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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037997 ID=TCONS_00037997|Name=TCONS_00037997|organism=Clytia hemisphaerica|type=transcript|length=1045bp
TCTGTTCCGTGATTGGTTATTGTCAAAGTGAAGAAGACAAGTCTACAATG
AAAGAAATGATGAAGCAAGTATTCGGTTCCTTCCTACCATCACTCGGCTT
GGGAATTGGTGGTAATCCGTTGGATAAGGAATCTCAATGTTCATTTTGCA
GTGACTgcatgaaaaatatcaaaaacacaCTTAAAAATGTTACATCTACT
GGAATGCCAGAGGAAGACATTACACCAATGTTGAAAGATGGATTTGCCAT
TTATTGCCGATCCATGAAAAAAGGAGATGTTGTTGAAAAAGTGTGCAAAC
GCATTTACAATGGCATGGAGAGCATCCAACGAACCATCATTTCAACTTCA
TCCACAAGACCAACACCATCAACAACAATTGAAACTCCAACGGAAGAAAA
TGTTGCTGCTGATGATGAGTTTGGCctttgcaaagattttgataTGTGCT
GAATGAACTTAAAAGATCTTTGTCTCTTAGAGACAAGTTTGTGGAGACAA
AGACACTtatatttgtaaaatcgctcgatttaatttttgttttataacta
taacttttttaccttttcattGTCCATTTTATCTTTGCAATATCCAAATA
AATAAGCTACTATTGTATAATGGTAGAGCTATGACGAAAATGCTGATAAA
TTTGATCCATGCAATAAACTCTGAATATAAATGTTTAACCGGAGaggttt
tttttccaatttaagGACGtacttgtttattttttaaatcaattgaAGGT
TACTTATTTTTTACCAAAACGGCTCCTGAAAATATATTAAACGATGTATG
ATAGATGGAGTTTTTGATATGTGGTATAGTTGTCTTGTAGTTTTGTAgtt
tatgaaatatttcttaATCTTCCTTTACATGAATGCAACGAAGCAAATGA
TATTTGTAGAATTTTTGTATCTTTAAATTTATCGtaatatatttgaaatc
agcaaaataaTTCCAAAAGTTTTGATACTTGTGTAAAATGTGGAATATAG
ATGTGGTAGTAGTACAATGACTCAAAATTGTACGCATAATtaacc Run BLAST on NCBI transcript from alignment at sc0001756:8298..12396- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037997 ID=TCONS_00037997|Name=TCONS_00037997|organism=Clytia hemisphaerica|type=transcript|length=4099bp|location=Sequence derived from alignment at sc0001756:8298..12396- (Clytia hemisphaerica)
TCTGTTCCGTGATTGGTTATTGTCAAAGTGAAGAAGACAAGTCTACAATG
AAAGAAATGATGAAGCAAGTATTCGGCAACATGGGTATGTCTCCTAACAC
ACCCCCTTCTCACAGACCCGGTGGGATTTTATCAGCCAGTTAGGGTAAAA
ATGGCCTTTTCCAGAAAAAAAACCGTATACCCCCTTTTGAGGTGGTCCAT
TTCCGTTCCAAGAGCGTAAGGTTTGATATATGGCAGAATTCCATAGGGAG
ATACAAAAATCTTTCAAAAATAACTGGAATTCCATGGGGTAGCCTTTTAA
ATCCTACTAAAATTCAGAATTACAGAGGGGTTTAAGCCTGAAATTGCCTG
GAATTCCAGGGGGTTGCAGCATTTCCAGCCACAAAATGATGGACTTCCTC
AACAGGGGGTATACGGTTTTTTTCTGGAAAAGCCCAATAACGGACCAATA
TTACCGATATTACCATGTTTTTTATGACCGAGGATTTTAATTCCATTATT
TTCTAGCCCGAAAATTCAGTGGGGATGGACAAAAAGTACAATATTTTAAA
GTGGGGATTTGCTTATCTGATTAATATCAGCGGGGACAAAAAATAGAGTA
TAGATTTCCACAGGGGACAATATTTTGGCTTATTTTTCCAGTGGGAAGGG
TTCCCAGTGGGTCTGTGAAAAGGGGTGTCGTACTAACCCTTCGACCACGA
AGGACGCCTATTTACACACAACATTCCCTTCTTAGAACAGCAGTGGGAAC
CCTTCCACTGAAAGAATTGGCCAAAATATCGTCCCTAGTAGAAATTATAC
TCCAATTTTTCCCCGCTCTTGACCACTTAATTAATAAGGCACAAACCAAG
CTTTTAAAGACTATGAGAATAAAATAGAAAATTTAGAAAATAATTATGCT
