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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038016 ID=TCONS_00038016|Name=TCONS_00038016|organism=Clytia hemisphaerica|type=transcript|length=1737bp
NATATTGAGATTACCAGCAACGAAACAGCAATTAACGAGACAGCAAACAA
CGAGATTGAGATTACCAGCAACGAAACAGCAATTAACGAGACAGCAAACA
ACGATATTGAGATTACCAGCAACGAAACAGCAATTAACGAGACAGCAAAC
AACGAGATTGAGATTACCAGCAACGAAACAGCAATTAACGGGACAGCAAA
CAGCGGGATTGAGATTACCAGCAACGAAACAGCAATTAACGAGACAACAA
ACAACGAGATTGAGATTACCAGCAACGAAACAACAATTAACGAGACAGCA
AACAACGAGATTAAGATTATCAGCAACGAAACAGCAATTAACGAGACAGC
AAACAACGAGATAGAGATTACCAGCAACGAAACAGCAATTAACGAGACAG
CAAACAACGAGATTGAGATTATCAGCAACGAAACAGCAATTAACGAGACA
GCAAACAACGAGATAGAGATTACCAGCAACGAAACAGCAATTAACGGGAC
AGTAAACAGCGGGATTGAGATTACCAACAACGAAACACCAATTAACGAGA
CAGCAAACAACGAGATTGAAAGCGAAACCGATAAGAAACGAAAAAAACAA
CCGGAAAATAACAAGAAGAATTATCCtaagaggaagaagaagaagaatca
gGCGGGTTTGGAGAAAGTAGACGAAGACGTAGAATTAGTTATAGCAGCTC
CTGTATGTGACCGTAAGTCCCTTGCTGGCAAGTGTGTAGGTCTCTACACG
GAAAACCCATATGAATATTGGGTTTTTGGTGTGGAGAAGGTCTCTACAAA
GTGTGTTCATGGTAAATTTTTCGAATGCTTCGATAGAGAAAATAGGCTTT
ATCGACATTATAGTGACGGCCAACACCAGTTCTATGCGAGTATCGTTAGA
AGAGGAGTAGAGCAAAACgacttcttttttttccaaCTGGAGAAGTCTAA
AGAGGGACACCAAGTGCCTTTAATCGATCATCTTGCCTTGATGGCCAGAC
TCGAGCAGTGTGCTCAGTCCTCTCGTTGAGATTGAAACAAAGGAAAATAA
TATTTTAGAAATATTTTAGAAATAAAGCGAGAAATAACCCATTGTTATTT
GGTAAAAATAACTACATGTCGGATTTAATTAATCGTCGTTGATTTTAGGC
CTTGGTACCTCTCATTTGCTACCTACAAGCTTTTTTTATAGAGTTTGATC
TGTAAGAATATATTGGTCAAATTTGCCTAAATTTTAAGAACAGAACTAAG
AGGAGAATTAAACACCCTTTCGGTCCAAATAAACAGTTGAAGAGTACTGG
CGTGTATGCTGTAAAACTACCAAAATTGGTCAAGAACAAAGAAAGAAATA
TTTATACATTCTAAAAAATAACCACTAGAATTTTGCAGATCGTTTTAAAG
AGTTGAGAGACTAGTTTTATAAAAAAAATGCTGGCCCTTTTTTAACGATA
CTCTATGTAGATTACTAAATAATAACAACGGTCGCCCGTCACTATGATGT
TGTTATTGTGTCTGTTATGATAATATTAATCACAGGGATTTAACTTAACC
GCTTGGGTGTAAATTTACCTAGAAAAATATTATACAAGGTGTCCATAAGA
AAAATTTATGCTTTTGGTATTTTCAAAAATTTTCCAAACCCCCCCCCCGG
ACCTTATAAGAACACCCCCCGCCCGTTTATTAATCTCTAAGAATATTTTC
AGCTTTCAAAGAAAAGGCCCCTTATTATGCTCTAAAT Run BLAST on NCBI protein sequence of TCONS_00038016-protein >TCONS_00038016-protein ID=TCONS_00038016-protein|Name=TCONS_00038016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
