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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038157 ID=TCONS_00038157|Name=TCONS_00038157|organism=Clytia hemisphaerica|type=transcript|length=1169bp
atgtacTGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGC
GAAAAATTACATAATGATGATAAATCACAGAAGaaagaattatcaaaaga
aGGAAACTCACAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAA
AACGCGGAGAGTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCA
CCGAAAAACGAAGGATccttgaaagaagaaaaattacaacaTGACGAGGA
GTCGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATA
AATCCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAG
AAGGATTTACAGAAGACCGATGGATCACCAAAGGATGACAAATTACAGAA
GGACGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGC
AAGAACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTG
GACAAGTCTGACGTGTGGAGTAATATGCATAAAGACGATGAACCACCTAA
AGAAGAATTACCAAAAGACGAAGAATCTCTGAAAGACGATAAATCCTTGA
AAGACAAACAATTACGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTA
CAGAAGACCGATGGATCACCAAAGGACGACAAATTACAGAAGGATGAAAA
ATTACCCAATGAAGAAGAATTTCGAAAGGTCGAACACAAGCAAGAACTGA
TAGAAAATAGTGATGCTGACAGTGATGAAATGTTTGTTCTGGACAAGTCT
GACGTGTGGAGTAATATACATAAAGACGATGAATCACCGAAAAAAGAATT
ACCAAAAGACAAAGAATCTCTGAAAGACGATAAATCCTCGGAAGACAAAC
AATTAAGAAAGAACGAAAAGCCACTCGAACAGAAAGATTTACAGAAGACC
GATGGATCACCAAAGGACAACAAATTCCAGAACAACGAAAAACTACCcaa
tgaagaaaattttcgCAATGTCAAACACAAGCAAGAACTGACAGAAAATA
GTGATGCTGACAGTGATGAATTATTTGTACTGGACAAGGCTGATGTGTGG
AGTAATAATGATACTGGAAATACTCGAAGATCCtcaagaaaacgaaaaaa
aacgATCAGCTACAAAGGG Run BLAST on NCBI transcript from alignment at sc0001788:35247..39953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038157 ID=TCONS_00038157|Name=TCONS_00038157|organism=Clytia hemisphaerica|type=transcript|length=4707bp|location=Sequence derived from alignment at sc0001788:35247..39953+ (Clytia hemisphaerica)
atgtacTGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAGC
GAAAAATTACATAATGATGATAAATCACAGAAGaaagaattatcaaaaga
aGGAAACTCACAAAGAGACGAAAAATTACTAAATGCCAAGGAATCACCAA
AACGCGGAGAGTCtcgaaaagacaaaaaattgcaaCATAGCCAGGAATCA
CCGAAAAACGAAGGATccttgaaagaagaaaaattacaacaTGACGAGGA
GTCGCCGAAAGAAGAATTACCAAAAGACGAAGAATCCCTGAAAGACGATA
AATCCTTGAAAGACAAACAATTAAGAACAAACAAAAAGCCACTTGAACAG
AAGGATTTACAGAAGACCGATGGATCACCAAAGGATGACAAATTACAGAA
GGACGAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGC
AAGAACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTG
GACAAGTCTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCTGTTTAAAA
AAGCGATATTAGAgttaaaaagttacaaatttttgaaattctttaatggT
AGTTGGGAGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTTTTTTACCA
ACATTCCTATGACTAGCTGGCTGTATCATTTGAGGCGTGCGATAGTATgc
gcacacctccacacacCTGAAATGTCTTAGGAGTGCGATTTATTGCAAGC
CATAAAATTAGTTTTACAACTCAAAGTTGAGCATAGCACTCCTAATCGCA
AGATGGATTCACTTGTTATCATGTGATTATATATACTAATCAGTAATCAC
ACAtctaaattactaaaattaaggttttagGAGTGTTTTTTTGTACTCTG
