TCONS_00038011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038011
Unique NameTCONS_00038011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038011 ID=TCONS_00038011|Name=TCONS_00038011|organism=Clytia hemisphaerica|type=transcript|length=1407bp
ttaaggaTGAATACTAAAAAATCAAAGGTTACTGCTGCATCATTTGGATC
TTTTCTTCTTCAAGCTggtgagaaaaagaaaagaaaaaaaagacgtCCAT
TGGTAATTGTTTATGAAAGAGATCATGAAGGGAAGAAGAGTgtacaaaaa
taataaacgcTATAAAAGAAGAAACCAAGCTGAATATTCCGACCTTGATA
CTGTAACTTGTGATGACAGTGAAATTGAAGGTCGATACGAGTTACAGAAA
TTACTTTGTCTATGCTCCCTATGTAATTTCACATTCGACCCATTTAATGT
TTCAACATTGATATCATGTGGGTACTGATGGCCTTGTCATCTTGAGTTCT
TCCTATATTATTAAAGAAGAAGTCTTTCTCAATTGGGATGTGTACAGAAA
AAGGATGCCAGGCAGCTCACAGAAATCGTTTTTGGATTCATTGAATGATT
TGACAAGTCATTTTGGACGAGTTGGTTCAATTTATTCTCATCCATTTGAC
ATTGTTTTCCGAGAGTGGTTTAATGTGCAAGCAGAATATGATACGTTTAC
AGCACATACGCTGGTTTGAGTGTCCTTGTTGTAGCGTTGCTCAACACAGT
TGCCATGTTGATGGCAACTGTAAACTTAAAAATAAATGGCTCCCTTTTTC
CACAGAAGCCATAGTCAATCTCTGTATGGTGATATGTTTATTGTGGATGA
CAAAGATGTAAAGACTTTCATCGAAAAGATCTATCACTCCAAAACTAAAT
ACAAACAAAATGTtggaagaaagaagaaatcaCTTGACGAGACAGGGCTG
GAAGTAGCCACGTGTCGACATGTAATCGCACAGAAAGCAATAAATATGAA
ACAAGgtgaACAATATGGGTATGCACTTTATCTCATGAAACATTACATGG
TTAAGTGGAAAGTAGAATATTGCTGGGCAGATGTCATGTGTAAGTTGTGG
AAGTTTGCTCAAAGGATTGATCCGGATATATGTAAATTAATGAAGCCAGC
CTTATCAACAATGCATGCTAAAGGACATAGCATACAATGCcagGTAAATT
GGGATGGGTTATGGATAGAAGGAACAGGCAGGTCGACAGGAGAAGAAACT
GAGCAATTCTTTAGTTTAGATGTCGAAATACAACCAAATATCAATTTCCT
GAAAGTAAGTACCGGGTGAACCACGAAAAAGTATGAGAGTTTGGCAACGT
GGTGCGGCCAGGACAGTgtgatttttggagaaattaAGTACTTTCATTGA
TATTTTTCTGAATAGAATTGCTCAAATTTAATACCCTCTTTTTCACGTTG
TTTGATGCTTTTGTAAAGTGTTGATTTTTACCTATTATTGCACATTCAGT
CGTACAATTAACGATTACattaagggaataaattaatgcaagAAATAATT
AAAGCGG
Run BLAST on NCBI

transcript from alignment at sc0001757:29035..32899-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038011 ID=TCONS_00038011|Name=TCONS_00038011|organism=Clytia hemisphaerica|type=transcript|length=3865bp|location=Sequence derived from alignment at sc0001757:29035..32899- (Clytia hemisphaerica)
TTAAGGATGAATACTAAAAAATCAAAGGTTACTGCTGCATCATTTGGATC
TTTTCTTCTTCAAGCTGGTGAGAAAAAGAAAAGAAAAAAAAGACGTCCAT
TGGTAATTGTTTATGAAAGAGATCATGAAGGGAAGAAGAGTGTACAAAAA
TAATAAACGCTATAAAAGAAGAAACCAAGGTACATCAAATCCTCAAAATG
AGCCCGTTTGTGATTGAATTTTTGATTTTTTAGTTTGCCACCCGATGTTC
CCTCATCTTTCAGCTGGTGGTCATGGCAACAGACATTCTCAAACTTTCAG
AAGTTTACTTTTCATTATTACCAGGACTGTGGAAAAAGATATTCTGCCAT
GTAGGATCAGTAGGCTTTTTTATATTAACAAAAGCATAGGGTTCCAGGTT
CCACCTTGTGAGCAGATTATCATTATATAATAAAAAGGATACTTGATATT
ACACACTATTAAGTAATATTCATGCCAACCCCCCCCCCAAATTGTGAATT
TTTTAATTTTCTAACCAACCCTCGTGTGCTAGAGCTGTCTCTTAATAAGT
CACATTCCTTCAGGGTAGTAATGCAATTATTGTATATGAATAACCTGAAA
ATTTCCTTCGCTTCTATAATTTCTTTGTTGTGTTTTTGATGTATTTGTCA
AATGATTTATTAATAAAGAACATTTTTTGCAATTTCTTCAAATCAGCTGA
ATATTCCGACCTTGATACTGTAACTTGTGATGACAGTGAAATTGAAGGTA
AAAGTTTTACACATTTTAAAGAAGATATTTTTATTGTACCGGGTGTCCCA
GAAAAAAGTTCTGCTCTTTGAAGTGAATTTTCTAAAGTCCTATGAATTTG
TAACAATCAATAATTTTGCATTGGAAAGAGGAAGGATAGTGTTTACAACT
TTTGGTTTGATTTTCCCCAAATTTTAGTCAAAATTTCTGGAAATTGTGAC
