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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038160 ID=TCONS_00038160|Name=TCONS_00038160|organism=Clytia hemisphaerica|type=transcript|length=1333bp
gtacTGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGCGA
AAAATTACATAATGATGATAAATCACAGAAGaaagaattatcaaaagaaG
GAAACTCACAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAAAA
CGCGGAGAGTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCACC
GAAAAACGAAGGATccttgaaagaagaaaaattacaacaTGACGAGGAGT
CGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATAAA
TCCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAGAA
GGATTTACAGAAGACCGATGGATCACCAAAGGATGACAAATTACAGAAGG
ACGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAA
GAACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGA
CAAGTCTGACGTGTGGAGTAATATACATAAAGACGATGAATCACCGAAAA
AAGAATTACCAAAAGACAAAGAATCTCTGAAAGACGATAAATCCTCGGAA
GACAAACAATTAAGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTACA
GAAGACCGATGGATCACCAAAGGACAACAAATTCCAGAACAACGAAAAAC
TACCcaatgaagaaaattttcgCAATGTCAAACACAAGCAAGAACTGACA
GAAAATAGTGATGCTGACAGTGATGAATTATTTGTACTGGACAAGGCTGA
TGTGTGGAGTAATAATGATACTGGAAATACTCGAAGATCCtcaagaaaac
gaaaaaaaacgATCAGCTACAAAGGGATGGAATTAGAACATGATGGCCTA
GAAACGTTTGGTGATCCTGACTTTATCCGTAAGCTACTTTTATTGTGTTT
AACATTGAGGAAGTATTATTAAATCATAATCATGGAGATTTATGCTGTCG
TAAAAATGCATGCAAGATATAGAAcacatgaaaaatgaaacaggaaataa
aatttaagaaaaattaatcGCTTGTTTTAAAACGTTTTGGCTATATCTGA
AAAGTGATTTTAATTCTCAGGTACCAAATAACCGGGGCTGGGCGGACAGG
CGTGTGTTTGCGGTGATGGACAAAATGTGTACTTtctcactttttctttt
tttgtaccATGGTACTAACTTGTAATTTATGTTCAAAATAGGGGGACCAC
CCCTTTGTACCATGGTACTAGCttttaatttaaaatcaaaagtgGTGGAC
AACCCTTTTAGCATAGGACACTTTTTAGAAATT Run BLAST on NCBI transcript from alignment at sc0001788:35249..40478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038160 ID=TCONS_00038160|Name=TCONS_00038160|organism=Clytia hemisphaerica|type=transcript|length=5230bp|location=Sequence derived from alignment at sc0001788:35249..40478+ (Clytia hemisphaerica)
gtacTGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGCGA
AAAATTACATAATGATGATAAATCACAGAAGaaagaattatcaaaagaaG
GAAACTCACAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAAAA
CGCGGAGAGTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCACC
GAAAAACGAAGGATccttgaaagaagaaaaattacaacaTGACGAGGAGT
CGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATAAA
TCCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAGAA
GGATTTACAGAAGACCGATGGATCACCAAAGGATGACAAATTACAGAAGG
ACGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAA
GAACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGA
CAAGTCTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCTGTTTAAAAAA
GCGATATTAGAgttaaaaagttacaaatttttgaaattctttaatggTAG
TTGGGAGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTTTTTTACCAAC
ATTCCTATGACTAGCTGGCTGTATCATTTGAGGCGTGCGATAGTATgcgc
acacctccacacacCTGAAATGTCTTAGGAGTGCGATTTATTGCAAGCCA
TAAAATTAGTTTTACAACTCAAAGTTGAGCATAGCACTCCTAATCGCAAG
ATGGATTCACTTGTTATCATGTGATTATATATACTAATCAGTAATCACAC
