TCONS_00038007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038007
Unique NameTCONS_00038007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038007 ID=TCONS_00038007|Name=TCONS_00038007|organism=Clytia hemisphaerica|type=transcript|length=1708bp
GTAATTTCTTGATGTTCCAAATGATTTGTCGCCTTCTTATTCCCGACATC
TTACTTTCATTTGATCATTTTTGATTGGTCAGCAATCGGTAGAAAGAGAA
TGGGAAAATGCTCGGGAAGATTTTTCAACTCATGCTAAAAAGACGAGAAT
CAATACAAACAACATGCCAGCTATCGTGGAAGATATCAAAGCTGCTGCAC
TTCCAGATAAATGTAAAAGAAGATCCGTTTACCGTATGCATAATTGGCAA
GTGCACCAATGCTATCAAAAAGAATTTGGTCCTACTTGAATGCACCAGAG
GAAGTAAGatcaatgaaaatgaaaaacttaaaatataCCAAAGAAGTTTT
CCGTGGATCTACAATCAAACCAACTAAAGGTTACAAGccgaaGATAAAAG
ATTACTCGCTGAACTGTACATGAAGATAAAACGATCTGAAGAAGAACTCG
ATCTGAAGAAGAACTCGATCTGCTGAAACGAGACATGAATAGATATTTGT
CGTTTTatcgaacaaaaattactgAACTGGAATATATCATAGAGACCGAA
TCGAATAATGCAGTTGAAATTATTATGGCAAAAAGACGCTTGAGTTTTGC
ACAACATCAACTCGCTGACGGTGTTCAGTATTTTTCCACAATTTTTAACG
CCGGACATTCGATTCCGATAGAATTTCGAATTAATTTTGAAGACGATGAA
AATCAACAAGTGGAAGAAGAAACTTTTGTTCCTCAAGAAGATTTGGTAAT
TCCGCTGCTGAGTCATGATATGTTGAAAGACCTGGCAGTAGAGGTCTCTA
GCAATTTCAACATAGATGATTGTTTGATGAGTATTGATGGAAATGTTAGT
AGCCCTTCGATCTCAGTCAAGGAGCAATCGGTGGTCGAAACGGAAGCTCT
GCATGTACCGTGATTTCACTTTAACTGGTTATTATGAGACGAGCTCAAAG
TGTCACTGATAAAGTTTTAACTTTTGTCTTGATTTCAAATGAAATCTTAT
GCATTCATCAGAGAAAgtaatgaagatttttttttttcgattcccACGCG
AGCCCACCTAACGGTGCATGTGTTTATATGGTACCGGTTGAACACTTCGA
TGAATTTATGAGAGAAATCTTTAAGGAACAATATGTGAATATTGGAGTCT
TCACATGTCAATAACttctttatttttacataatatAGTAAATTCATCCA
AACTTTCTGGTTTAGAACCTTTtgcaaataattattttgatctttttgtg
tGCGTATGACTTAATCCAGGTTTTTTAATCGATTTTTAGTAGAAAACAAG
AATTTATTTAAATCTTGATTTATTTCTGtgctcattttctttttcgtaag
gaaacttttataagcataattaAGCTGAAACTTAAATCGATCATGACTGC
TAGGCATACCTTTAAGCACAATTGCTAAAGTTTTGTGAAACGAAATGAAG
AACACCGAAATTTGCCCTCACAAACGGGTGTTGCCTTTAGGAAAAATGAT
GCAATCTAACATTTACATACCACAAGCATCCCCCAATAAGTTTTTCATGG
TTTTTGTATTAtgaatttttcaattattttataCCCTGTACCGAAAATAC
AGTAATTTTCTTTTAACATAATGGTGGACATAATATTTGATACAAATTTG
CAAAGCACaaataatttgaatttgctgtaaCTTATGGTTTGAAATATATA
GTTTTAAC
Run BLAST on NCBI

transcript from alignment at sc0001757:24880..28672-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038007 ID=TCONS_00038007|Name=TCONS_00038007|organism=Clytia hemisphaerica|type=transcript|length=3793bp|location=Sequence derived from alignment at sc0001757:24880..28672- (Clytia hemisphaerica)
GTAATTTCTTGATGTTCCAAATGATTTGTCGCCTTCTTATTCCCGACATC
TTACTTTCATTTGATCATTTTTGATTGGTCAGCAATCGGTAATTTTGGAC
TAACCTTCTTAAAAATATATATGTATATTCTATTATTTGCGTACTCAGCC
TTTTAAAACAAAAGAAACAACAATTAACTCTCCTGCACTTACCACAGGAA
AAAAATGTTAAAAGTACAGGCCTGGGTTTGGTATGGGAAAATGGAACAAC
CTTAGCCATTTTCCAGGCCTCAGTTTTTTTCGGGGCCGGAAAAGACCAGT
TTCCAAGCCTGTGATTTTTGTTCAGGTTTAGGAAGTGGTCATTTGCGGCC
GCGAAAAAAAACAAGGCCTGGGATTTTAACATTTTTTCCGAATACGGCAC
GCTCCTCAAATCTATTGTTAGATCTGTTCCAACATATTTCATCTCTATAT
CATAAAGAATATTCCCTTTAATACTATAAATATTTGTTGCTCTCGATCTT
AACTATCGTTTTGGCATAATTTATATCTATAATTTGGTTTTCAGGTAGAA