CCTTTGAGAGAAATTTTTTTTGATATTTGTGATTTTGGGACAGTTTGGGA
CCCTTAAAAATTTGTACCCCTTTGAGAAATTTGAGGCATTTAAAAAATGT
ACCCTTATGGCTCGCACATATCCGACACCCATTTTGCCTAAGTAGTGTGA
ATAGATATCGGAGAAATTCTTTTCTGAGGTTGCGGAAAGCTTCAATTTTC
TAAAAGACTTTCAATGGGTGAAATTGAAAAGAGGCAAATCGAGACAATAT
GAAAATCAGGAGGCTTGGAACGAGCAAAAGACTATTGGACTCAAAGTTAT
CTAGAGAGAGAATTTGTGAAAAATTCTTGTTCGAAATGCAATACTTTGAA
CGCATTGATCTTTTGTGGAGATTGCTGGTCTTTTTTTTGTTCTTTGTGTG
ATGTGAATTTACATTCAAAGCATACTTTTCACAATCGGAAAGCATTATTG
AATGGATTTTTCAAGCCAATTTCTCCAAATGAGTATATAGCCGACGATGG
TATACAGATAGGGAGTAAGTAAAATGGCGAAATAGTTTTTTTATCAATTT
TTCCTTTTTGAATTGAAGTCAAAAATGATTAAATGAAAACCTCACTCTAT
TTTCTGAGTTGAAATCAATGATTTTAGTACAATATTATTAATTTTTATAA
TTATAGCTAGACGTGTACCATTAGTCATTTCTAAATGCACAGCATGCAAC
ACTGCAACTTATAACTTCGAAATGTTAGATGTCAACGAAACATGCATAGT
TGTTACAAACAAAGGTCAGTAAACTATGAAAACTATGAAAATTTTTAATA
TAGTTCTGTGCAGCTCAGTAATTTAGACTTTTTGTGTAATAAGTAGGCTT
TTTCATAAATTACGTCCTGAACAAACAACACTTGCCTCGTTATTCCTATG
ATAACTGATTGCCAGAGAAATTAATCTGTTGTACGTTTGGCACTTTCAAA
ACAAGCCAGTCATACAAAATAATGTATGAAAAGGCTTATTGTTTTGAAAC
CATGTCATGTTCTTGTTTCAGGTCGATACGAGTTACAGAAATTACTTTGT
CTATGCTCCCTATGTAATTTCACATTCGACCCATTTAATGTTTCAACATT
GATATCATGTGGGTACTGATGGCCTTGTCATCTTGAGTTCTTCCTATATT
ATTAAAGAAGAAGTCTTTCTCAATTGGGATGTGTACAGAAAAAGGATGCC
AGGCAGCTCACAGAAATCGTTTTTGGATTCATTGAATGATTTGACAAGTC
ATTTTGGACGAGTGAGAATACATTTTCTGAGAGTTTTTTTTAAAATACTG
TATTGGTTTCAGTTTTTTTTCTTTAACAGCAGGATTTGCATTAGATTGTT
ATCCTACAAAAAGTTTATTTTAAAGAATCTGCAGAATATTTTTACCATGT
CACTTTCATCACGTTTTAGGTTGGTTCAATTTATTCTCATCCATTTGACA
TTGTTTTCCGAGAGTGGTTTAATGTGCAAGCAGAATATGATACGTTTACA
GCACATACGCTGGTTTGAGTGTCCTTGTTGTAGCGTTGCTCAACACAGTT
GCCATGTTGATGGCAACTGTAAACTTAAAAATAAATGGCTCCCTTTTTCC
ACAGAAGCCATAGTCAATCTCTGTATGGTGATATGTTTATTGTGGATGAC
AAAGATGTAAAGACTTTCATCGAAAAGATCTATCACTCCAAAACTAAATA
CAAACAAGTATGGTTAATTTTGTAAGATGAATATAAAGTATTATATTCAA
AATAATATGTTTTCAATATAATGATACAAGGCACAAGAAATTTTTATTTT
AGTACATTTATTATTCAATATTCGTTTGTTGCTGATTTATGATCTTCAGG
AGAATGACAATATTTGTGGTGGTTCATGGACTGCTGCCAAGAATGTTGGA
AGAAAGAAGAAATCACTTGACGAGACAGGGCTGGAAGTAGCCACGTGTCG
ACATGTAATCGCACAGAAAGCAATAAATATGAAACAAGGTGATTTCTGAA
TAAAAATAACTGTTCTATTTTTATCGTTTTCACTTTTTGTTTCGTATATT
GGTATCGCTTTACTGAAAAATCATATTTTTATCAATATTTATTTTTTTTA
AAAGGTGAACAATATGGGTATGCACTTTATCTCATGAAACATTACATGGT
TAAGTGGAAAGTAGAATATTGCTGGGCAGATGTCATGTGTAAGTTGTGGA
AGTTTGCTCAAAGGATTGATCCGGATATATGTAAATTAATGAAGCCAGCC
TTATCAACAATGCATGCTAAAGGACATAGCATACAATGCCAGGTTTTTAT
TTTCATTTTATGATATATTGTATTTTACATACTAACTAACATGAAAGTGA
AGAGTCTGTACTCATAAAGAAGGGTTTGTACGACTCCCTTATTAAATATT
TATTCAAATAGTTTCAAAAATATTTCTTCTTTAAAACCTTCAATAAGAAA
ATTTTGAATATTCTTAAAAGAAAGTGAGCAAAATTTCCCAAAAACCTACT
TCGGTGAAAAACATTGTTTAGGTTAACATTCTTTTTTCTTGCTTTTTGTA
GGTAAATTGGGATGGGTTATGGATAGAAGGAACAGGCAGGTCGACAGGAG
AAGAAACTGAGCAATTCTTTAGTTTAGATGTCGAAATACAACCAAATATC
AATTTCCTGAAAGTAAGTACCGGGTGAACCACGAAAAAGTATGAGAGTTT
GGCAACGTGGTGCGGCCAGGACAGTGTGATTTTTGGAGAAATTAAGTACT
TTCATTGATATTTTTCTGAATAGAATTGCTCAAATTTAATACCCTCTTTT
TCACGTTGTTTGATGCTTTTGTAAAGTGTTGATTTTTACCTATTATTGCA
CATTCAGTCGTACAATTAACGATTACATTAAGGGAATAAATTAATGCAAG
AAATAATTAAAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022682XLOC_022682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038011-exon-sc0001757-1575043694:32721..32899TCONS_00038011-exon-sc0001757-1575043694:32721..32899Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1575043694:32153..32203TCONS_00038011-exon-sc0001757-1575043694:32153..32203Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1575043694:30689..30928TCONS_00038011-exon-sc0001757-1575043694:30689..30928Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1575043694:30243..30530TCONS_00038011-exon-sc0001757-1575043694:30243..30530Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1575043694:29962..30058TCONS_00038011-exon-sc0001757-1575043694:29962..30058Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1575043694:29658..29845TCONS_00038011-exon-sc0001757-1575043694:29658..29845Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1575043694:29035..29398TCONS_00038011-exon-sc0001757-1575043694:29035..29398Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:32721..32899TCONS_00038011-exon-sc0001757-1510915933:32721..32899Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:32153..32203TCONS_00038011-exon-sc0001757-1510915933:32153..32203Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:30689..30928TCONS_00038011-exon-sc0001757-1510915933:30689..30928Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:30243..30530TCONS_00038011-exon-sc0001757-1510915933:30243..30530Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:29962..30058TCONS_00038011-exon-sc0001757-1510915933:29962..30058Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:29658..29845TCONS_00038011-exon-sc0001757-1510915933:29658..29845Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1510915933:29035..29398TCONS_00038011-exon-sc0001757-1510915933:29035..29398Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:32721..32899TCONS_00038011-exon-sc0001757-1491911889:32721..32899Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:32153..32203TCONS_00038011-exon-sc0001757-1491911889:32153..32203Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:30689..30928TCONS_00038011-exon-sc0001757-1491911889:30689..30928Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:30243..30530TCONS_00038011-exon-sc0001757-1491911889:30243..30530Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:29962..30058TCONS_00038011-exon-sc0001757-1491911889:29962..30058Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:29658..29845TCONS_00038011-exon-sc0001757-1491911889:29658..29845Clytia hemisphaericaexon
TCONS_00038011-exon-sc0001757-1491911889:29035..29398TCONS_00038011-exon-sc0001757-1491911889:29035..29398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001757supercontigsc0001757:29035..32899 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.772291	7.53681e-09	0.970716	0	8.51049e-09	0	0.638542	0	9.90412e-10	0.421118	0	0	0	0	0	1.27736	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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