AtctaaattactaaaattaaggttttagGAGTGTTTTTTTGTACTCTGTA
CTAAAAGATAGCCGTTATGAACAATCTCGTTTCATAACGATTTTCCAGTG
CATAAAGACGATGAACCACCTAAAGAAGAATTACCAAAAGACGAAGAATC
TCTGAAAGACGATAAATCCTTGAAAGACAAACAATTACGAAAGAACGAAA
AGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGAC
GACAAATTACAGAAGGATGAAAAATTACCCAATGAAGAAGAATTTCGAAA
GGTCGAACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGATG
AAATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATTGA
AGCTCTGTTTAAAATAGCGATATTAGAgttaaaaagttacaaaattttga
aattctttcccTAATGATAGTCGGGAGTCAGAAGTTCCTTTAGCCTAATT
AAGAAACGTCTTTTACCAACATTCCTTTGGCTAGACattttttgtacttt
gtacTAATAGTTGGCCGTAATAAACAATCTTGTTTTATAATGATTTTCCA
GTACATAAAGACGATGAATCACCGAAAAAAGAATTACCAAAAGACAAAGA
ATCTCTGAAAGACGATAAATCCTCGGAAGACAAACAATTAAGAAAGAACG
AAAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAG
GACAACAAATTCCAGAACAACGAAAAACTACCcaatgaagaaaattttcg
CAATGTCAAACACAAGCAAGAACTGACAGAAAATAGTGATGCTGACAGTG
ATGAATTATTTGTACTGGACAAGGCTGATGTGTGGAGTAATAGTAAGTAT
CAAAACTCTGTTTAAATTAGCGATATTAGAgttaaaaagttacaaatttt
tgaaattctttctcTAGGTAGTCAGGGGTCAGTAGTTCCTTTAGCCTAAT
TAAGAAACGTCTTTTACCAACATTCCTATGACTAGACATTTTTAGTACTC
TGTTTTTCCAGAGACAAATAACTGTTATAAATACCGATTTTTGCCGTTTC
ACCAGGTTTCACACACATTATAGCTCCTCTCAGACTTATCCAGCATCCCC
TGTTTCACAAAGGAGGATTTTAAAAGAAACCTCCTCTCTAAAACTTCTAA
NCGTTATAAATACCGATTTTTGCCGTTTCACCAGGTTTCACACACATTAT
AGCTCCTCTCAGACTTATCCAGCATCCCCTGTTTTACAAAGGAGGATTTT
AAAAGAAACCTCCTCTCTAAAACTTCTAACAGCTATATAATAAATTATGT
TGTTGAGATATCTTTGTTAGTTGATTTTCCAACCTCttcttgtgtttttt
ttttaaccaaaccttttttttttggtcaCTTTGGTGTTTTTCGgagaaat
ttaatgaaaattttagcttcaaagAGAAAGTGACCTGTTATAAACCATTT
GAAAGctcccaaaaaataaaaacaagattaGAGAAATTACAGAAGGACGA
AAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAAGAAC
TGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGACAAG
TCTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCTGTTTAAAAAAGCGA
TATTAGAgttaaaaagttacaaatttttgaaattctttaatggTAGTTGG
GAGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTTTTTTACCAACATTC
CTATGACTAGCTGGCTGTATCATTTGAGGCGTGCGATAGTATgcgcacac
ctccacacacCTGAAATGTCTTAGGAGTGCGATTTATTGCAAGCCATAAA
ATTAGTTTTACAACTCAAAGTTGAGCATAGCACTCCTAATCGCAAGATGG
ATTCACTTGTTATCATGTGATTATATATACTAATCAGTAATCACACAtct
aaattactaaaattaaggttttagGAGTGTTTTTTTGTACTCTGTACTAA
AAGATAGCCGTTATGAACAATCTCGTTTCATAACGATTTTCCAGTGCATA
AAGACGATGAACCACCTAAAGAAGAATTACCAAAAGACGAAGAATCTCTG
AAAGACGATAAATCCTTGAAAGACAAACAATTACGAAAGAACGAAAAGCC
ACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACGACA
AATTACAGAAGGATGAAAAATTACCCAATGAAGAAGAATTTCGAAAGGTC
GAACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGATGAAAT
GTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATTGAAGCT
CTGTTTAAAATAGCGATATTAGAGTTAAAAAGTTACAAAATTTTGAAATT
CTTTCCCTAATGATAGTCGGGAGTCAGAAGTTCCTTTAGCCTAATTAAGA
AACGTCTTTTACCAACATTCCTATGGCTAGACATTTTTTGTACTTTGTAC
TAATAGTTGGCCGTAATAAACAATCTTGTTTTATAATGATTTTCAAGTAC
ATAAAGACGATGAATCACCGAAAAAAGAATTACCAAAAGACAAAGAATCT
CTGAAAGACGATAAATCCTCGGAAGACAAACAATTAAGAAAGAACGAAAA
GCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACA
ACAAATTCCAGAACAACGAAAAACTACCCAATGAAGAAAAATTTCGCAAT