XIEITSNETAINETANNEIEITSNETAINETANNDIEITSNETAINETAN
NEIEITSNETAINGTANSGIEITSNETAINETTNNEIEITSNETTINETA
NNEIKIISNETAINETANNEIEITSNETAINETANNEIEIISNETAINET
ANNEIEITSNETAINGTVNSGIEITNNETPINETANNEIESETDKKRKKQ
PENNKKNYPKRKKKKNQAGLEKVDEDVELVIAAPVCDRKSLAGKCVGLYT
ENPYEYWVFGVEKVSTKCVHGKFFECFDRENRLYRHYSDGQHQFYASIVR
RGVEQNDFFFFQLEKSKEGHQVPLIDHLALMARLEQCAQSSR Run BLAST on NCBI transcript from alignment at sc0001757:9624..11360 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038016 ID=TCONS_00038016|Name=TCONS_00038016|organism=Clytia hemisphaerica|type=transcript|length=1737bp|location=Sequence derived from alignment at sc0001757:9624..11360 (Clytia hemisphaerica)
ATTTAGAGCATAATAAGGGGCCTTTTCTTTGAAAGCTGAAAATATTCTTA
GAGATTAATAAACGGGCGGGGGGTGTTCTTATAAGGTCCGGGGGGGGGGT
TTGGAAAATTTTTGAAAATACCAAAAGCATAAATTTTTCTTATGGACACC
TTGTATAATATTTTTCTAGGTAAATTTACACCCAAGCGGTTAAGTTAAAT
CCCTGTGATTAATATTATCATAACAGACACAATAACAACATCATAGTGAC
GGGCGACCGTTGTTATTATTTAGTAATCTACATAGAGTATCGTTAAAAAA
GGGCCAGCATTTTTTTTATAAAACTAGTCTCTCAACTCTTTAAAACGATC
TGCAAAATTCTAGTGGTTATTTTTTAGAATGTATAAATATTTCTTTCTTT
GTTCTTGACCAATTTTGGTAGTTTTACAGCATACACGCCAGTACTCTTCA
ACTGTTTATTTGGACCGAAAGGGTGTTTAATTCTCCTCTTAGTTCTGTTC
TTAAAATTTAGGCAAATTTGACCAATATATTCTTACAGATCAAACTCTAT
AAAAAAAGCTTGTAGGTAGCAAATGAGAGGTACCAAGGCCTAAAATCAAC
GACGATTAATTAAATCCGACATGTAGTTATTTTTACCAAATAACAATGGG
TTATTTCTCGCTTTATTTCTAAAATATTTCTAAAATATTATTTTCCTTTG
TTTCAATCTCAACGAGAGGACTGAGCACACTGCTCGAGTCTGGCCATCAA
GGCAAGATGATCGATTAAAGGCACTTGGTGTCCCTCTTTAGACTTCTCCA
GttggaaaaaaaagaagtcGTTTTGCTCTACTCCTCTTCTAACGATACTC
GCATAGAACTGGTGTTGGCCGTCACTATAATGTCGATAAAGCCTATTTTC
TCTATCGAAGCATTCGAAAAATTTACCATGAACACACTTTGTAGAGACCT
TCTCCACACCAAAAACCCAATATTCATATGGGTTTTCCGTGTAGAGACCT
ACACACTTGCCAGCAAGGGACTTACGGTCACATACAGGAGCTGCTATAAC
TAATTCTACGTCTTCGTCTACTTTCTCCAAACCCGCctgattcttcttct
tcttcctcttaGGATAATTCTTCTTGTTATTTTCCGGTTGTTTTTTTCGT
TTCTTATCGGTTTCGCTTTCAATCTCGTTGTTTGCTGTCTCGTTAATTGG
TGTTTCGTTGTTGGTAATCTCAATCCCGCTGTTTACTGTCCCGTTAATTG
CTGTTTCGTTGCTGGTAATCTCTATCTCGTTGTTTGCTGTCTCGTTAATT
GCTGTTTCGTTGCTGATAATCTCAATCTCGTTGTTTGCTGTCTCGTTAAT
TGCTGTTTCGTTGCTGGTAATCTCTATCTCGTTGTTTGCTGTCTCGTTAA
TTGCTGTTTCGTTGCTGATAATCTTAATCTCGTTGTTTGCTGTCTCGTTA
ATTGTTGTTTCGTTGCTGGTAATCTCAATCTCGTTGTTTGTTGTCTCGTT