TACTAAAAGATAGCCGTTATGAACAATCTCGTTTCATAACGATTTTCCAG
TGCATAAAGACGATGAACCACCTAAAGAAGAATTACCAAAAGACGAAGAA
TCTCTGAAAGACGATAAATCCTTGAAAGACAAACAATTACGAAAGAACGA
AAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGG
ACGACAAATTACAGAAGGATGAAAAATTACCCAATGAAGAAGAATTTCGA
AAGGTCGAACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGA
TGAAATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATT
GAAGCTCTGTTTAAAATAGCGATATTAGAgttaaaaagttacaaaatttt
gaaattctttcccTAATGATAGTCGGGAGTCAGAAGTTCCTTTAGCCTAA
TTAAGAAACGTCTTTTACCAACATTCCTTTGGCTAGACattttttgtact
ttgtacTAATAGTTGGCCGTAATAAACAATCTTGTTTTATAATGATTTTC
CAGTACATAAAGACGATGAATCACCGAAAAAAGAATTACCAAAAGACAAA
GAATCTCTGAAAGACGATAAATCCTCGGAAGACAAACAATTAAGAAAGAA
CGAAAAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAA
AGGACAACAAATTCCAGAACAACGAAAAACTACCcaatgaagaaaatttt
cgCAATGTCAAACACAAGCAAGAACTGACAGAAAATAGTGATGCTGACAG
TGATGAATTATTTGTACTGGACAAGGCTGATGTGTGGAGTAATAGTAAGT
ATCAAAACTCTGTTTAAATTAGCGATATTAGAgttaaaaagttacaaatt
tttgaaattctttctcTAGGTAGTCAGGGGTCAGTAGTTCCTTTAGCCTA
ATTAAGAAACGTCTTTTACCAACATTCCTATGACTAGACATTTTTAGTAC
TCTGTTTTTCCAGAGACAAATAACTGTTATAAATACCGATTTTTGCCGTT
TCACCAGGTTTCACACACATTATAGCTCCTCTCAGACTTATCCAGCATCC
CCTGTTTCACAAAGGAGGATTTTAAAAGAAACCTCCTCTCTAAAACTTCT
AANCGTTATAAATACCGATTTTTGCCGTTTCACCAGGTTTCACACACATT
ATAGCTCCTCTCAGACTTATCCAGCATCCCCTGTTTTACAAAGGAGGATT
TTAAAAGAAACCTCCTCTCTAAAACTTCTAACAGCTATATAATAAATTAT
GTTGTTGAGATATCTTTGTTAGTTGATTTTCCAACCTCttcttgtgtttt
ttttttaaccaaaccttttttttttggtcaCTTTGGTGTTTTTCGgagaa
atttaatgaaaattttagcttcaaagAGAAAGTGACCTGTTATAAACCAT
TTGAAAGctcccaaaaaataaaaacaagattaGAGAAATTACAGAAGGAC
GAAAAACTACCcaatgaagaaaaatttcaaaaggtcGAACACAAGCAAGA
ACTGGTAGAAGATAGTGATGATGACAGGGATGAAATGTTTGTACTGGACA
AGTCTGACGTGTGGAGTAATAGTAAGTATCAAAGCTCTGTTTAAAAAAGC
GATATTAGAgttaaaaagttacaaatttttgaaattctttaatggTAGTT
GGGAGTCAGTAGTATCTTTAGCGTAATTAAGAAACGTTTTTTACCAACAT
TCCTATGACTAGCTGGCTGTATCATTTGAGGCGTGCGATAGTATgcgcac
acctccacacacCTGAAATGTCTTAGGAGTGCGATTTATTGCAAGCCATA
AAATTAGTTTTACAACTCAAAGTTGAGCATAGCACTCCTAATCGCAAGAT
GGATTCACTTGTTATCATGTGATTATATATACTAATCAGTAATCACACAt
ctaaattactaaaattaaggttttagGAGTGTTTTTTTGTACTCTGTACT
AAAAGATAGCCGTTATGAACAATCTCGTTTCATAACGATTTTCCAGTGCA
TAAAGACGATGAACCACCTAAAGAAGAATTACCAAAAGACGAAGAATCTC
TGAAAGACGATAAATCCTTGAAAGACAAACAATTACGAAAGAACGAAAAG
CCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGACGA
CAAATTACAGAAGGATGAAAAATTACCCAATGAAGAAGAATTTCGAAAGG
TCGAACACAAGCAAGAACTGATAGAAAATAGTGATGCTGACAGTGATGAA
ATGTTTGTTCTGGACAAGTCTGACGTGTGGAGTAATAGTAAGTATTGAAG
CTCTGTTTAAAATAGCGATATTAGAGTTAAAAAGTTACAAAATTTTGAAA
TTCTTTCCCTAATGATAGTCGGGAGTCAGAAGTTCCTTTAGCCTAATTAA
GAAACGTCTTTTACCAACATTCCTATGGCTAGACATTTTTTGTACTTTGT
ACTAATAGTTGGCCGTAATAAACAATCTTGTTTTATAATGATTTTCAAGT
ACATAAAGACGATGAATCACCGAAAAAAGAATTACCAAAAGACAAAGAAT
CTCTGAAAGACGATAAATCCTCGGAAGACAAACAATTAAGAAAGAACGAA
AAGCCACTCGAACAGAAAGATTTACAGAAGACCGATGGATCACCAAAGGA
CAACAAATTCCAGAACAACGAAAAACTACCCAATGAAGAAAAATTTCGCA