GTCAAACACAAGCAAGAACTGACAGAAAATAGTGATGCTGACAGTGATGA
ATTGTTTGTACTGGACAAGGCTGATGTGTGGAGTAATAGTAAGTATCAAA
ACTCTGTTTAAATTAGCGATATTAGAGTTAAAAAGTTACAAATTTTTGAA
ATTCTTTCTCTAGGTAGTCGGGAGTCAGTAGTTCCTTTAGCCTAATTAAG
AAACGTCTTTTACCAACATTCCTATGACTAGACATTTTTAGTACTCTGTT
TTTCCAGAGACAAATGGCCGTCATAAATACCAATTTTTGCCGTTTCACCA
GGTTTCACACACATTATAGCTCCTGTCAGACTTATCCAGCATCCCCAGGA
GGTTTTTGAAGAGCATTTAAAGCAGGATTTTAAAAGAAACCTCCTCTCTA
AAACTTCTAACAGCTATATAATAAATTATGTTGTTGAGATATCTTTGTTA
GTTGATTTTCCAACCTCTTCTTATGTTTTTTTTAAAACCAAACCTTTTTC
TTTGGTCACTTTGGTGTTTTTCGGAGAAATTTAATGAAAATTTTAGCTTC
AAAGAGAAAGTGACCTGTTATAAACCATTCGAAAGCTCCCAAAAAATAAA
AACAAGATTAGAGATGTATTGGGAGTATAGGTGGTTTCTCTACCTAACTC
CGGATACTAAGCTTCAAAGAGAGCAAAAACCAGAGAAGACAGCTGTTCCT
GGCTAAAAATCACTCAGAAATCATCTATACATTACCTGTAATATATATCT
AATCTCACTGCGTTTGTTCCATTCGGCTCCAATGTCAGTCCATTTTTTCT
CGAATGGACCTCCTAAACAGTTACTTAGTAGTATGCGTATTATAACATCT
CTCTTTTCTAAAGCCAAAAtgttcattaaattttgattcttgcctgagac
cgtcatttTTCTCCCCGGAAAACACACCAAAGTGTGAACTTTGCATAACA
CAAATTGAACAGATCCCTCCACTAAGCTTTTTCTACGTTTCAGATGATAC
TGGAAATACTCGAAGATCCtcaagaaaacgaaaaaaaacgATCAGCTACA
AAGGGNTTCAGATGATACTGGAAATACTCGAAGATCCtcaagaaaacgaa
aaaaaacgATCAGCTACAAAGGGATGGAATTAGAACATGATGGCCTAGAA
ACGTTTGGTGATCCTGACTTTATCCGTAAGCTACTTTTATTGTGTTTAAC
ATTGAGGAAGTATTATTAAATCATAATCATGGAGATTTATGCTGTCGTAA
AAATGCATGCAAGATATAGAAcacatgaaaaatgaaacaggaaataaaat
ttaagaaaaattaatcGCTTGTTTTAAAACGTTTTGGCTATATCTGAAAA
GTGATTTTAATTCTCAGGTACCAAATAACCGGGGCTGGGCGGACAGGCGT
GTGTTTGCGGTGATGGACAAAATGTGTACTTtctcactttttcttttttt
gtaccATGGTACTAACTTGTAATTTATGTTCAAAATAGGGGGACCACCCC
TTTGTACCATGGTACTAGCttttaatttaaaatcaaaagtgGTGGACAAC
CCTTTTAGCATAGGACACTTTTTAGAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038160-exon-sc0001788-1491911889:35249..35771 | TCONS_00038160-exon-sc0001788-1491911889:35249..35771 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1510915933:35249..35771 | TCONS_00038160-exon-sc0001788-1510915933:35249..35771 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1575043694:35249..35771 | TCONS_00038160-exon-sc0001788-1575043694:35249..35771 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1491911889:36700..36990 | TCONS_00038160-exon-sc0001788-1491911889:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1510915933:36700..36990 | TCONS_00038160-exon-sc0001788-1510915933:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1575043694:36700..36990 | TCONS_00038160-exon-sc0001788-1575043694:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1491911889:39960..40478 | TCONS_00038160-exon-sc0001788-1491911889:39960..40478 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1510915933:39960..40478 | TCONS_00038160-exon-sc0001788-1510915933:39960..40478 | Clytia hemisphaerica | exon |
| TCONS_00038160-exon-sc0001788-1575043694:39960..40478 | TCONS_00038160-exon-sc0001788-1575043694:39960..40478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:35249..40478 + |
Blast
The following BLAST results are available for this feature:
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