TCONS_00037974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037974
Unique NameTCONS_00037974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037974 ID=TCONS_00037974|Name=TCONS_00037974|organism=Clytia hemisphaerica|type=transcript|length=882bp
ttttagtgcaaaaaaattaaagtgaacTTTGTTTGCAAgacgaaaaatga
taaattaagCACCGAAGATAATGTAGAAAAAAGCTtctaaaatcaacaaa
acacgAGAAAAGTCAAGCTACCAGAAGActcaaacaaaacaaataacttA
AGGAATAACAATGGCAGAAATCAAAGCAGTACCACTTGGAGCAGGGCAAG
ATGTAGGCCGCAGTTGCATTGTGGTCACATTAGGTGGTAAAAACATTATG
TTGGATTGTGGGATGCATATGGGTTACCAAGACAACAGGAAATTCCCTGA
TTTCACTTACCTGGCGAAAAGTGGACCGTACACACCTTACATAGACTGTC
TTATCATCTCACATTTTCATTTGGATCACTGTGGTGCGCTACCTTATTTT
ACTGAGATGTGTGGTTACGATGGCCCTATCTACATGACGCACCCAACCAA
AGCCATATGTCCAATCCTATTGGAAGACTTCCGTAAGATTCAAGTGGAGC
GGAAAGGCGATTCACATTTTTTCACATCACAGAATATTAAAGATTGCATG
AAAAAAGTTGTACCTGTTAATTTACACCAAGTGGTGCAGGTTGACGACGA
GTTAGAAATCAAAGCATATTATGCTGGTCACGTGATCGGAGCAGCCATGT
TTCATTGTCGCGTTGGCGACCAATCATTTGTTTATACCGGTGATTACAAC
ATGACTCCGGACAGGCATTTAGGAGCCGCTTGGATCGATAAATGTCGACC
GGATCTTTTGATCACAGAGTCTACATATGCCACAACTATACGAGATTCGA
AAAGGTGTCGCGAAATGGATTTCCTAAAAAAAGTTCACGAAACCATTTTG
AAGGGCGGTAAGGtaagaaagcattttttgag
Run BLAST on NCBI

transcript from alignment at sc0001748:19800..22955-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037974 ID=TCONS_00037974|Name=TCONS_00037974|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at sc0001748:19800..22955- (Clytia hemisphaerica)
TTTTAGTGCAAAAAAATTAAAGTGAACTTTGTTTGCAAGACGAAAAATGA
TAAATTAAGCACCGAAGATAATGTAGAAAAAAGCTTCTAAAATCAACAAA
ACACGAGAAAAGTCAAGCTACCAGAAGACTCAAACAAAACAAATAACTTA
AGGAATAACAATGGCAGAAATCAAAGCAGTACCACTTGGAGCAGGGCAAG
ATGTAGGCCGCAGTTGCATTGTGGTCACATTAGGTGGTAAAAACATTATG
TTGGATTGTGGGATGCATATGGGTTACCAAGACAACAGGAAATTCCCTGA
TTTCACTTACCTGGCGAAAAGTGGACCGTACACACCTTACATAGACTGTC
TTATCATCTCACATTTTCATTTGGGTAAGTTTCATTCATTAAAAATTCTC
ATATCGTAATAATAGACGATACCGGCTTAACGTGAAAACTCAGATTTGAT
CCCCGAATATTGCCCACAATGCTTTGTGCGGAAAAAAATTCACCGTGAAC
TTTTTTCCGGGCAAAGCATTGTGGGCAATATTCGGGGATCAAATCTGAGT
TTTCACGTTAAGCCGATATCGTCTATTAGAACAAATGCCTCCTTTCTTAC
TCTGTGTATCTTACGTTTATCGCTTCGTAGTACAATCTGTGCACATCGCC
TGTTTGATAAAAAAATCACGTACGGACACTTCTGCGACGAGGTATGATTT
ATAAATAGCAACACTTCTCTCATCGTCTCCCCTCTCTCATCGTCTCCCCT
CTCTCATCGTCTCCCCTCTCTCACCAACACTCCATCGCAGCGGTCGGTTT
GAAAAATTTCAAATGAGAAAAGACAATGACAACAGACCCTCTAGGGCAAT
GAATATTGAAATTAGCCGTAGAATCGGGTTTGTGTACAGACAACCCCTTT
CTTTGACATCGGTATAGAAATTGTCGAATGTTTTCTGAAACCTCCTCTAG
AAACGACATTTCTCATTTCTCCAACAGATCACTGTGGTGCGCTACCTTAT
TTTACTGAGATGTGTGGTTACGATGGCCCTATCTACATGACGCACCCAAC
CAAAGCCATATGTCCAATCCTATTGGAAGACTTCCGTAAGATTCAAGTGG
AGCGGAAAGGCGATTCACATTTTTTCACATCACAGAATATTAAAGATTGC
ATGAAAAAAGTTGTACCTGTTAATTTACACCAAGTGGTGCAGGTTTGTTT
TAATCATTTACTCGAGTGAAGTAGGGGGGGGGGACCCTTAGGACCCGTGA
CATCTTTATACCACTCAACCAAACCTGGTCCATTTCAAAGAATGAAGAGG
