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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038161 ID=TCONS_00038161|Name=TCONS_00038161|organism=Clytia hemisphaerica|type=transcript|length=875bp
tacTGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGCGAA
AAATTACATAATGATGATAAATCACAGAAGaaagaattatcaaaagaaGG
AAACTCACAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAAAAC
GCGGAGAGTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCACCG
AAAAACGAAGGATccttgaaagaagaaaaattacaacaTGACGAGGAGTC
GCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATAAAT
CCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAGAAG
GATTTACAGAAGACCGATGGATCACCAAAGGATGACAAATTACAGAAGGA
CGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAAG
AACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGAC
AAGTCTGACGTGTGGAGTAATATACATAAAGACGATGAATCACCGAAAAA
AGAATTACCAAAAGACAAAGAATCTCTGAAAGACGATAAATCCTCGGAAG
ACAAACAATTAAGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTACAG
AAGACCGATGGATCACCAAAGGACAACAAATTCCAGAACAACGAAAAACT
ACCcaatgaagaaaattttcgCAATGTCAAACACAAGCAAGAACTGACAG
AAAATAGTGATGCTGACAGTGATGAATTATTTGTACTGGACAAGGCTGAT
GTGTGGAGTAATAATGATACTGGAAATACTCGAAGATCCtcaagaaaacg
aaaaaaaacgATCAGCTACAAAGGG Run BLAST on NCBI transcript from alignment at sc0001788:35250..39953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038161 ID=TCONS_00038161|Name=TCONS_00038161|organism=Clytia hemisphaerica|type=transcript|length=4704bp|location=Sequence derived from alignment at sc0001788:35250..39953+ (Clytia hemisphaerica)
tacTGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGCGAA
AAATTACATAATGATGATAAATCACAGAAGaaagaattatcaaaagaaGG
AAACTCACAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAAAAC
GCGGAGAGTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCACCG
AAAAACGAAGGATccttgaaagaagaaaaattacaacaTGACGAGGAGTC
GCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATAAAT
CCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAGAAG
GATTTACAGAAGACCGATGGATCACCAAAGGATGACAAATTACAGAAGGA
CGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAAG
AACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGAC
AAGTCTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCTGTTTAAAAAAG
CGATATTAGAgttaaaaagttacaaatttttgaaattctttaatggTAGT
TGGGAGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTTTTTTACCAACA
TTCCTATGACTAGCTGGCTGTATCATTTGAGGCGTGCGATAGTATgcgca
cacctccacacacCTGAAATGTCTTAGGAGTGCGATTTATTGCAAGCCAT
AAAATTAGTTTTACAACTCAAAGTTGAGCATAGCACTCCTAATCGCAAGA
TGGATTCACTTGTTATCATGTGATTATATATACTAATCAGTAATCACACA
tctaaattactaaaattaaggttttagGAGTGTTTTTTTGTACTCTGTAC
TAAAAGATAGCCGTTATGAACAATCTCGTTTCATAACGATTTTCCAGTGC
ATAAAGACGATGAACCACCTAAAGAAGAATTACCAAAAGACGAAGAATCT
CTGAAAGACGATAAATCCTTGAAAGACAAACAATTACGAAAGAACGAAAA
GCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACG
ACAAATTACAGAAGGATGAAAAATTACCCAATGAAGAAGAATTTCGAAAG
GTCGAACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGATGA
AATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATTGAA
GCTCTGTTTAAAATAGCGATATTAGAgttaaaaagttacaaaattttgaa
attctttcccTAATGATAGTCGGGAGTCAGAAGTTCCTTTAGCCTAATTA
AGAAACGTCTTTTACCAACATTCCTTTGGCTAGACattttttgtactttg
tacTAATAGTTGGCCGTAATAAACAATCTTGTTTTATAATGATTTTCCAG
TACATAAAGACGATGAATCACCGAAAAAAGAATTACCAAAAGACAAAGAA
TCTCTGAAAGACGATAAATCCTCGGAAGACAAACAATTAAGAAAGAACGA
AAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGG
ACAACAAATTCCAGAACAACGAAAAACTACCcaatgaagaaaattttcgC
AATGTCAAACACAAGCAAGAACTGACAGAAAATAGTGATGCTGACAGTGA
TGAATTATTTGTACTGGACAAGGCTGATGTGTGGAGTAATAGTAAGTATC
AAAACTCTGTTTAAATTAGCGATATTAGAgttaaaaagttacaaattttt
gaaattctttctcTAGGTAGTCAGGGGTCAGTAGTTCCTTTAGCCTAATT
AAGAAACGTCTTTTACCAACATTCCTATGACTAGACATTTTTAGTACTCT
GTTTTTCCAGAGACAAATAACTGTTATAAATACCGATTTTTGCCGTTTCA
CCAGGTTTCACACACATTATAGCTCCTCTCAGACTTATCCAGCATCCCCT
GTTTCACAAAGGAGGATTTTAAAAGAAACCTCCTCTCTAAAACTTCTAAN
CGTTATAAATACCGATTTTTGCCGTTTCACCAGGTTTCACACACATTATA
GCTCCTCTCAGACTTATCCAGCATCCCCTGTTTTACAAAGGAGGATTTTA
AAAGAAACCTCCTCTCTAAAACTTCTAACAGCTATATAATAAATTATGTT
GTTGAGATATCTTTGTTAGTTGATTTTCCAACCTCttcttgtgttttttt