AATTGCTGTTTCGTTGCTGGTAATCTCAATCCCGCTGTTTGCTGTCCCGT
TAATTGCTGTTTCGTTGCTGGTAATCTCAATCTCGTTGTTTGCTGTCTCG
TTAATTGCTGTTTCGTTGCTGGTAATCTCAATATCGTTGTTTGCTGTCTC
GTTAATTGCTGTTTCGTTGCTGGTAATCTCAATCTCGTTGTTTGCTGTCT
CGTTAATTGCTGTTTCGTTGCTGGTAATCTCAATATN Coding sequence (CDS) from alignment at sc0001757:9624..11360 >TCONS_00038016 ID=TCONS_00038016|Name=TCONS_00038016|organism=Clytia hemisphaerica|type=CDS|length=1029bp|location=Sequence derived from alignment at sc0001757:9624..11360 (Clytia hemisphaerica)
TCAACGAGAGGACTGAGCACACTGCTCGAGTCTGGCCATCAAGGCAAGAT
GATCGATTAAAGGCACTTGGTGTCCCTCTTTAGACTTCTCCAGttggaaa
aaaaagaagtcGTTTTGCTCTACTCCTCTTCTAACGATACTCGCATAGAA
CTGGTGTTGGCCGTCACTATAATGTCGATAAAGCCTATTTTCTCTATCGA
AGCATTCGAAAAATTTACCATGAACACACTTTGTAGAGACCTTCTCCACA
CCAAAAACCCAATATTCATATGGGTTTTCCGTGTAGAGACCTACACACTT
GCCAGCAAGGGACTTACGGTCACATACAGGAGCTGCTATAACTAATTCTA
CGTCTTCGTCTACTTTCTCCAAACCCGCctgattcttcttcttcttcctc
ttaGGATAATTCTTCTTGTTATTTTCCGGTTGTTTTTTTCGTTTCTTATC
GGTTTCGCTTTCAATCTCGTTGTTTGCTGTCTCGTTAATTGGTGTTTCGT
TGTTGGTAATCTCAATCCCGCTGTTTACTGTCCCGTTAATTGCTGTTTCG
TTGCTGGTAATCTCTATCTCGTTGTTTGCTGTCTCGTTAATTGCTGTTTC
GTTGCTGATAATCTCAATCTCGTTGTTTGCTGTCTCGTTAATTGCTGTTT
CGTTGCTGGTAATCTCTATCTCGTTGTTTGCTGTCTCGTTAATTGCTGTT
TCGTTGCTGATAATCTTAATCTCGTTGTTTGCTGTCTCGTTAATTGTTGT
TTCGTTGCTGGTAATCTCAATCTCGTTGTTTGTTGTCTCGTTAATTGCTG
TTTCGTTGCTGGTAATCTCAATCCCGCTGTTTGCTGTCCCGTTAATTGCT
GTTTCGTTGCTGGTAATCTCAATCTCGTTGTTTGCTGTCTCGTTAATTGC
TGTTTCGTTGCTGGTAATCTCAATATCGTTGTTTGCTGTCTCGTTAATTG
CTGTTTCGTTGCTGGTAATCTCAATCTCGTTGTTTGCTGTCTCGTTAATT
GCTGTTTCGTTGCTGGTAATCTCAATATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038016-exon-sc0001757-1491911889:9624..11360 | TCONS_00038016-exon-sc0001757-1491911889:9624..11360 | Clytia hemisphaerica | exon |
| TCONS_00038016-exon-sc0001757-1510915933:9624..11360 | TCONS_00038016-exon-sc0001757-1510915933:9624..11360 | Clytia hemisphaerica | exon |
| TCONS_00038016-exon-sc0001757-1575043694:9624..11360 | TCONS_00038016-exon-sc0001757-1575043694:9624..11360 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001757 | supercontig | sc0001757:9624..11360 . |
Blast
The following BLAST results are available for this feature:
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