TCONS_00038139-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00038139-protein
Unique NameTCONS_00038139-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00038139-protein ID=TCONS_00038139-protein|Name=TCONS_00038139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
TCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGV
GFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNTNYCPEMCDEFFKMCDC
INVPVIYDMSILTTNSSFYGINDTAVNSSLDAISTWDAEAVKLACKNAEC
S
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_022789XLOC_022789Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00038139TCONS_00038139Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 35..88
e-value: 2.2E-13
score: 60.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 1..29
e-value: 5.7E-4
score: 19.6
coord: 31..87
e-value: 1.2E-16
score: 60.3
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 36..87
e-value: 1.0E-10
score: 41.5
coord: 2..29
e-value: 0.16
score: 12.1
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 32..88
score: 12.873
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 28..87

Blast
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BLAST of TCONS_00038139-protein vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.110e-25
Identity = 47/100 (47.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:    1 TCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNTNYCPEMCDEFFKMCDC 100
             C NP P++GG PC G   E Q CN  PCP+ G W  WS WT+C   CG G   R+R C +PAPA+GGD C+G L ++  +CNT  CPE   E+    +C
Sbjct:  810 VCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLG-LHTEEALCNTQPCPESWSEWSDWSEC 908
The following BLAST results are available for this feature:
BLAST of TCONS_00038139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A4.110e-2547.00Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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