TCONS_00038015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038015
Unique NameTCONS_00038015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038015 ID=TCONS_00038015|Name=TCONS_00038015|organism=Clytia hemisphaerica|type=transcript|length=385bp
ttaaggaTGAATACTAAAAAATCAAAGGTTACTGCTGCATCATTTGGATC
TTTTCTTCTTCAAGCTggtgagaaaaagaaaagaaaaaaaagacgtCCAT
TGGTAATTGTTTATGAAAGAGATCATGAAGGGAAGAAGAGTgtacaaaaa
taataaacgcTATAAAAGAAGAAACCAAGGTACATCAAATCCTCAAAATG
AGCCCGTTTGtgattgaatttttgattttttagtttGCCACCCGATGTTC
CCTCATCTTTCAGCTGGTGGTCATGGCAACAgacattctcaaactttcag
aAGTTTACTTTTCATTATTACCAGGACTGTGGAAAAAGATATTCTGCCAT
GTAGGATCAGTAGGCTTTTTTATATTAACAAAAGC
Run BLAST on NCBI

transcript from alignment at sc0001757:32515..32899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038015 ID=TCONS_00038015|Name=TCONS_00038015|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at sc0001757:32515..32899- (Clytia hemisphaerica)
TTAAGGATGAATACTAAAAAATCAAAGGTTACTGCTGCATCATTTGGATC
TTTTCTTCTTCAAGCTGGTGAGAAAAAGAAAAGAAAAAAAAGACGTCCAT
TGGTAATTGTTTATGAAAGAGATCATGAAGGGAAGAAGAGTGTACAAAAA
TAATAAACGCTATAAAAGAAGAAACCAAGGTACATCAAATCCTCAAAATG
AGCCCGTTTGTGATTGAATTTTTGATTTTTTAGTTTGCCACCCGATGTTC
CCTCATCTTTCAGCTGGTGGTCATGGCAACAGACATTCTCAAACTTTCAG
AAGTTTACTTTTCATTATTACCAGGACTGTGGAAAAAGATATTCTGCCAT
GTAGGATCAGTAGGCTTTTTTATATTAACAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022682XLOC_022682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038015-exon-sc0001757-1575043694:32515..32899TCONS_00038015-exon-sc0001757-1575043694:32515..32899Clytia hemisphaericaexon
TCONS_00038015-exon-sc0001757-1510915933:32515..32899TCONS_00038015-exon-sc0001757-1510915933:32515..32899Clytia hemisphaericaexon
TCONS_00038015-exon-sc0001757-1491911889:32515..32899TCONS_00038015-exon-sc0001757-1491911889:32515..32899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001757supercontigsc0001757:32515..32899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12538	1.56906	0.846058	1.21074	0.543679	0.721036	0.518321	0.970491	0.43924	0.791567	0	0.796633	0.212815	1.28859	0.448988	1.11312	0.921506	1.38698	1.13225	0.748972	2.66986	0.666258	0.696697	0.590108	0	0	1.54155	0	0.509184	0.380649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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