TCONS_00038009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038009
Unique NameTCONS_00038009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1068

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038009 ID=TCONS_00038009|Name=TCONS_00038009|organism=Clytia hemisphaerica|type=transcript|length=1068bp
TTCCGACCTTGATACTGTAACTTGTGATGACAGTGAAATTGAAGGTCGAT
ACGAGTTACAGAAATTACTTTGTCTATGCTCCCTATGTAATTTCACATTC
GACCCATTTAATGTTTCAACATTGATATCATGTTGGTTCAATTTATTCTC
ATCCATTTGACATTGTTTTCCGAGAGTGGTTTAATGTGCAAGCAGAATAT
GATACGTTTACAGCACATACGCTGGTTTGAGTGTCCTTGTTGTAGCGTTG
CTCAACACAGTTGCCATGTTGATGGCAACTGTAAACTTAAAAATAAATGG
CTCCCTTTTTCCACAGAAGCCATAGTCAATCTCTGTATGGTGATATGTTT
ATTGTGGATGACAAAGATGTAAAGACTTTCATCGAAAAGATCTATCACTC
CAAAACTAAATACAAACAAAATGTtggaagaaagaagaaatcaCTTGACG
AGACAGGGCTGGAAGTAGCCACGTGTCGACATGTAATCGCACAGAAAGCA
ATAAATATGAAACAAGgtgaACAATATGGGTATGCACTTTATCTCATGAA
ACATTACATGGTTAAGTGGAAAGTAGAATATTGCTGGGCAGATGTCATGT
GTAAGTTGTGGAAGTTTGCTCAAAGGATTGATCCGGATATATGTAAATTA
ATGAAGCCAGCCTTATCAACAATGCATGCTAAAGGACATAGCATACAATG
CcagGTAAATTGGGATGGGTTATGGATAGAAGGAACAGGCAGGTCGACAG
GAGAAGAAACTGAGCAATTCTTTAGTTTAGATGTCGAAATACAACCAAAT
ATCAATTTCCTGAAAGTAAGTACCGGGTGAACCACGAAAAAGTATGAGAG
TTTGGCAACGTGGTGCGGCCAGGACAGTgtgatttttggagaaattaAGT
ACTTTCATTGATATTTTTCTGAATAGAATTGCTCAAATTTAATACCCTCT
TTTTCACGTTGTTTGATGCTTTTGTAAAGTGTTGATTTTTACCTATTATT
GCACATTCAGTCGTACAATTAACGATTACattaagggaataaattaatgc
aagAAATAATTAAAGCGG
Run BLAST on NCBI

transcript from alignment at sc0001757:29035..32196-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038009 ID=TCONS_00038009|Name=TCONS_00038009|organism=Clytia hemisphaerica|type=transcript|length=3162bp|location=Sequence derived from alignment at sc0001757:29035..32196- (Clytia hemisphaerica)
TTCCGACCTTGATACTGTAACTTGTGATGACAGTGAAATTGAAGGTAAAA
GTTTTACACATTTTAAAGAAGATATTTTTATTGTACCGGGTGTCCCAGAA
AAAAGTTCTGCTCTTTGAAGTGAATTTTCTAAAGTCCTATGAATTTGTAA
CAATCAATAATTTTGCATTGGAAAGAGGAAGGATAGTGTTTACAACTTTT
GGTTTGATTTTCCCCAAATTTTAGTCAAAATTTCTGGAAATTGTGACCCT
TTGAGAGAAATTTTTTTTGATATTTGTGATTTTGGGACAGTTTGGGACCC
TTAAAAATTTGTACCCCTTTGAGAAATTTGAGGCATTTAAAAAATGTACC
CTTATGGCTCGCACATATCCGACACCCATTTTGCCTAAGTAGTGTGAATA
GATATCGGAGAAATTCTTTTCTGAGGTTGCGGAAAGCTTCAATTTTCTAA
AAGACTTTCAATGGGTGAAATTGAAAAGAGGCAAATCGAGACAATATGAA
AATCAGGAGGCTTGGAACGAGCAAAAGACTATTGGACTCAAAGTTATCTA
GAGAGAGAATTTGTGAAAAATTCTTGTTCGAAATGCAATACTTTGAACGC
ATTGATCTTTTGTGGAGATTGCTGGTCTTTTTTTTGTTCTTTGTGTGATG
TGAATTTACATTCAAAGCATACTTTTCACAATCGGAAAGCATTATTGAAT
GGATTTTTCAAGCCAATTTCTCCAAATGAGTATATAGCCGACGATGGTAT
ACAGATAGGGAGTAAGTAAAATGGCGAAATAGTTTTTTTATCAATTTTTC
CTTTTTGAATTGAAGTCAAAAATGATTAAATGAAAACCTCACTCTATTTT
