TCONS_00038139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038139
Unique NameTCONS_00038139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038139 ID=TCONS_00038139|Name=TCONS_00038139|organism=Clytia hemisphaerica|type=transcript|length=455bp
GAACTTGTACAAACCCAACGCCTGAGCATGGTGGAAACCCTTGCAGTGGC
GATGGCACTGAATCACAGAATTGTAACACGTTCCCATGTCCAAtcCACGG
AGAATGGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTG
TTGGATTCCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCAT
GGTGGAGATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCAA
TACCAACTACTGTCCAGAAATGTGCGATGAATTTTTCAAGATGTGTGACT
GTATTAACGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCT
TCATTTTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAAT
TTCCACCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAAATGCTGAAT
GCAGT
Run BLAST on NCBI

protein sequence of TCONS_00038139-protein

>TCONS_00038139-protein ID=TCONS_00038139-protein|Name=TCONS_00038139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
TCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGV
GFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNTNYCPEMCDEFFKMCDC
INVPVIYDMSILTTNSSFYGINDTAVNSSLDAISTWDAEAVKLACKNAEC
S
Run BLAST on NCBI

transcript from alignment at sc0001782:12958..20331-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038139 ID=TCONS_00038139|Name=TCONS_00038139|organism=Clytia hemisphaerica|type=transcript|length=7374bp|location=Sequence derived from alignment at sc0001782:12958..20331- (Clytia hemisphaerica)
GAACTTGTACAAACCCAACGCCTGAGCATGGTGGAAACCCTTGCAGTGGC
GATGGCACTGAATCACAGAATTGTAACACGTTCCCATGTCCAAGTATGTT
CACAAAATTTGATCCCAATTACGGGAACATTTTTACTATCAATAAAACCA
AAGAAGACTTTAACTCATAGAATATGAAAAGTCAAATATTTTCCTCAGTT
GAAAAAGCAAATAATTCGAATTTGGACCCTTTTGTTTTATTGTATAGTCA
CCTTAATCCCTTGCCCAGGTACAAATATTTTTCATGTTCTTATGGTTATG
GTGTTCTAAGTTTATACCTTGACCTTTTAGCATGCTTTGAATATTTTGAA
TTTGCTTGGAGATCTCAGGAATGCTTCATCTTTATAAAAACATGAGGGTA
CTTTTTGTAAAACACGGGCGTGATTCTTTTGAAAAATGACTTCTACAGTC
GTTTATATTCAGTATGAATATGCAGAATTTAGGTGTGGTACTCAAAACTT
TAACAAATGATACAAACAAATGATTCACTGTTGTTTTCTGCATAATTGTA
GTTGAGTCCCGACACGGGATTGTAATTCAATCCCGACGAAATTTTTAAGA
ATTTTCGTTAAGAAAGAACAAAAATGGCGGGACTGAACTGCAAGTATATA
TAATAGTATTTGGCGAGACTGAACTACAGGTATATATATAGTACTTGGCG
GGACTAAACTGCAAGTATATATATATGGTGAAGATCAGAGATCTGACCTC
AAGGAGTATTTGGCGGGGCTGAACTGCAAGTATCTATATAGTAATTGAAC
AATAATTTTCTTTTTATTAGTTTAATTCCTTTAAAAGAAGGATTGGCGGC
TTGAACTTTGAAACCAGGGGAGAACGGGGCTAATTATAAATAATACGCAC
TAATTATAAGACTTTTAAGTATTTGTCGGGGCTGAAATTCAGTCCCGCCA
TTAAAATATCGGGACTGGAATGCAGTCCCGCCAACTATTTGGCGGGACTA
AACTGCAAGTATATATATAGTAATTGGCGGACTGAACTGCAAGTATATAC
ATAGTAATTGGCGGGACTGAACTGCAAGTATATATATAGTAACTGAGCAA
TAACTTTCCTTCTGTTAGTTTATTTAAAAAGTCCATACCAAAGATACACT
ATTATAATTTAAAGCTCATTACCAATTATTGTTCGTTCTTTAAAAGCCTT
ATAGAAAGGGGTTATTCTAAAGAACGGAAGATACACTATTGTATCTTATA
GTCCATATCCAAGTATTGCCCGTGCTTTAAAAGCATTATAGAAAGGAGTT
ATTCTAAAGGACAGAAGATACACTATTATATCTTATATTCCATACCAAAT