GGGTGAGATTTGCTAAAAGGCCTAGGAAAGTTTTTTAGGACTCAAAAACT
GACGTCACAGGCAAAATCCCTTGACCCTTGAAATTTCACGAAATTTCAAA
GTCGCATAAAAGATGTCAGGCAACCTAAGGGTTTGCCCCCCCCCTACTAT
TGATTTCGTTTTTGCCAGAAACAAATACTTGTGGTGATAGGGCCGTTTGA
AAGTAATTTTTGAAACTGTGATGGCTTTTTTGCGAGTACCATTTTCAGAA
ATACTTCGATCAAAGGTGGTGGACATAGCTAAGTCTAATTATGAATGTCA
GTGCATGCAATGTTTTTCCAGATGTCGATTTTGTAGCTTCCCTAGAAAGA
CAGGTTTCTTAAAGTTACAGAAATTTCTCCGGTGGTCAGATGCTTTCCCT
ATGTAATATTCCTTTTTTTGTTGAAAGTACCCTCTCCAAACTTGATATTC
AGTTTATTATTTAGCAAATACAACTTGAATACCAACCTAGTAGGGCTTAG
AAATCTCTCTTAGAACCGTCAAAATCTAATAATTTTGGTTGACCACGCTC
ATATTTACACGATGTAAATTTATGTTTATTTATGATAATTTATGCACACT
AGGTTGACGACGAGTTAGAAATCAAAGCATATTATGCTGGTCACGTGATC
GGAGCAGCCATGTTTCATTGTCGCGTTGGCGACCAATCATTTGTTTATAC
CGGTATGTAGAGTTTTTGAATTTCAAAGTCTTAGTCGGTTCGTTTTTGGC
TTTTAAGTGGGCTTCCTAAAGGCCAATCTCCACTTAAGCGCGAAATGGGC
AACAGTTTTTTTCTTAATCCTTTTTGCCTGAAGAAAAGATTACGTCATAA
AAAAAGTTTCGCGCGAACAAAAAAAAATTGTAGGAAGTTCTACTTTTTTC
ATCCGTTACGTCAATTTCGACCAATGGAATAGCTTCATTTTTCAACCGAC
CAATGACCTTACAAAAACGTCAAAAAGTTTTCGCTCATGCTGCGCGAAAG
TGGAGACCGGCCTTAAGGCACTATCCACCTTCAAGTTTTTTTTCATACCG
CAGAAAGGAATTCTGCATCAAAGATCTTGTTTTTGAATAAGAGTGACACC
GGACTGATACAAGACATGTGAAACGGGAACACTTATTAAAAAATTAAAAC
CTTTAAAATATTTTAATATTTAAGGATGATCGGTATGATTGTTCAGTAAG
GCTAACTTTTAAAGTTTGCCGGAAGAGTTTTATCACTTCTTTTTGTGAAT
TAACCAGAGAAAATTATCTGCTTCAATATATGAAAATAAATACAGTTGAC
GATTTCTAATTCGACATTCTACTAATCGATACGCTCCATTATTCGATAAT
TATTGAAAGTCAAGCCAAAGCCATCAACAAGAAACTCTCATAAACGGCTC
TCCACTATTTGACACGCTCTCTTATACATTTCATTTCTTCAGGTGATTAC
AACATGACTCCGGACAGGCATTTAGGAGCCGCTTGGATCGATAAATGTCG
ACCGGATCTTTTGATCACAGAGTCTACATATGCCACAACTATACGAGATT
CGAAAAGGTGTCGCGAAATGGATTTCCTAAAAAAAGTTCACGAAACCATT
TTGAAGGGCGGTAAGGTAAGAATACATTTTTTTGAGGCGTGTTGAAACCG
TCATGAAAGGCGGTAAGGTAAAAAAAGCATTTTTCGAGGGCGTGCTGAAA
CCATCATGAAGGGCGATAAGGTAAGAAAGATTCTTTTTTTTTGGGGGGGG
CGTGTTGAAACCGTCATTGAGAGCGGTAAAGTAATAAAATAGTAATTTCC
GTGGGGCGTGTTGAAACTGTCATGGAAGGCGGTAAGGTAAGAAAGCATTT
TTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022655XLOC_022655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037974-exon-sc0001748-1575043694:22582..22955TCONS_00037974-exon-sc0001748-1575043694:22582..22955Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1575043694:21764..21978TCONS_00037974-exon-sc0001748-1575043694:21764..21978Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1575043694:20954..21053TCONS_00037974-exon-sc0001748-1575043694:20954..21053Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1575043694:20041..20213TCONS_00037974-exon-sc0001748-1575043694:20041..20213Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1575043694:19800..19819TCONS_00037974-exon-sc0001748-1575043694:19800..19819Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1510915933:22582..22955TCONS_00037974-exon-sc0001748-1510915