AGAGAATGGGAAAATGCTCGGGAAGATTTTTCAACTCATGCTAAAAAGAC
GAGAATCAATACAAACAACATGCCAGCTATCGTGGAAGATATCAAAGCTG
CTGCACTTCCAGGTAACATATTTTTGGATATAATTGAGTTCCCAGTTTGA
ATATAACTGAGTTATAATCCAATTTGAAGCACTCAAGGAAGATGAACAGT
TCGTGTTGGTCTTTATGGATCTGAAGTCTCTAAAATCGAATTCAATCAAC
TCGATACCAGCAAGTTCTTTACAAAATACGTGTGTAATGGGCTCGAAGGG
TTCGATGAATTGAAAATTATTCCTGGAACATTAAAGGCAAAAGAATCTCT
TTTGGAAAGATTGGCCAAAATTGCATATGTAGATATTGAACAAAGTATCT
CCTTGACCATCACTGAAAGAATCATTCCGAGAATTCAATCTGAAATCCAA
AAGCACTTTTTTGATAAAGTCTTTTGGTCAGCGACTTTGAAAAAGCGTGG
AGGTATTAAACCGTTTAACAAACCCTCTTAAAAACTAAAACTATTCTCAG
AATTAGATCATATTTGAACCAAGAGCAGGCAGACTTAATATTTAATAGTT
TTATATTATCTACTTTTAAGTATTGCCCTCTCATTTGGATATTTTGCAGT
AAGATGACCCACAATCTTTTCAATGAACTCATTACAGAGCCCTTAGGGCT
AAACAAAATCTTCTCCATCTTAATTATGATGAGCTTCTGGTCAAAGCAAA
TTGAGTATCAATTCATACTCAAAATCTCCAACTCATGCTAGTGGAAAATT
GTAATAAGAGTGTCAACAATATTGGAAATAAACTAGGCTGGGACCATTTT
GAAATTATCCAGCGAGAAAGCAGGGAGTGATGAGGATATGTTACTTTCAT
TTTAGATAAATGTAAAAGAAGATCCGTTTACCGTATGCATAATTGGCAAG
TGCACCAATGCTATCAAAAAGAATTTGGTCCTACTTGAATGCACCAGAGG
AAGTAAGATCAATGAAAATGAAAAACTTAAAATATACCAAAGAAGTTTTC
CGTGGATCTACAATCAAACCAACTAAAGGTTACAAGGTAAAACTTTAAGG
AGTTACTTAAGATAACTTCCTTAAACAATTTATTACTACGCCTCTATACG
GTAAATTGGGAAACCTTCACTATCAGCCTATCAGTTCTACCGATTAAAGT
GTTGGAATCTAACCTATAGGGAGATCGATTTTAGAGACGGGTTTATTCAT
TGTAATTCATTCAGTGTGTTCAGTGTTATTTCATTTCGAAAATCTCAGTA
TTTTGGAAGAAGTACTTCTTTTTTTAAGCATCAAAGTCATTTATCATCTA
CAGTAAAACGTTTTTTACAGCAATGTTTTAAGAGCAGTGATTATTTTCTT
TTTTTGATTTTTGAAGCCGAAGATAAAAGATTACTCGCTGAACTGTACAT
GAAGATAAAACGATCTGAAGAAGAACTCGATCTGAAGAAGAACTCGATCT
GCTGAAACGAGACATGAATAGATATTTGTCGTTTTATCGAACAAAAATTA
CTGAACTGGAATATATCATAGTAAGTATCAGAATTTGTCTTGTGATAGGG
GATGTATATCTTCTAAATTAATCTTGTTCAAGGTTACTTTTATTAAAAAA
AGGGTAGTCTAACTTAAAGTCAAAGACGTGACTTTATGTCAATTGACGTC
AAATTCCAAGTAGAAAGTGATGGATTTATCGATCTTTGAAACGTCAAATT
ACTCGAGTTACATCAAGAATTCGGTGATATCCGCTGAAAAGTCTTCTATA
TATTTTTTTGAGAGCTTTCGAATGGTATAAGTGTTTAGGCTTTAGCGACT
TTGAATTTCACGTTTTCCTGGGGTTGGAAATTTAGCTTGGAAACCGCAAA
AATCGTTGCTATGACGTCACTAGGGCCGCCAAGTTTTTGGCACCACTTTT
AAATCATATCTTCTAATGGTGGATGACATCTGTTTGGTAGAATATTCACA
ATTTGAACCATTCGACCCTTATCGACTCTACTAATCGTATGTAATTCATT
TTTCCTCCTAATTTATATTTCCCCAGGAGACCGAATCGAATAATGCAGTT
GAAATTATTATGGCAAAAAGACGCTTGAGTTTTGCACAACATCAACTCGC
TGACGGTGTTCAGTATTTTTCCACAATTTTTAACGCCGGACATTCGATTC
CGATAGAATTTCGAATTAATTTTGAAGACGATGAAAATCAACAAGTGGAA
GAAGAAACTTTTGTTCCTCAAGAAGATTTGGTAATTCCGCTGCTGAGTCA
TGATATGTTGAAAGACCTGGCAGTAGAGGTCTCTAGCAATTTCAACATAG
ATGATTGTTTGATGAGTATTGATGGAAATGTTAGTAGCCCTTCGATCTCA
GTCAAGGAGCAATCGGTGGTCGAAACGGAAGCTCTGCATGTACCGTGATT
TCACTTTAACTGGTTATTATGAGACGAGCTCAAAGTGTCACTGATAAAGT
TTTAACTTTTGTCTTGATTTCAAATGAAATCTTATGCATTCATCAGAGAA
AGTAATGAAGATTTTTTTTTTTCGATTCCCACGCGAGCCCACCTAACGGT
GCATGTGTTTATATGGTACCGGTTGAACACTTCGATGAATTTATGAGAGA
AATCTTTAAGGAACAATATGTGAATATTGGAGTCTTCACATGTCAATAAC
TTCTTTATTTTTACATAATATAGTAAATTCATCCAAACTTTCTGGTTTAG
AACCTTTTGCAAATAATTATTTTGATCTTTTTGTGTGCGTATGACTTAAT
CCAGGTTTTTTAATCGATTTTTAGTAGAAAACAAGAATTTATTTAAATCT