TATTGCCCGTTCTTTAAAAGTATTATACAAAGAGGTTACTCTAAAGAACG
GTAGATAGACTATTATATCTTATAGTCCATACCCAAGTATTGTTCATTCT
TTAAAAGCATTATAGAAAGGAGTTATTGTAAAGAACGGAAGATACACTAT
TATATCTTATAGTCCATATCCAAGTATTGCCCGTTTTTTAAAAGCATTAT
ACAAAGGGGTTATTCTAAAGAACGGAAAATACACTATTATATCTTATAGT
CCATACCCAAGTATTGTCCGTTCTTTAAAAGCATTATACAAAGTGGTTAT
TCTAAAGAACGGAAGATACACTATTATATCTTATAGTCCATACCCAAGTA
TTGTTCGTTCTTTAAAAGCATTATAGAAAGGAGTTATTCTAAAGAACGGA
AGATACACTATTATATCTTATAGTCCATATCCAAGTATTGCCCGTTTTTT
AAAAGCATTATACAAATGGTTTATTCTAAAGAACGGAAGAAAAACTATTA
TATCTTATAGTCCATACCCAAATATTGTCCGTTCTTTAAAAGCATTATAG
AAAGGAGTTATTCTAAAGGACATAAGATACCCTATCATATCTTATATTCC
ATACCAAATTATTGCCCGTTCTTTAAAAGTATTATACAAAGAGGTTACTC
TAAAGAACGGAAGATACACTAACATATTTTATAGTCCATACCCAAAGTAT
TGCCCTTTCTTTAAAAACACTATACAAAGTGGTTATTCTAAAGTAATAGT
AGCCATCAATTAAGTGAGTTTTCATTTTATTTCTTTACAATTTTTTCACA
AATAAGATCATCAATTTATTAGATCTGAAAAAATCATTCCCCCCGGGGAA
CTCAAGTGCAATTATGCCTTGTTTTCTATCGTCAGATAAGTAACTCTATT
TGACATGCCTCCTTTTCATATCTTCAATCAGCAATTACGACTTCCTATTA
TTTCCCTAAAGAAGGTTGTCGGAAAATATAGTGATGATCATGGCATCTAT
TTCTTTTTGTCATAGTTCATGGTGGCTGGACAGAATGGACGAACTGGGCT
ACATGTTCTTTGACCTGCGGAACAGGATCACAAAATCGAACAAGAACTTG
TACAAACCCAACGCCTGAGCATGGTGGAAACCCTTGCAGTGGTGATGGCA
CTGAATCACAGGACTGTAACACTAATCCTTGCCCAGGTACGGTACATACT
TTTTTGAGGCGTACCAAAAATATTATATACTTCTTTCAGTGCGAATTAAG
TGACAGACATTATGAAAATAGTTTTTTATAGGAAATAACACTTCAACTTT
TTGCAAATCTAACTTTTAAGAAGGATAGATTGTGTAAACAAGCCATCAAA
AATTCAATTTGACAACATTTAGTTCTGATGATTCAAAAGACTCTGCTATG
CTATATCTATGTTATTTTACCAAATTTGCACAACTTTTTTATAATCGTTT
CCTTTCGNATGCCCCCTTTTCATATCTTCAATCAGCGATTACGACTTCCT
ATTATTTCCCTAAAAGAAGGGTGTCGGAAAATATTTCGTAACTTTGTGAA
AGGATTTATCTCACAAAATGTTATTTTACCAAATTTACACATTTTCTGTA
TACTCGTTTCCTTTCTGTTTTTCTTCTTCAGTCCACGGAGAATGGGGACA
ATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTGTTGGATTCCAAA
ACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCATGGTGGAGATGAT
TGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCAATACCAACTACTG
TCCAGGTACAAAATTCGAAAAGCCTAGGGATGGTAACTTTGCCTTGCCAA
CCGACAGGGTTTCCGCTAAGCTACGAAAAATAGAGCAACGTGGGACTCGT
TTTTTGAAACTCTTCCACATCTTTCCCGATTCCGCGAAAAAGGTACTCTA
CTAGGGACTGATTTTTCTATTCTGGTGTCTTTTCGACCCTACCAGGAACT
CATCTCGCTCATTGAGGTAAAAAAAGATACTGTGACGAGAGGCATTTCCC
GGGCAAAACGCATGAAAACTTATGAATTAGTAAAAGATGCTTTTGCATTG
TAAATTAACAGAGCTACTACTTAGATTACTGTAATATCGTACTACTATTT
CGTATATCATGGTCTTATCTACATGGGAGGTATCACTTCATACATCGAAA
GAAGCATGGAGTCTAGATCACTAGACTGGCTGTGTCATAATTAATTTTTA
AACCAAAAAAAGAAAGATATTAATAAAAAATAAAAAAATGATGATGTCAG
CAAAACTTGTTTTTTTTTACCAACTCCGGTTTGGCTGATGGTATAAACAT
AAAATTCGGACCAAAGTTGCATATCACTAAAAGGATCATTTTGAATAAAA
TATTTTTCAAATCTTGCTGGCGTCCACAGATCTGTAAAGCCCGAAGGGCT
AGATTTGCGGCCTTTATCGAAAAGTGAAGCCAAGGTTTGGAAGGATTTCC
TACCAAAGTCACGTGACTAAAATATGCAATTTCACCGGTTTGAGAGATGT
GAAATAGTGTTTTCCGTCTACTTTTTTTTTATCTCTCGCTCCAAAAACAA
TTAAAATGCTAGATCCTATCCGCGGGCACGAAATTTAAAAAGTCAAATTT
TTGCTTCACTTTTTTTTGCTGGAGAAAGCTCTTGCCTATCTAGCCCTTCG