tttaaccaaaccttttttttttggtcaCTTTGGTGTTTTTCGgagaaatt
taatgaaaattttagcttcaaagAGAAAGTGACCTGTTATAAACCATTTG
AAAGctcccaaaaaataaaaacaagattaGAGAAATTACAGAAGGACGAA
AAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAAGAACT
GGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGACAAGT
CTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCTGTTTAAAAAAGCGAT
ATTAGAgttaaaaagttacaaatttttgaaattctttaatggTAGTTGGG
AGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTTTTTTACCAACATTCC
TATGACTAGCTGGCTGTATCATTTGAGGCGTGCGATAGTATgcgcacacc
tccacacacCTGAAATGTCTTAGGAGTGCGATTTATTGCAAGCCATAAAA
TTAGTTTTACAACTCAAAGTTGAGCATAGCACTCCTAATCGCAAGATGGA
TTCACTTGTTATCATGTGATTATATATACTAATCAGTAATCACACAtcta
aattactaaaattaaggttttagGAGTGTTTTTTTGTACTCTGTACTAAA
AGATAGCCGTTATGAACAATCTCGTTTCATAACGATTTTCCAGTGCATAA
AGACGATGAACCACCTAAAGAAGAATTACCAAAAGACGAAGAATCTCTGA
AAGACGATAAATCCTTGAAAGACAAACAATTACGAAAGAACGAAAAGCCA
CTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACGACAA
ATTACAGAAGGATGAAAAATTACCCAATGAAGAAGAATTTCGAAAGGTCG
AACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGATGAAATG
TTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATTGAAGCTC
TGTTTAAAATAGCGATATTAGAGTTAAAAAGTTACAAAATTTTGAAATTC
TTTCCCTAATGATAGTCGGGAGTCAGAAGTTCCTTTAGCCTAATTAAGAA
ACGTCTTTTACCAACATTCCTATGGCTAGACATTTTTTGTACTTTGTACT
AATAGTTGGCCGTAATAAACAATCTTGTTTTATAATGATTTTCAAGTACA
TAAAGACGATGAATCACCGAAAAAAGAATTACCAAAAGACAAAGAATCTC
TGAAAGACGATAAATCCTCGGAAGACAAACAATTAAGAAAGAACGAAAAG
CCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACAA
CAAATTCCAGAACAACGAAAAACTACCCAATGAAGAAAAATTTCGCAATG
TCAAACACAAGCAAGAACTGACAGAAAATAGTGATGCTGACAGTGATGAA
TTGTTTGTACTGGACAAGGCTGATGTGTGGAGTAATAGTAAGTATCAAAA
CTCTGTTTAAATTAGCGATATTAGAGTTAAAAAGTTACAAATTTTTGAAA
TTCTTTCTCTAGGTAGTCGGGAGTCAGTAGTTCCTTTAGCCTAATTAAGA
AACGTCTTTTACCAACATTCCTATGACTAGACATTTTTAGTACTCTGTTT
TTCCAGAGACAAATGGCCGTCATAAATACCAATTTTTGCCGTTTCACCAG
GTTTCACACACATTATAGCTCCTGTCAGACTTATCCAGCATCCCCAGGAG
GTTTTTGAAGAGCATTTAAAGCAGGATTTTAAAAGAAACCTCCTCTCTAA
AACTTCTAACAGCTATATAATAAATTATGTTGTTGAGATATCTTTGTTAG
TTGATTTTCCAACCTCTTCTTATGTTTTTTTTAAAACCAAACCTTTTTCT
TTGGTCACTTTGGTGTTTTTCGGAGAAATTTAATGAAAATTTTAGCTTCA
AAGAGAAAGTGACCTGTTATAAACCATTCGAAAGCTCCCAAAAAATAAAA
ACAAGATTAGAGATGTATTGGGAGTATAGGTGGTTTCTCTACCTAACTCC
GGATACTAAGCTTCAAAGAGAGCAAAAACCAGAGAAGACAGCTGTTCCTG
GCTAAAAATCACTCAGAAATCATCTATACATTACCTGTAATATATATCTA
ATCTCACTGCGTTTGTTCCATTCGGCTCCAATGTCAGTCCATTTTTTCTC
GAATGGACCTCCTAAACAGTTACTTAGTAGTATGCGTATTATAACATCTC
TCTTTTCTAAAGCCAAAAtgttcattaaattttgattcttgcctgagacc
gtcatttTTCTCCCCGGAAAACACACCAAAGTGTGAACTTTGCATAACAC
AAATTGAACAGATCCCTCCACTAAGCTTTTTCTACGTTTCAGATGATACT
GGAAATACTCGAAGATCCtcaagaaaacgaaaaaaaacgATCAGCTACAA
AGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038161-exon-sc0001788-1491911889:35250..35771 | TCONS_00038161-exon-sc0001788-1491911889:35250..35771 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1510915933:35250..35771 | TCONS_00038161-exon-sc0001788-1510915933:35250..35771 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1575043694:35250..35771 | TCONS_00038161-exon-sc0001788-1575043694:35250..35771 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1491911889:36700..36990 | TCONS_00038161-exon-sc0001788-1491911889:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1510915933:36700..36990 | TCONS_00038161-exon-sc0001788-1510915933:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1575043694:36700..36990 | TCONS_00038161-exon-sc0001788-1575043694:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1491911889:39892..39953 | TCONS_00038161-exon-sc0001788-1491911889:39892..39953 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1510915933:39892..39953 | TCONS_00038161-exon-sc0001788-1510915933:39892..39953 | Clytia hemisphaerica | exon |
| TCONS_00038161-exon-sc0001788-1575043694:39892..39953 | TCONS_00038161-exon-sc0001788-1575043694:39892..39953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:35250..39953 + |
Blast
The following BLAST results are available for this feature:
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