ATGTCAAACACAAGCAAGAACTGACAGAAAATAGTGATGCTGACAGTGAT
GAATTGTTTGTACTGGACAAGGCTGATGTGTGGAGTAATAGTAAGTATCA
AAACTCTGTTTAAATTAGCGATATTAGAGTTAAAAAGTTACAAATTTTTG
AAATTCTTTCTCTAGGTAGTCGGGAGTCAGTAGTTCCTTTAGCCTAATTA
AGAAACGTCTTTTACCAACATTCCTATGACTAGACATTTTTAGTACTCTG
TTTTTCCAGAGACAAATGGCCGTCATAAATACCAATTTTTGCCGTTTCAC
CAGGTTTCACACACATTATAGCTCCTGTCAGACTTATCCAGCATCCCCAG
GAGGTTTTTGAAGAGCATTTAAAGCAGGATTTTAAAAGAAACCTCCTCTC
TAAAACTTCTAACAGCTATATAATAAATTATGTTGTTGAGATATCTTTGT
TAGTTGATTTTCCAACCTCTTCTTATGTTTTTTTTAAAACCAAACCTTTT
TCTTTGGTCACTTTGGTGTTTTTCGGAGAAATTTAATGAAAATTTTAGCT
TCAAAGAGAAAGTGACCTGTTATAAACCATTCGAAAGCTCCCAAAAAATA
AAAACAAGATTAGAGATGTATTGGGAGTATAGGTGGTTTCTCTACCTAAC
TCCGGATACTAAGCTTCAAAGAGAGCAAAAACCAGAGAAGACAGCTGTTC
CTGGCTAAAAATCACTCAGAAATCATCTATACATTACCTGTAATATATAT
CTAATCTCACTGCGTTTGTTCCATTCGGCTCCAATGTCAGTCCATTTTTT
CTCGAATGGACCTCCTAAACAGTTACTTAGTAGTATGCGTATTATAACAT
CTCTCTTTTCTAAAGCCAAAAtgttcattaaattttgattcttgcctgag
accgtcatttTTCTCCCCGGAAAACACACCAAAGTGTGAACTTTGCATAA
CACAAATTGAACAGATCCCTCCACTAAGCTTTTTCTACGTTTCAGATGAT
ACTGGAAATACTCGAAGATCCtcaagaaaacgaaaaaaaacgATCAGCTA
CAAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038157-exon-sc0001788-1491911889:35247..35771 | TCONS_00038157-exon-sc0001788-1491911889:35247..35771 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1510915933:35247..35771 | TCONS_00038157-exon-sc0001788-1510915933:35247..35771 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1575043694:35247..35771 | TCONS_00038157-exon-sc0001788-1575043694:35247..35771 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1491911889:36197..36487 | TCONS_00038157-exon-sc0001788-1491911889:36197..36487 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1510915933:36197..36487 | TCONS_00038157-exon-sc0001788-1510915933:36197..36487 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1575043694:36197..36487 | TCONS_00038157-exon-sc0001788-1575043694:36197..36487 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1491911889:36700..36990 | TCONS_00038157-exon-sc0001788-1491911889:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1510915933:36700..36990 | TCONS_00038157-exon-sc0001788-1510915933:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1575043694:36700..36990 | TCONS_00038157-exon-sc0001788-1575043694:36700..36990 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1491911889:39892..39953 | TCONS_00038157-exon-sc0001788-1491911889:39892..39953 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1510915933:39892..39953 | TCONS_00038157-exon-sc0001788-1510915933:39892..39953 | Clytia hemisphaerica | exon |
| TCONS_00038157-exon-sc0001788-1575043694:39892..39953 | TCONS_00038157-exon-sc0001788-1575043694:39892..39953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:35247..39953 + |
Blast
The following BLAST results are available for this feature:
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