TCONS_00037938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037938
Unique NameTCONS_00037938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037938 ID=TCONS_00037938|Name=TCONS_00037938|organism=Clytia hemisphaerica|type=transcript|length=368bp
CACGAATCCTGCTCCGCTTGTAGCCACGAATCCTGCTCCGCTTGTAGCCA
CGAATCCTGCTCCGCTTGTAGCCACGAATCCTGCTCCGCTTATGGCCACG
AATCCTGCTCCGCTTGTAGCCACGAATCCTGCTCCGCTTGTAGCCACGAA
TCCTGCTCCGATTACGTCATTGAATCCTCCTTTGGTTGCGGCAACGAGTC
CTCCTCCTCCGGTTACGTCATTGAATCCACCTCTGGTTGCGGCAACGAAT
TCTCCTCCGGTTGCGTCAATGAATCCTTCTctggttacgtcaacgaatcc
ttctctggttacgtcaacgaatccttctccggttacgtcaacgaatcctt
ctccGGTTACGTCAACGA
Run BLAST on NCBI

protein sequence of TCONS_00037938-protein

>TCONS_00037938-protein ID=TCONS_00037938-protein|Name=TCONS_00037938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
VDVTGEGFVDVTGEGFVDVTREGFVDVTREGFIDATGGEFVAATRGGFND
VTGGGGLVAATKGGFNDVIGAGFVATSGAGFVATSGAGFVAISGAGFVAT
SGAGFVATSGAGFVATSGAGFV
Run BLAST on NCBI

transcript from alignment at sc0001739:42881..43248

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037938 ID=TCONS_00037938|Name=TCONS_00037938|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at sc0001739:42881..43248 (Clytia hemisphaerica)
TCGTTGACGTAACCggagaaggattcgttgacgtaaccggagaaggattc
gttgacgtaaccagagaaggattcgttgacgtaaccagAGAAGGATTCAT
TGACGCAACCGGAGGAGAATTCGTTGCCGCAACCAGAGGTGGATTCAATG
ACGTAACCGGAGGAGGAGGACTCGTTGCCGCAACCAAAGGAGGATTCAAT
GACGTAATCGGAGCAGGATTCGTGGCTACAAGCGGAGCAGGATTCGTGGC
TACAAGCGGAGCAGGATTCGTGGCCATAAGCGGAGCAGGATTCGTGGCTA
CAAGCGGAGCAGGATTCGTGGCTACAAGCGGAGCAGGATTCGTGGCTACA
AGCGGAGCAGGATTCGTG

Coding sequence (CDS) from alignment at sc0001739:42881..43248

>TCONS_00037938 ID=TCONS_00037938|Name=TCONS_00037938|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0001739:42881..43248 (Clytia hemisphaerica)
GTTGACGTAACCggagaaggattcgttgacgtaaccggagaaggattcgt
tgacgtaaccagagaaggattcgttgacgtaaccagAGAAGGATTCATTG
ACGCAACCGGAGGAGAATTCGTTGCCGCAACCAGAGGTGGATTCAATGAC
GTAACCGGAGGAGGAGGACTCGTTGCCGCAACCAAAGGAGGATTCAATGA
CGTAATCGGAGCAGGATTCGTGGCTACAAGCGGAGCAGGATTCGTGGCTA
CAAGCGGAGCAGGATTCGTGGCCATAAGCGGAGCAGGATTCGTGGCTACA
AGCGGAGCAGGATTCGTGGCTACAAGCGGAGCAGGATTCGTGGCTACAAG
CGGAGCAGGATTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022625XLOC_022625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037938-exon-sc0001739-1491911889:42881..43248TCONS_00037938-exon-sc0001739-1491911889:42881..43248Clytia hemisphaericaexon
TCONS_00037938-exon-sc0001739-1510915933:42881..43248TCONS_00037938-exon-sc0001739-1510915933:42881..43248Clytia hemisphaericaexon
TCONS_00037938-exon-sc0001739-1575043694:42881..43248TCONS_00037938-exon-sc0001739-1575043694:42881..43248Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037938-proteinTCONS_00037938-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001739supercontigsc0001739:42881..43248 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00283854	0.311469	0	0	4.17736	2.40728	4.66952	3.8936	1.84935	4.00419	1.98115	2.0493	5.45486	5.1736	5.83095	10.2677	6.63662	3.75753	5.89088	7.835	1.76827	4.01625	3.27747	2.28214	6.19402	3.24649	4.90393	5.96746	3.7405	7.28109
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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