCAAT
GCATTTTTTGGAAATTATTAGAACAGTCGCGAAACTTTATAACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022812XLOC_022812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038174-exon-sc0001790-1575043694:16916..16980TCONS_00038174-exon-sc0001790-1575043694:16916..16980Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1575043694:16508..16573TCONS_00038174-exon-sc0001790-1575043694:16508..16573Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1575043694:16135..16206TCONS_00038174-exon-sc0001790-1575043694:16135..16206Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1575043694:13733..15686TCONS_00038174-exon-sc0001790-1575043694:13733..15686Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1510915933:16916..16980TCONS_00038174-exon-sc0001790-1510915933:16916..16980Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1510915933:16508..16573TCONS_00038174-exon-sc0001790-1510915933:16508..16573Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1510915933:16135..16206TCONS_00038174-exon-sc0001790-1510915933:16135..16206Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1510915933:13733..15686TCONS_00038174-exon-sc0001790-1510915933:13733..15686Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1491911889:16916..16980TCONS_00038174-exon-sc0001790-1491911889:16916..16980Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1491911889:16508..16573TCONS_00038174-exon-sc0001790-1491911889:16508..16573Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1491911889:16135..16206TCONS_00038174-exon-sc0001790-1491911889:16135..16206Clytia hemisphaericaexon
TCONS_00038174-exon-sc0001790-1491911889:13733..15686TCONS_00038174-exon-sc0001790-1491911889:13733..15686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001790supercontigsc0001790:13733..16980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.72643e-06	0.00589055	0.755172	1.67135	1.42947	2.13734	1.69735	3.89294e-05	0.00839502	0.543356	0	0	0	0	0	0	0	0	0	0	0.63193	1.93687	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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