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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038165 ID=TCONS_00038165|Name=TCONS_00038165|organism=Clytia hemisphaerica|type=transcript|length=1297bp
TCATTGCAAAGCGAAAAATTACATAATGATGATAAATCACAGAAGaaaga
attatcaaaagaaGGAAACTCACAAAGAGACGAAAAATTACTAAATGCCA
AGGAATCACCAAAACGCGGAGAGTCtcgaaaagacaaaaaattgcaaCAT
AGCCAGGAATCACCGAAAAACGAAGGATccttgaaagaagaaaaattaca
acaTGACGAGGAGTCGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCC
TGAAAGACGATAAATCCTTGAAAGACAAACAATTAAGAACAAACAAAAAG
CCACTTGAACAGAAGGATTTACAGAAGACCGATGGATCACCAAAGGATGA
CAAATTACAGAAGGACGAAAAACTACCcaatgaagaaaaatttcaaaagG
TCGAACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGATGAA
ATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATATACATAAAGACGA
TGAATCACCGAAAAAAGAATTACCAAAAGACAAAGAATCTCTGAAAGACG
ATAAATCCTCGGAAGACAAACAATTAAGAAAGAACGAAAAGCCACTCGAA
CAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACAACAAATTCCA
GAACAACGAAAAACTACCCAATGAAGAAAAATTTCGCAATGTCAAACACA
AGCAAGAACTGACAGAAAATAGTGATGCTGACAGTGATGAATTGTTTGTA
CTGGACAAGGCTGATGTGTGGAGTAATAATGATACTGGAAATACTCGAAG
ATCCtcaagaaaacgaaaaaaaacgATCAGCTACAAAGGGATGGAATTAG
AACATGATGGCCTAGAAACGTTTGGTGATCCTGACTTTATCCGTAAGCTA
CTTTTATTGTGTTTAACATTGAGGAAGTATTATTAAATCATAATCATGGA
GATTTATGCTGTCGTAAAAATGCATGCAAGATATAGAAcacatgaaaaat
gaaacaggaaataaaatttaagaaaaattaatcGCTTGTTTTAAAACGTT
TTGGCTATATCTGAAAAGTGATTTTAATTCTCAGGTACCAAATAACCGGG
GCTGGGCGGACAGGCGTGTGTTTGCGGTGATGGACAAAATGTGTACTTtc
tcactttttctttttttgtaccATGGTACTAACTTGTAATTTATGTTCAA
AATAGGGGGACCACCCCTTTGTACCATGGTACTAGCttttaatttaaaat
caaaagtgGTGGACAACCCTTTTAGCATAGGACACTTTTTAGAAATT Run BLAST on NCBI transcript from alignment at sc0001788:35285..40478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038165 ID=TCONS_00038165|Name=TCONS_00038165|organism=Clytia hemisphaerica|type=transcript|length=5194bp|location=Sequence derived from alignment at sc0001788:35285..40478+ (Clytia hemisphaerica)
TCATTGCAAAGCGAAAAATTACATAATGATGATAAATCACAGAAGaaaga
attatcaaaagaaGGAAACTCACAAAGAGACGAAAAATTACTAAATGCCA
AGGAATCACCAAAACGCGGAGAGTCtcgaaaagacaaaaaattgcaaCAT
AGCCAGGAATCACCGAAAAACGAAGGATccttgaaagaagaaaaattaca
acaTGACGAGGAGTCGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCC
TGAAAGACGATAAATCCTTGAAAGACAAACAATTAAGAACAAACAAAAAG
CCACTTGAACAGAAGGATTTACAGAAGACCGATGGATCACCAAAGGATGA
CAAATTACAGAAGGACGAAAAACTACCcaatgaagaaaaatttcaaaagg
tcGAACACAAGCAAGAACTGGTAGAAGATAGTGATGATGACAGGGATGAA
ATGTTTGTACTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATCAAAG
CTCTGTTTAAAAAAGCGATATTAGAgttaaaaagttacaaatttttgaaa
ttctttaatggTAGTTGGGAGTCAGTAGTATCTTTAGCGTAATTAAGAAA
CGTTTTTTACCAACATTCCTATGACTAGCTGGCTGTATCATTTGAGGCGT
GCGATAGTATgcgcacacctccacacacCTGAAATGTCTTAGGAGTGCGA
TTTATTGCAAGCCATAAAATTAGTTTTACAACTCAAAGTTGAGCATAGCA
CTCCTAATCGCAAGATGGATTCACTTGTTATCATGTGATTATATATACTA
ATCAGTAATCACACAtctaaattactaaaattaaggttttagGAGTGTTT
TTTTGTACTCTGTACTAAAAGATAGCCGTTATGAACAATCTCGTTTCATA
ACGATTTTCCAGTGCATAAAGACGATGAACCACCTAAAGAAGAATTACCA
AAAGACGAAGAATCTCTGAAAGACGATAAATCCTTGAAAGACAAACAATT
ACGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATG
GATCACCAAAGGACGACAAATTACAGAAGGATGAAAAATTACCCAATGAA