TGATTTATTTCTGTGCTCATTTTCTTTTTCGTAAGGAAACTTTTATAAGC
ATAATTAAGCTGAAACTTAAATCGATCATGACTGCTAGGCATACCTTTAA
GCACAATTGCTAAAGTTTTGTGAAACGAAATGAAGAACACCGAAATTTGC
CCTCACAAACGGGTGTTGCCTTTAGGAAAAATGATGCAATCTAACATTTA
CATACCACAAGCATCCCCCAATAAGTTTTTCATGGTTTTTGTATTATGAA
TTTTTCAATTATTTTATACCCTGTACCGAAAATACAGTAATTTTCTTTTA
ACATAATGGTGGACATAATATTTGATACAAATTTGCAAAGCACAAATAAT
TTGAATTTGCTGTAACTTATGGTTTGAAATATATAGTTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022682XLOC_022682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038007-exon-sc0001757-1575043694:28585..28672TCONS_00038007-exon-sc0001757-1575043694:28585..28672Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1575043694:28011..28128TCONS_00038007-exon-sc0001757-1575043694:28011..28128Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1575043694:27037..27217TCONS_00038007-exon-sc0001757-1575043694:27037..27217Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1575043694:26553..26706TCONS_00038007-exon-sc0001757-1575043694:26553..26706Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1575043694:24880..26046TCONS_00038007-exon-sc0001757-1575043694:24880..26046Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1510915933:28585..28672TCONS_00038007-exon-sc0001757-1510915933:28585..28672Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1510915933:28011..28128TCONS_00038007-exon-sc0001757-1510915933:28011..28128Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1510915933:27037..27217TCONS_00038007-exon-sc0001757-1510915933:27037..27217Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1510915933:26553..26706TCONS_00038007-exon-sc0001757-1510915933:26553..26706Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1510915933:24880..26046TCONS_00038007-exon-sc0001757-1510915933:24880..26046Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1491911889:28585..28672TCONS_00038007-exon-sc0001757-1491911889:28585..28672Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1491911889:28011..28128TCONS_00038007-exon-sc0001757-1491911889:28011..28128Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1491911889:27037..27217TCONS_00038007-exon-sc0001757-1491911889:27037..27217Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1491911889:26553..26706TCONS_00038007-exon-sc0001757-1491911889:26553..26706Clytia hemisphaericaexon
TCONS_00038007-exon-sc0001757-1491911889:24880..26046TCONS_00038007-exon-sc0001757-1491911889:24880..26046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001757supercontigsc0001757:24880..28672 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.505789	0	0.311484	0.0262173	0.675259	0.538877	0.0966734	0.829557	0.949636	0.645815	0.243957	1.00856	1.44072	0	0.92256	0.892667	0.239214	1.4104	0.817079	1.38136	2.19714	1.01211	0.443824	0.341654	0	0.0226786	1.27665	0.492941	0.105071	0.457383
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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