TTTGAGAAAAAGCAGAGCGCTCTAAAGGTTATCGAAATTGAGGGAGCTAT
AACTTTTGGTTTGAAAGACCGAAACAAAAATTATCCTCAGTAATAAAGAA
GATATATTCTTTGGCAGAATATTAATCAGTTATTCGATATTCTTTCTATA
ATTTAAACGAATCCTCAATTTCTATCGAGAGAAACCCTTCCTAAATTTTT
CTTATTATTCCAATCTCCCTGTAATTCGAACAAATAAGCCTTCCCATTTC
AGTTCCAGTTATCACAAGAGTAAAATGTATTATGAAACACATTTCTAGCT
TCTTTGTTATATTTATACATTTAACATTCGACAGGTTCCTTCCTACCATC
ACTCGGCTTGGGAATTGGTGGTAATCCGTTGGATAAGGAATCTCAATGTT
CATTTTGCAGTGACTGCATGAAAAATATCAAAAACACACTTAAAAATGTT
ACATCTACTGGTAAGACACTTTCGCTACCTTTGAAAAAAGTTTTTCATTG
AATTTTTGAAATCTTCGTAAAGTTAAGTAAAAACTCACTTAAGAGAACAT
ATTTTGACGGGGCAGCAGGCATTTTTGCTCTCATCTGCTTTATAACGACT
CGATCAAACATTGCTAACAGGAAAGAGACCTTTTCCAAAGGCAAACGCTT
TCGATCAGATCCCTTTCTATGGTGTTCAGTTTTCGCTTCATCGATAATAA
AAAAGTGAGGTCAAAATTCTACATTGCGGCAGCTTCTTTATGGATGATTA
TAAATTCACCTTCTTTCGCATCATATAAAATTCTGGTGTTCATCCGAAGA
CTTTTAAACCACGACGTTCTAAAAATAAAGCTGAAAGCGAGATTGGGCTA
TTCCAGAAAAAATTTGTACCTCCTATTTTGAGGAGATCTTTTTCCCCCTG
GATTTCCAATTTTTCAGGACCCCCTTGGATTTTTTTCTTCAATTTCTTTG
GACCACCTTAGATTTTCNAATAAAGCTGAAAGCGAGATTGGGCTATTCCA
GAAAAAATTTGTACCTCCTATGTTGAGGAGATCTTTTCCCCCAAGGATTT
CCAATTTTTCAGGACCCCCTTGGATTTTTTTCTTCAATTTCTTTGGACCC
TGGACGTCACACCTCCTCAACATAGGGGGTACAGACTATTTATGGAATAG
ACCATTTCTTTTCAGTATCGGCCACTTTCTAAAACATGTCTCAAAATATG
AAAATAAGTTATGAATAACACTTTAAACAAAAAGACTGAGCTTTTATGAT
TATTTTTTTAACATTGCTTTACACAGGAATGCCAGAGGAAGACATTACAC
CAATGTTGAAAGATGGATTTGCCATTTATTGCCGATCCATGAAAAAAGGA
GATGTTGTTGAAAAAGTGGTAAGAACAACAAATTCCTTATTTGAACGGTT
TTTCTCGGCTACACCTGATAGCCAATCTAGATTCGCTAATCTTAGTACAA
AGGGGAAAATACAAAACTGTTGGGGTACAGAGCCCCCCCTTCCTACAACC
GACGGGGACGTACAGCCGGAGTTTGAAAAGTGGACTCTGTCAGATCTGAA
TAAGTGGTAATTTTTCAGAAGGAAAAATTGAAAAATTTGTAAAGTGGCGA
AAATGACCAAAAATCGACCCCGTTGAAAATTAGTAAATTTGGGACCCTGT
CAGATATCTCTTAGAGTCTGAAAAAGGGACCCTGGTCAGCGGCACGTCCC
CGTGCCAAATTTATTAGTCTAAGTGCCTTCCCCAAGGGTAGTACAAGAAA
AATATTTCATTGTTGAAACTGAATAAAGGTGGTCCTAAATAACCTACGAT
TCCCAATGTAGAGATGAGAGGGGATGGCAATCCATAAAAACAGGACCTAA
TTTGGACCCCTCTAATTTTTTATTTACACTCCTCCTCAACATAAGGGATA
GAGACTATTTCTGAAAAAGTCCATTTCAGCTTTTCTTTTTTATTTTATTG
AATATTTCGATTTTGGAGGGATTCAGTGGCTTCCATGCTTTATTCTTAGC
CTTATTATGACATTTTTTAGTTTTCGGAAGTCCGAAGTCTCATGTTTAAA
GTCAGGGTTAAAATTCTTAGTTAAAGAAGTAAATTAGAGCACTTCAAAAT
CAGTTTTAGTTTCAAGATTTTGTAGGAAATTCCCCTTTTTTCTCAAATAT
AATTATACTTTAATTGTATTACAAGGGAAAATGTTGAGTTAAATTTTGAT
TCAAATGAGAATACTTTAGAATATAATTATAAATGCAACTTTTATTATGG
GCGCACAAAGTAGTCGGTTCCATCCCTGGTAGAGTCATACCAAAGACTCC
GGTATGTCCCTGTTAAAAGGTGAGAAATATGTCAGAAGGTCAAAAGGTTA
GAAAGATAAGTGAATAGCGATTCTAGGAAAAAGATTGGCCCCATTCCTTA
TCTTGGGATAGATAGCTATTTTACACTAAAATTTGTTATCGTTTCAGTGC
AAACGCATTTACAATGGCATGGAGAGCATCCAACGAACCATCATTTCAAC