GAAGAATTTCGAAAGGTCGAACACAAGCAAGAACTGATAGAAAATAGTGA
TGCTGACAGTGATGAAATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTA
ATAGTAAGTATTGAAGCTCTGTTTAAAATAGCGATATTAGAgttaaaaag
ttacaaaattttgaaattctttcccTAATGATAGTCGGGAGTCAGAAGTT
CCTTTAGCCTAATTAAGAAACGTCTTTTACCAACATTCCTTTGGCTAGAC
attttttgtactttgtacTAATAGTTGGCCGTAATAAACAATCTTGTTTT
ATAATGATTTTCCAGTACATAAAGACGATGAATCACCGAAAAAAGAATTA
CCAAAAGACAAAGAATCTCTGAAAGACGATAAATCCTCGGAAGACAAACA
ATTAAGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTACAGAAGACCG
ATGGATCACCAAAGGACAACAAATTCCAGAACAACGAAAAACTACCcaat
gaagaaaattttcgCAATGTCAAACACAAGCAAGAACTGACAGAAAATAG
TGATGCTGACAGTGATGAATTATTTGTACTGGACAAGGCTGATGTGTGGA
GTAATAGTAAGTATCAAAACTCTGTTTAAATTAGCGATATTAGAgttaaa
aagttacaaatttttgaaattctttctcTAGGTAGTCAGGGGTCAGTAGT
TCCTTTAGCCTAATTAAGAAACGTCTTTTACCAACATTCCTATGACTAGA
CATTTTTAGTACTCTGTTTTTCCAGAGACAAATAACTGTTATAAATACCG
ATTTTTGCCGTTTCACCAGGTTTCACACACATTATAGCTCCTCTCAGACT
TATCCAGCATCCCCTGTTTCACAAAGGAGGATTTTAAAAGAAACCTCCTC
TCTAAAACTTCTAANCGTTATAAATACCGATTTTTGCCGTTTCACCAGGT
TTCACACACATTATAGCTCCTCTCAGACTTATCCAGCATCCCCTGTTTTA
CAAAGGAGGATTTTAAAAGAAACCTCCTCTCTAAAACTTCTAACAGCTAT
ATAATAAATTATGTTGTTGAGATATCTTTGTTAGTTGATTTTCCAACCTC
ttcttgtgttttttttttaaccaaaccttttttttttggtcaCTTTGGTG
TTTTTCGgagaaatttaatgaaaattttagcttcaaagAGAAAGTGACCT
GTTATAAACCATTTGAAAGctcccaaaaaataaaaacaagattaGAGAAA
TTACAGAAGGACGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGA
ACACAAGCAAGAACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGT
TTGTACTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCT
GTTTAAAAAAGCGATATTAGAgttaaaaagttacaaatttttgaaattct
ttaatggTAGTTGGGAGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTT
TTTTACCAACATTCCTATGACTAGCTGGCTGTATCATTTGAGGCGTGCGA
TAGTATgcgcacacctccacacacCTGAAATGTCTTAGGAGTGCGATTTA
TTGCAAGCCATAAAATTAGTTTTACAACTCAAAGTTGAGCATAGCACTCC
TAATCGCAAGATGGATTCACTTGTTATCATGTGATTATATATACTAATCA
GTAATCACACAtctaaattactaaaattaaggttttagGAGTGTTTTTTT
GTACTCTGTACTAAAAGATAGCCGTTATGAACAATCTCGTTTCATAACGA
TTTTCCAGTGCATAAAGACGATGAACCACCTAAAGAAGAATTACCAAAAG
ACGAAGAATCTCTGAAAGACGATAAATCCTTGAAAGACAAACAATTACGA
AAGAACGAAAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATC
ACCAAAGGACGACAAATTACAGAAGGATGAAAAATTACCCAATGAAGAAG
AATTTCGAAAGGTCGAACACAAGCAAGAACTGATAGAAAATAGTGATGCT
GACAGTGATGAAATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAG
TAAGTATTGAAGCTCTGTTTAAAATAGCGATATTAGAGTTAAAAAGTTAC
AAAATTTTGAAATTCTTTCCCTAATGATAGTCGGGAGTCAGAAGTTCCTT
TAGCCTAATTAAGAAACGTCTTTTACCAACATTCCTATGGCTAGACATTT
TTTGTACTTTGTACTAATAGTTGGCCGTAATAAACAATCTTGTTTTATAA
TGATTTTCAAGTACATAAAGACGATGAATCACCGAAAAAAGAATTACCAA
AAGACAAAGAATCTCTGAAAGACGATAAATCCTCGGAAGACAAACAATTA
AGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGG
ATCACCAAAGGACAACAAATTCCAGAACAACGAAAAACTACCCAATGAAG
AAAAATTTCGCAATGTCAAACACAAGCAAGAACTGACAGAAAATAGTGAT
GCTGACAGTGATGAATTGTTTGTACTGGACAAGGCTGATGTGTGGAGTAA
TAGTAAGTATCAAAACTCTGTTTAAATTAGCGATATTAGAGTTAAAAAGT
TACAAATTTTTGAAATTCTTTCTCTAGGTAGTCGGGAGTCAGTAGTTCCT
TTAGCCTAATTAAGAAACGTCTTTTACCAACATTCCTATGACTAGACATT
TTTAGTACTCTGTTTTTCCAGAGACAAATGGCCGTCATAAATACCAATTT
TTGCCGTTTCACCAGGTTTCACACACATTATAGCTCCTGTCAGACTTATC