GGCTTTACAGATATCTGTGCTGGTGTCATCAGAAATCAGCAAAATACGAA
ATTAAGTGCTGACGTCAGCAAAAGTTCAAAGTATCTATTTTTTCATAATG
ATCCGTTCAATGGAATATTCTTTTAATAAAGGAAGCAATTTCTATCAAAA
GGCATTCTCCTATTTTGAATAGTGGCCTTAAAGTCTCTAGAGATTTGTAT
CTATTTTCTTAGTTTTACAGCATTTTAATTAGTCATTTAATTGTTTTAGA
TTTTGAAATCGTTTTTAATAGGTAGTCTATACTGAGAAATGGAAAAAGTC
ATTTTTTTATTTTTTTTGTAATAACTTTTGAAATATTTAAGATATCTCAA
TGAAACTTACTACAATGGTAGTACAACTATTAACAATGCAAAATATGAAA
AAAAATTCTAAAATTAGCACAGACGGGGGTGATACCAACCAGGAGGTTAC
GTACTATAACTTTCTCAATACAGGTTTTTAAAGACTTCTAAAACGTTTTA
GCAAAAGATTTTTGGTATGGTGGTTGGTATTCATCAAAGGCAGAGGATGT
GTGAAAAAAAACCTAAATTTTATTCCAGGGGGTCTGAAACCTAAAAAACG
TAATTTTTGAAGATTTAAAACCAATAGCAGATTTTTTTGAATTTTTTCTT
CACTCATCCTCTGCCAAATGGTACAAGAAACAACCCCTGAAAATTTCATG
GAGCTAGCACTTGTCAGTCCCGAGAAAAACCCGCATAGGCGTTAGCAAAC
CCCCGGAATCGCATTTTGAGAAAATCAAAGAAAAGACAAAAATGGGTATT
ATTTTAAGCTGGAAAGCTCTTTTCAAAAAATTTCTTCACTGAATACCCGC
ATCCAATCAGTCAGGTTTCAAAAGTTAAAGTAAAACATTTCACAAAAATT
GATAAAATATCCAAAAATCAACAAAAACATGTTGCGCTAAAGTCATGTAT
ACATAGCAAAGTTTGCGGTAATCTTGCGATAACATCAACTTTGGGTGAAA
ACAGCCACATAAGTGTGTCAAAATGTTCATTGAAAGTCCAGCATGACTCT
CTTTAGGCATAAAAACTTTTTGTGTGCATATTTCTATTCACATAGACTTG
ATGACAATGAGCTGGCTTGACCGAAGGAAGGCTGTTATGAGTGGCGGGTG
TCAGATGAGAATGTGCGTCTCCAGAAGTTAGGTCCAGTTCATTATAATGC
ACAGTTACATCATGTTGTGCTCGGAAATATCTCAGTTAAATTTAAATCCA
CTACAAAACATTATGTGAGCCACCAAAAGCACACTGCCTATGCTCAAAAC
AAAATGGCGGCAACTTAAATGTTTTTCGTAGAAAAGAGCTTTCTTTTTTG
GTGTATCACATTGCTATGTTCCGGCCGAGATTGAAGAAATAAGTCCTTAG
CAACGGGATTTTTTCCGTTGCTAGGGCAATTTTTCAAGCACCCAGCAGGA
CAAAAATTCTCACTGCGGCCTGAAAAATAAAGATATCTCTCTGAATTTTC
CAGGAGATGTTCAGAAAGACCTCAAAACACCCAAAAACCAAAATTTGACA
ATTTTTTCGATGATTTTCCATTTCTCAGTAGACTACCAACTTAAGCTCAA
CTTTGTTTTACAGAAATCATTTGCCTTAATGATGTATATGATACTATACG
AAATATAGCTGTTTTTAAATCAAAATTTTCATCTTTTGCTTAGAATATCT
TGGCTTGATCAATTTTCTCGGACTTGCTTTTATCCTTTATTGATCCGTTC
AATGTTGTACAACTTTTAGTTTTTTGTTATTGAAAAAACTAATCATGGTC
TACACTCCAATACGTATGCTTTTTTCAAAGTATGAAAAGTGATATGATTA
GACAAGTGGAAACGGTGATAAAACTACGGTAAATTTGGACGTGTCTTAAT
TTGCTTGAGTCAGAATTGAATTTTCTTTCTCACATTTGTTTATAGTGTTA
CTACTTTTGTTACACTACCCTTCCTATTGTCGGTGATAAAAATGGTAAGA
TATCTACCAAAAGGTAAATTGGGACACGCTTTAAATTGCCAGAGGATCTT
CTATTGTGGGATAAATTGTTCTACCGAGTCCTGCTTTGGTCCAATCATTT
TCAACCGAACATTTCTCGGCCAAAAGTATGTGTGTATGACCTTGATTAAA
AATTTCAAAAGTTTTAGTTTCTTTCACGTTAAATCTGGTGAAAATTGCAA
AGTTTCCGTTTGAAAATGTTAACCCATATGTGGCATTTTTTATTTTCTTT
CCAGAAATGTGCGATGAATTTTTCAAGATGTGTGACTGTATTAACGTGCC
AGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATTTTATGGAA
TCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCACCTGGGAT
GCAGAAGCTGTCAAACTTGCATGTAAAAGTAAGTTAATTGTCCTTTTCAA
CATAGTAAGATGGTTAAGACCACGTTCACACGCGACGAACACACCTTATG
TTGCACTCCGAAACAAAATGAAGCCATTTTATTGGACAAAACAAGTTCTA
CGTCGCTTCTAACCAATAGAATGGCTTCGTTTCGTTTCGGAGCGAAACGG
GACCATTACGTGCGACCATGGTCTTTAACATTGAAAACGACTCTTCTCTC
AAAATGCATGAAAAATCCAACTTTAGCCTTCTGACATCCTCTTCTGGTGT
ACTCCTGTACATTGAGTTTAAAGCCCGAAGGGCTAGAGTAGAGTCTCTAA
CCTTTCTCAGGAAAGATAAAGTGAAGCCTTAAAAAATGCGCGTATTTTTT
