TCONS_00037921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037921
Unique NameTCONS_00037921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037921 ID=TCONS_00037921|Name=TCONS_00037921|organism=Clytia hemisphaerica|type=transcript|length=893bp
aattggaGTTATTCATAACTCAGGTTAATTGAGATAGCGGTGTTATTGTC
TTCGGTCCCGTAACCTTTATGCAGCGCCAGTTCTATCTATATTACTTTTC
GTGTGAAATAGCGCCCCATTGGTACATTTCTACTTTGCGGTTTTGTGAAC
TTCCTCTTTCACTGTCTGTTATCTGAGCTGTTCAGACATAATTTCCAGAT
TGTTATCATTTTATATCTTGGAATATTTTTCTTTTCATTATGATAAACTT
CACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATCATTTGATTTCA
TCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATCGACAAAGAAAC
AACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATTGCAATTGACCC
ACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAGGGAGGCTTTGG
TTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAACTCATGAGCAG
CTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTTTCGAGCACGGC
TTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTACAACAGCCACAA
CTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGATGACTGCACCA
GTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTGGCCAACATGAT
TCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTACTTCTGGCGGCA
TTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATCCTGTTTTACCA
GCGCAACCACAACCACCTACCCCTCCTTCCTCAGACAATTTGCCAGCAAT
ACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGGTGAGTTTATT
Run BLAST on NCBI

transcript from alignment at sc0001736:42377..44095+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037921 ID=TCONS_00037921|Name=TCONS_00037921|organism=Clytia hemisphaerica|type=transcript|length=1719bp|location=Sequence derived from alignment at sc0001736:42377..44095+ (Clytia hemisphaerica)
aattggaGTTATTCATAACTCAGGTTAATTGAGATAGCGGTGTTATTGTC
TTCGGTCCCGTAACCTTTATGCAGCGCCAGTTCTATCTATATTACTTTTC
GTGTGAAATAGCGCCCCATTGGTACATTTCTACTTTGCGGTTTTGTGAAC
TTCCTCTTTCACTGTCTGTTATCTGAGCTGTTCAGACATAATTTCCAGAT
TGTTATCATTTTATATCTTGGAATATTTTTCTTTTCATTATGATAAACTT
CACAATCAAATGGCTTTTACTTTCAACTGTTTGGTTATCATTTGATTTCA
TCTCTTGTGTCAAGAGAAAAGCCACCGATCCAGTTGATCGACAAAGAAAC
AACAGTCCTGTCGTAACTGATGATCCTGCCATTATCATTGCAATTGACCC
ACAACAACGTTCCCTTGAACAGTGGAAAACATTTACCAGGGAGGCTTTGG
TTTTGTACGCCAATGCTAATAATATCCAGGCCACTGGAACTCATGAGCAG
CTTGCTTCTGCCCTTTTCGAACATTTTCAGTCGTCGCTTTCGAGCACGGC
TTCAAGTGCACCCACCACCAGCGGATCAAGTTCATCTACAACAGCCACAA
CTGCTTCATCAACATCTCAAACTACTTCTGTTACTCAGATGACTGCACCA
GTTGTCTCTCATGTAGCTGCACCTAATTCATCATCTTTGGCCAACATGAT
TCGGGAACAAGTTGAGGCAGCTGTGGCCAACCTCTTTACTTCTGGCGGAA
TTTCGCCAAGTTTGACGTCCTCCAGTCTCATTCAAAATCCTGTTTTACCA
GTGCAACCACAACCACCTACCCCTCCTTCCTCAGACAATTTGCCAGCAAT
ACCTTCGGCTGTTCTGGAAAGGATCAGGAAGGGTGAGTTTATTAATTTTG
ATCTTTTACTTCCCAATAATGTACCTTCAGAAACAATGGATTCCTATGCT
ATTTCGCTGGACGACTCCGATCCTTCTGCAACTTCCCCAAGAATCCTAAT
CCAAAATGGCAAGcgttcaaataaaaacaaagtcaCAGATTTTCATTCCT
GGTTTCTTGCTTGGTCACTATTTTTTCAggcttttattatttttagacCA
CATCTTGTGAGCCAGTTggcaaaatatcaaatttatattgCTCAATTTGC
ATCTAATTATAATTTTAAGGCTTGGTACAGTTATGACAAAGCCTTTAAGA
TGTTTTTAGCTAATAATCCTTTGGCTAGGTGGGATGTTTGCAATGAGGAT
ATTTACAATGTTCATCTTCGGGGGGCTTCAGGGAGGGCCCAGTGTTTTTC
ATGTGGTGCCAGGgatcatttttcttcttcttgccCGTCCAAACGCCCCA
GTCCCAGCGCGTCAAACCTCGCAACAACCTTTTGCATCTGCTCGCACTAG
ATTTCCATTTGCGCGCAGCCAGTCGGGGAATGGGGGGAATGGGAATGCGC
CCTTTCTCGACCCCCAGCTTGCAGCGTCTTCAGCCCAATCTGCAGAGTTT
TGTAGACAGTACAACTTTCGCCAGTNCCGGGAACAAGTTGAGGCAGCTGT
GGCCAACCTCTTTACTTCTGGCGGCATTTCGCCAAGTTTGACGTCCTCCA
GTCTCATTCAAAATCCTGTTTTACCAGCGCAACCACAACCACCTACCCCT
CCTTCCTCAGACAATTTGCCAGCAATACCTTCGGCTGTTCTGGAAAGGAT
CAGGAAGGGTGAGTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022613XLOC_022613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037921-exon-sc0001736-1491911889:42377..43092TCONS_00037921-exon-sc0001736-1491911889:42377..43092Clytia hemisphaericaexon
TCONS_00037921-exon-sc0001736-1510915933:42377..43092TCONS_00037921-exon-sc0001736-1510915933:42377..43092Clytia hemisphaericaexon
TCONS_00037921-exon-sc0001736-1575043694:42377..43092TCONS_00037921-exon-sc0001736-1575043694:42377..43092Clytia hemisphaericaexon
TCONS_00037921-exon-sc0001736-1491911889:43919..44095TCONS_00037921-exon-sc0001736-1491911889:43919..44095Clytia hemisphaericaexon
TCONS_00037921-exon-sc0001736-1510915933:43919..44095TCONS_00037921-exon-sc0001736-1510915933:43919..44095Clytia hemisphaericaexon
TCONS_00037921-exon-sc0001736-1575043694:43919..44095TCONS_00037921-exon-sc0001736-1575043694:43919..44095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001736supercontigsc0001736:42377..44095 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211525	0.0983602	0	0.0854214	11.9756	9.66467	5.58844	7.22967	3.75915	4.15723	2.16711	0.956643	0.353706	1.52004	0.120651	0	0.886986	0.100137	0.717917	1.37303	0	0	0	0.301515	0.670388	0.588233	0.141596	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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