CAGCATCCCCAGGAGGTTTTTGAAGAGCATTTAAAGCAGGATTTTAAAAG
AAACCTCCTCTCTAAAACTTCTAACAGCTATATAATAAATTATGTTGTTG
AGATATCTTTGTTAGTTGATTTTCCAACCTCTTCTTATGTTTTTTTTAAA
ACCAAACCTTTTTCTTTGGTCACTTTGGTGTTTTTCGGAGAAATTTAATG
AAAATTTTAGCTTCAAAGAGAAAGTGACCTGTTATAAACCATTCGAAAGC
TCCCAAAAAATAAAAACAAGATTAGAGATGTATTGGGAGTATAGGTGGTT
TCTCTACCTAACTCCGGATACTAAGCTTCAAAGAGAGCAAAAACCAGAGA
AGACAGCTGTTCCTGGCTAAAAATCACTCAGAAATCATCTATACATTACC
TGTAATATATATCTAATCTCACTGCGTTTGTTCCATTCGGCTCCAATGTC
AGTCCATTTTTTCTCGAATGGACCTCCTAAACAGTTACTTAGTAGTATGC
GTATTATAACATCTCTCTTTTCTAAAGCCAAAAtgttcattaaattttga
ttcttgcctgagaccgtcatttTTCTCCCCGGAAAACACACCAAAGTGTG
AACTTTGCATAACACAAATTGAACAGATCCCTCCACTAAGCTTTTTCTAC
GTTTCAGATGATACTGGAAATACTCGAAGATCCtcaagaaaacgaaaaaa
aacgATCAGCTACAAAGGGNTTCAGATGATACTGGAAATACTCGAAGATC
CtcaagaaaacgaaaaaaaacgATCAGCTACAAAGGGATGGAATTAGAAC
ATGATGGCCTAGAAACGTTTGGTGATCCTGACTTTATCCGTAAGCTACTT
TTATTGTGTTTAACATTGAGGAAGTATTATTAAATCATAATCATGGAGAT
TTATGCTGTCGTAAAAATGCATGCAAGATATAGAAcacatgaaaaatgaa
acaggaaataaaatttaagaaaaattaatcGCTTGTTTTAAAACGTTTTG
GCTATATCTGAAAAGTGATTTTAATTCTCAGGTACCAAATAACCGGGGCT
GGGCGGACAGGCGTGTGTTTGCGGTGATGGACAAAATGTGTACTTtctca
ctttttctttttttgtaccATGGTACTAACTTGTAATTTATGTTCAAAAT
AGGGGGACCACCCCTTTGTACCATGGTACTAGCttttaatttaaaatcaa
aagtgGTGGACAACCCTTTTAGCATAGGACACTTTTTAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038165-exon-sc0001788-1491911889:35285..35683 | TCONS_00038165-exon-sc0001788-1491911889:35285..35683 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1510915933:35285..35683 | TCONS_00038165-exon-sc0001788-1510915933:35285..35683 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1575043694:35285..35683 | TCONS_00038165-exon-sc0001788-1575043694:35285..35683 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1491911889:38396..38483 | TCONS_00038165-exon-sc0001788-1491911889:38396..38483 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1510915933:38396..38483 | TCONS_00038165-exon-sc0001788-1510915933:38396..38483 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1575043694:38396..38483 | TCONS_00038165-exon-sc0001788-1575043694:38396..38483 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1491911889:38696..38986 | TCONS_00038165-exon-sc0001788-1491911889:38696..38986 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1510915933:38696..38986 | TCONS_00038165-exon-sc0001788-1510915933:38696..38986 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1575043694:38696..38986 | TCONS_00038165-exon-sc0001788-1575043694:38696..38986 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1491911889:39960..40478 | TCONS_00038165-exon-sc0001788-1491911889:39960..40478 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1510915933:39960..40478 | TCONS_00038165-exon-sc0001788-1510915933:39960..40478 | Clytia hemisphaerica | exon |
| TCONS_00038165-exon-sc0001788-1575043694:39960..40478 | TCONS_00038165-exon-sc0001788-1575043694:39960..40478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:35285..40478 + |
Blast
The following BLAST results are available for this feature:
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