AGGACAGATTGAATCTAGCAATTCCTTTGTTTAAGATTGATATTTTTTTC
GAAATTTAGCGGTAAATTTTACTTTCAGGCGAGCCAGCCGAGCCCCTCAA
GGCCGCACAACTTTGGTAGGATTTGTTGGCTTCAAATCCTACCAAAGAGA
TTGACTTCTAGCCTTCGGCTACTATTTCATTGCTCCTGTATTTGTAGAGG
CCTGGGATTCAGTATCTTGTGTTTTCAAAGTATCGTTACCAAATTACTGA
AGTCTAGACATAATTAAGTTTTTTTTATAAGAACAAGTTAATAAGAACAC
TTTAAGACTTTACGGACAATAAACACCCAATTTCTTAGAAATGAAATAAA
GAACATTTTAAGAACATTTTTAGGCATAAAACTCAAAATATTCAGAACAT
ATATGAAGCTTTAAGAATTTTGGATGTTTTCATAAATGCGTGGATAAAAA
ACAAAGGAATGAAAAAATAGCTATTGATCGTCTCTGTTTTTTTCTAATAA
ACATTTCTAGATGCTGAATGCAGT

Coding sequence (CDS) from alignment at sc0001782:12958..20331-

>TCONS_00038139 ID=TCONS_00038139|Name=TCONS_00038139|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0001782:12958..20331- (Clytia hemisphaerica)
ATGCTGAATGCAGTAAATGTGCGATGAATTTTTCAAGATGTGTGACTGTA
TTAACGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCA
TTTTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTC
CACCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAATCCACGGAGAAT
GGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTGTTGGA
TTCCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCATGGTGG
AGATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCAATACCA
ACTACTGTCCAGACTTGTACAAACCCAACGCCTGAGCATGGTGGAAACCC
TTGCAGTGGCGATGGCACTGAATCACAGAATTGTAACACGTTCCCATGTC
CAAATGCTGAATGCAGTAAATGTGCGATGAATTTTTCAAGATGTGTGACT
GTATTAACGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCT
TCATTTTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAAT
TTCCACCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAATCCACGGAG
AATGGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTGTT
GGATTCCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCATGG
TGGAGATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCAATA
CCAACTACTGTCCAGACTTGTACAAACCCAACGCCTGAGCATGGTGGAAA
CCCTTGCAGTGGCGATGGCACTGAATCACAGAATTGTAACACGTTCCCAT
GTCCAAATGCTGAATGCAGTAAATGTGCGATGAATTTTTCAAGATGTGTG
ACTGTATTAACGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAAC
TCTTCATTTTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGC
AATTTCCACCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAATCCACG
GAGAATGGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGT
GTTGGATTCCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCA
TGGTGGAGATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCA
ATACCAACTACTGTCCAGACTTGTACAAACCCAACGCCTGAGCATGGTGG
AAACCCTTGCAGTGGCGATGGCACTGAATCACAGAATTGTAACACGTTCC
CATGTCCAAATGCTGAATGCAGTAAATGTGCGATGAATTTTTCAAGATGT
GTGACTGTATTAACGTGCCAGTGATTTATGATATGAGCATCCTCACAACA
AACTCTTCATTTTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGA
TGCAATTTCCACCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAATCC
ACGGAGAATGGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGC
GGTGTTGGATTCCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGC
CCATGGTGGAGATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCT
GCAATACCAACTACTGTCCAGACTTGTACAAACCCAACGCCTGAGCATGG
TGGAAACCCTTGCAGTGGCGATGGCACTGAATCACAGAATTGTAACACGT
TCCCATGTCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022789XLOC_022789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038139-exon-sc0001782-1575043694:20239..20331TCONS_00038139-exon-sc0001782-1575043694:20239..20331Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1575043694:17177..17350TCONS_00038139-exon-sc0001782-1575043694:17177..17350Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1575043694:13854..14027TCONS_00038139-exon-sc0001782-1575043694:13854..14027Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1575043694:12958..12971TCONS_00038139-exon-sc0001782-1575043694:12958..12971Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1510915933:20239..20331TCONS_00038139-exon-sc0001782-1510915933:20239..20331Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1510915933:17177..17350TCONS_00038139-exon-sc0001782-1510915933:17177..17350Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1510915933:13854..14027TCONS_00038139-exon-sc0001782-1510915933:13854..14027Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1510915933:12958..12971TCONS_00038139-exon-sc0001782-1510915933:12958..12971Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1491911889:20239..20331TCONS_00038139-exon-sc0001782-1491911889:20239..20331Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1491911889:17177..17350TCONS_00038139-exon-sc0001782-1491911889:17177..17350Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1491911889:13854..14027TCONS_00038139-exon-sc0001782-1491911889:13854..14027Clytia hemisphaericaexon
TCONS_00038139-exon-sc0001782-1491911889:12958..12971TCONS_00038139-exon-sc0001782-1491911889:12958..12971Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038139-proteinTCONS_00038139-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001782supercontigsc0001782:12958..20331 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14209	2.05205	0	1.17606	0	0	0	0	0	0	0	0	1.1897	0	0	0	0	0	0	3.27449	1.21399	0	0	0.895834	0	0	0.853457	0.533243	0.445402	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00038139 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 3.325e-24
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 3 
Query:    3 TCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNTNYCPEMCDEFFKMCDC 302
             C NP P++GG PC G   E Q CN  PCP+ G W  WS WT+C   CG G   R+R C +PAPA+GGD C+G L ++  +CNT  CPE   E+    +C
Sbjct:  810 VCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLG-LHTEEALCNTQPCPESWSEWSDWSEC 908
The following BLAST results are available for this feature:
BLAST of TCONS_00038139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A3.325e-2447.00Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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