TTCATCCACAAGACCAACACCATCAACAACAATTGAAACTCCAACGGAAG
AAAATGTTGCTGCTGATGATGAGTTTGGCCTTTGCAAAGATTTTGATATG
TGCTGAATGAACTTAAAAGATCTTTGTCTCTTAGAGACAAGTTTGTGGAG
ACAAAGACACTTATATTTGTAAAATCGCTCGATTTAATTTTTGTTTTATA
ACTATAACTTTTTTACCTTTTCATTGTCCATTTTATCTTTGCAATATCCA
AATAAATAAGCTACTATTGTATAATGGTAGAGCTATGACGAAAATGCTGA
TAAATTTGATCCATGCAATAAACTCTGAATATAAATGTTTAACCGGAGAG
GTTTTTTTTCCAATTTAAGGACGTACTTGTTTATTTTTTAAATCAATTGA
AGGTTACTTATTTTTTACCAAAACGGCTCCTGAAAATATATTAAACGATG
TATGATAGATGGAGTTTTTGATATGTGGTATAGTTGTCTTGTAGTTTTGT
AGTTTATGAAATATTTCTTAATCTTCCTTTACATGAATGCAACGAAGCAA
ATGATATTTGTAGAATTTTTGTATCTTTAAATTTATCGTAATATATTTGA
AATCAGCAAAATAATTCCAAAAGTTTTGATACTTGTGTAAAATGTGGAAT
ATAGATGTGGTAGTAGTACAATGACTCAAAATTGTACGCATAATTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037997-exon-sc0001756-1575043694:12322..12396 | TCONS_00037997-exon-sc0001756-1575043694:12322..12396 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1575043694:11037..11162 | TCONS_00037997-exon-sc0001756-1575043694:11037..11162 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1575043694:10129..10220 | TCONS_00037997-exon-sc0001756-1575043694:10129..10220 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1575043694:8298..9049 | TCONS_00037997-exon-sc0001756-1575043694:8298..9049 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1510915933:12322..12396 | TCONS_00037997-exon-sc0001756-1510915933:12322..12396 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1510915933:11037..11162 | TCONS_00037997-exon-sc0001756-1510915933:11037..11162 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1510915933:10129..10220 | TCONS_00037997-exon-sc0001756-1510915933:10129..10220 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1510915933:8298..9049 | TCONS_00037997-exon-sc0001756-1510915933:8298..9049 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1491911889:12322..12396 | TCONS_00037997-exon-sc0001756-1491911889:12322..12396 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1491911889:11037..11162 | TCONS_00037997-exon-sc0001756-1491911889:11037..11162 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1491911889:10129..10220 | TCONS_00037997-exon-sc0001756-1491911889:10129..10220 | Clytia hemisphaerica | exon |
| TCONS_00037997-exon-sc0001756-1491911889:8298..9049 | TCONS_00037997-exon-sc0001756-1491911889:8298..9049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001756 | supercontig | sc0001756:8298..12396 - |
Blast
The following BLAST results are available for this feature:
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