933:22582..22955Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1510915933:21764..21978TCONS_00037974-exon-sc0001748-1510915933:21764..21978Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1510915933:20954..21053TCONS_00037974-exon-sc0001748-1510915933:20954..21053Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1510915933:20041..20213TCONS_00037974-exon-sc0001748-1510915933:20041..20213Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1510915933:19800..19819TCONS_00037974-exon-sc0001748-1510915933:19800..19819Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1491911889:22582..22955TCONS_00037974-exon-sc0001748-1491911889:22582..22955Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1491911889:21764..21978TCONS_00037974-exon-sc0001748-1491911889:21764..21978Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1491911889:20954..21053TCONS_00037974-exon-sc0001748-1491911889:20954..21053Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1491911889:20041..20213TCONS_00037974-exon-sc0001748-1491911889:20041..20213Clytia hemisphaericaexon
TCONS_00037974-exon-sc0001748-1491911889:19800..19819TCONS_00037974-exon-sc0001748-1491911889:19800..19819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001748supercontigsc0001748:19800..22955 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.1042	36.7142	14.1423	12.2187	25.0948	18.4595	34.0906	33.6283	20.841	21.6375	16.2084	22.9638	11.1143	12.0295	11.689	13.0699	22.2458	18.4887	2.87216	4.47642	11.2463	10.0652	29.7933	26.2686	21.5641	21.4033	7.46406	4.97295	14.6088	18.7747
Blast
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BLAST of TCONS_00037974 vs. Swiss-Prot (Human)
Match: INT11 (Integrator complex subunit 11 OS=Homo sapiens GN=INTS11 PE=1 SV=2)

HSP 1 Score: 393.66 bits (1010), Expect = 6.134e-133
Identity = 185/235 (78.72%), Postives = 215/235 (91.49%), Query Frame = 2 
Query:  161 MAEIKAVPLGAGQDVGRSCIVVTLGGKNIMLDCGMHMGYQDNRKFPDFTYLAKSGPYTPYIDCLIISHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDFRKIQVERKGDSHFFTSQNIKDCMKKXXXXXXXXXXXXDDELEIKAYYAGHVIGAAMFHCRVGDQSFVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCREMDFLKKVHETILKGGKV 865
            M EI+  PLGAGQDVGRSCI+V++ GKN+MLDCGMHMG+ D+R+FPDF+Y+ ++G  T ++DC+IISHFHLDHCGALPYF+EM GYDGPIYMTHPT+AICPILLED+RKI V++KG+++FFTSQ IKDCMKKVV V+LHQ VQVDDELEIKAYYAGHV+GAAMF  +VG +S VYTGDYNMTPDRHLGAAWIDKCRP+LLITESTYATTIRDSKRCRE DFLKKVHET+ +GGKV
Sbjct:    1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKV 235
The following BLAST results are available for this feature:
BLAST of TCONS_00037974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INT116.134e-13378.72Integrator complex subunit 11 OS=Homo sapiens GN=I... [more]
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