CTGAGTTGAAATCAATGATTTTAGTACAATATTATTAATTTTTATAATTA
TAGCTAGACGTGTACCATTAGTCATTTCTAAATGCACAGCATGCAACACT
GCAACTTATAACTTCGAAATGTTAGATGTCAACGAAACATGCATAGTTGT
TACAAACAAAGGTCAGTAAACTATGAAAACTATGAAAATTTTTAATATAG
TTCTGTGCAGCTCAGTAATTTAGACTTTTTGTGTAATAAGTAGGCTTTTT
CATAAATTACGTCCTGAACAAACAACACTTGCCTCGTTATTCCTATGATA
ACTGATTGCCAGAGAAATTAATCTGTTGTACGTTTGGCACTTTCAAAACA
AGCCAGTCATACAAAATAATGTATGAAAAGGCTTATTGTTTTGAAACCAT
GTCATGTTCTTGTTTCAGGTCGATACGAGTTACAGAAATTACTTTGTCTA
TGCTCCCTATGTAATTTCACATTCGACCCATTTAATGTTTCAACATTGAT
ATCATGTGGGTACTGATGGCCTTGTCATCTTGAGTTCTTCCTATATTATT
AAAGAAGAAGTCTTTCTCAATTGGGATGTGTACAGAAAAAGGATGCCAGG
CAGCTCACAGAAATCGTTTTTGGATTCATTGAATGATTTGACAAGTCATT
TTGGACGAGTGAGAATACATTTTCTGAGAGTTTTTTTTAAAATACTGTAT
TGGTTTCAGTTTTTTTTCTTTAACAGCAGGATTTGCATTAGATTGTTATC
CTACAAAAAGTTTATTTTAAAGAATCTGCAGAATATTTTTACCATGTCAC
TTTCATCACGTTTTAGGTTGGTTCAATTTATTCTCATCCATTTGACATTG
TTTTCCGAGAGTGGTTTAATGTGCAAGCAGAATATGATACGTTTACAGCA
CATACGCTGGTTTGAGTGTCCTTGTTGTAGCGTTGCTCAACACAGTTGCC
ATGTTGATGGCAACTGTAAACTTAAAAATAAATGGCTCCCTTTTTCCACA
GAAGCCATAGTCAATCTCTGTATGGTGATATGTTTATTGTGGATGACAAA
GATGTAAAGACTTTCATCGAAAAGATCTATCACTCCAAAACTAAATACAA
ACAAGTATGGTTAATTTTGTAAGATGAATATAAAGTATTATATTCAAAAT
AATATGTTTTCAATATAATGATACAAGGCACAAGAAATTTTTATTTTAGT
ACATTTATTATTCAATATTCGTTTGTTGCTGATTTATGATCTTCAGGAGA
ATGACAATATTTGTGGTGGTTCATGGACTGCTGCCAAGAATGTTGGAAGA
AAGAAGAAATCACTTGACGAGACAGGGCTGGAAGTAGCCACGTGTCGACA
TGTAATCGCACAGAAAGCAATAAATATGAAACAAGGTGATTTCTGAATAA
AAATAACTGTTCTATTTTTATCGTTTTCACTTTTTGTTTCGTATATTGGT
ATCGCTTTACTGAAAAATCATATTTTTATCAATATTTATTTTTTTTAAAA
GGTGAACAATATGGGTATGCACTTTATCTCATGAAACATTACATGGTTAA
GTGGAAAGTAGAATATTGCTGGGCAGATGTCATGTGTAAGTTGTGGAAGT
TTGCTCAAAGGATTGATCCGGATATATGTAAATTAATGAAGCCAGCCTTA
TCAACAATGCATGCTAAAGGACATAGCATACAATGCCAGGTTTTTATTTT
CATTTTATGATATATTGTATTTTACATACTAACTAACATGAAAGTGAAGA
GTCTGTACTCATAAAGAAGGGTTTGTACGACTCCCTTATTAAATATTTAT
TCAAATAGTTTCAAAAATATTTCTTCTTTAAAACCTTCAATAAGAAAATT
TTGAATATTCTTAAAAGAAAGTGAGCAAAATTTCCCAAAAACCTACTTCG
GTGAAAAACATTGTTTAGGTTAACATTCTTTTTTCTTGCTTTTTGTAGGT
AAATTGGGATGGGTTATGGATAGAAGGAACAGGCAGGTCGACAGGAGAAG
AAACTGAGCAATTCTTTAGTTTAGATGTCGAAATACAACCAAATATCAAT
TTCCTGAAAGTAAGTACCGGGTGAACCACGAAAAAGTATGAGAGTTTGGC
AACGTGGTGCGGCCAGGACAGTGTGATTTTTGGAGAAATTAAGTACTTTC
ATTGATATTTTTCTGAATAGAATTGCTCAAATTTAATACCCTCTTTTTCA
CGTTGTTTGATGCTTTTGTAAAGTGTTGATTTTTACCTATTATTGCACAT
TCAGTCGTACAATTAACGATTACATTAAGGGAATAAATTAATGCAAGAAA
TAATTAAAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022682XLOC_022682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038009-exon-sc0001757-1575043694:32153..32196TCONS_00038009-exon-sc0001757-1575043694:32153..32196Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1575043694:30842..30928TCONS_00038009-exon-sc0001757-1575043694:30842..30928Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1575043694:30243..30530TCONS_00038009-exon-sc0001757-1575043694:30243..30530Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1575043694:29962..30058TCONS_00038009-exon-sc0001757-1575043694:29962..30058Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1575043694:29658..29845TCONS_00038009-exon-sc0001757-1575043694:29658..29845Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1575043694:29035..29398TCONS_00038009-exon-sc0001757-1575043694:29035..29398Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1510915933:32153..32196TCONS_00038009-exon-sc0001757-1510915933:32153..32196Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1510915933:30842..30928TCONS_00038009-exon-sc0001757-1510915933:30842..30928Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1510915933:30243..30530TCONS_00038009-exon-sc0001757-1510915933:30243..30530Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1510915933:29962..30058TCONS_00038009-exon-sc0001757-1510915933:29962..30058Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1510915933:29658..29845TCONS_00038009-exon-sc0001757-1510915933:29658..29845Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1510915933:29035..29398TCONS_00038009-exon-sc0001757-1510915933:29035..29398Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1491911889:32153..32196TCONS_00038009-exon-sc0001757-1491911889:32153..32196Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1491911889:30842..30928TCONS_00038009-exon-sc0001757-1491911889:30842..30928Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1491911889:30243..30530TCONS_00038009-exon-sc0001757-1491911889:30243..30530Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1491911889:29962..30058TCONS_00038009-exon-sc0001757-1491911889:29962..30058Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1491911889:29658..29845TCONS_00038009-exon-sc0001757-1491911889:29658..29845Clytia hemisphaericaexon
TCONS_00038009-exon-sc0001757-1491911889:29035..29398TCONS_00038009-exon-sc0001757-1491911889:29035..29398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001757supercontigsc0001757:29035..32196 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.386953	0.00185913	0	0.126706	0	0	0.503858	0.137917	0.655916	0.474543	0.441092	0.406774	0.820653	1.1251	1.9014	1.60142	0.918087	1.63829	1.41055	1.61213	0.471317	0.375731	0	0	0	0	0.483248	0.144149	0.079646
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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