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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037918 ID=TCONS_00037918|Name=TCONS_00037918|organism=Clytia hemisphaerica|type=transcript|length=797bp
GGGAAtccgaattttttcaaaatcaaaacaaaactGCACAAGAACATTAT
GCCACAAAGACATAACAAGATGTACAGATATTTGTATGCCATCAAACAAT
CTCGTTCATTGCAGTTGTCCCATCAATAAAACACTAACTGATGGATATAG
GTGTATACAAACGGCAAAGGCCGGACTTAACTGCAGCGATACGATGACGT
CTTTCATATGTTATGATGAGTCAAAATGTATCTCAAAAGCTTCAATTTGT
GATGGTTACTACGACTGCTTTGATGGTTCAGATGAACGAAATTGCACATC
ACAATCGACCATATTTCCATCAACATCATTGTCATTATCCTATCAGACAT
CTTTACCAACTTCCACTGTGTTCAAACCGTCCCTATCAACAATGGAATTC
TCTTTAAAAACAAGCTCTGTAATACATCAATCGACAGCCAACAAGGATAG
TTCAGCAACACTCCATTCTTTAAGTATCAGTCCTTCTACatcaacaatga
cgtcatcttctTCTTCGGTAACGGCAATAAGAACGACACCAGCGCCAAAA
GCGAGTGCTTGTGATTTAGATTTGGGTTTTGTTATTGATGAGTCCGGTTC
AATAAGCTTCGATGACTTTCGTAAATCAATCGACTTTGTTAGAAATATCA
CTCAACATTTCACAATTGCAACGGCCCGTACACGAGTATCTTTGATCACT
TATGACACTGATGCTGTTTTACATTTCAAATTCAACGATGCCGCTGGCTC
CGATCAAAGTACATTTCTTAACTACATTTCAACCATCAATGGACGAG Run BLAST on NCBI protein sequence of TCONS_00037918-protein >TCONS_00037918-protein ID=TCONS_00037918-protein|Name=TCONS_00037918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
GIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDGYR
CIQTAKAGLNCSDTMTSFICYDESKCISKASICDGYYDCFDGSDERNCTS
QSTIFPSTSLSLSYQTSLPTSTVFKPSLSTMEFSLKTSSVIHQSTANKDS
SATLHSLSISPSTSTMTSSSSSVTAIRTTPAPKASACDLDLGFVIDESGS
ISFDDFRKSIDFVRNITQHFTIATARTRVSLITYDTDAVLHFKFNDAAGS
DQSTFLNYISTINGR Run BLAST on NCBI transcript from alignment at sc0001736:26012..30414+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037918 ID=TCONS_00037918|Name=TCONS_00037918|organism=Clytia hemisphaerica|type=transcript|length=4403bp|location=Sequence derived from alignment at sc0001736:26012..30414+ (Clytia hemisphaerica)
GGGAAtccgaattttttcaaaatcaaaacaaaactgtATGTTCTGTCATA
AAACTTTAATTACCCTTTCACTCCCGGAgctttgcactttttgaaaaaag
aaattcaaacgTTTCCCCGAAACCAGCCTATTTTCCTCAAGATTTTGTGC
TCTTTCTAATGGTGGCTACGAAAGTTCCGGAAATGTCTTAGTTCCTGAGA
TACAGCCCGTTAAAGTTGGGACCCGGAAGCACCCGTTAGACGGGTTACTG
GGAGTAAAAGGGTTAATCTGGGATTTTCAGATTACACAAATTAATCCGTC
TTCCTGCTTTGGTTTATAATTTATTACTTAATACTTATAGTTCTTCGACT
TTGATTTTCGATTGAATAAGCTCTATATTTTAATGACacgttttgaaatt
aaatttgagTGCACCATCACAAAGATTTTctcttatttcaattttatttc
aattaagGCACAAGAACATTATGCCACAAAGACATAACAAGATGTACAGA
TATTTGTATGCCATCAAACAATCTCGTTCATTGCAGTTGTCCCATCAATA
AAACACTAACTGATGGATATAGGTAAGGTATAGATGTACATATATGTGCA
CGATATTGAAATAGGGGAATATATATAATCATTAAATGGAACACACTCGA
ACATTAACCCTTCAGTTCATTGGAGGGCCGGTAAAAAGCCATTTTCAGAC
CTTATAATACGTTATCTGCCATCTAAGGGTTAAAGAGccatttagaaaaa
ttgaaaacaccTCAAAAATCGTTGGAAGCACTTTCTAACATGCCCCTCTA
GCATTCTGAGCAGTTTGAAGCAGTTTTGAGATTTCAAAAAGTTCCCTTAA
CCCTTGAATGGCACACTGATTTTTGAACAtagcaattatttttaaaaatt
tttcttcataaatctCAAACTTCCAATGGTGATTGTGGCTCTAAAAATTG
GTTCTTAGACCAATTTTTTTGGCACCGTTGGAAAGCTCTCGACCTCAGCT
TTCTAAAACAACAAAAGAAGTTTGGCCGAAAACGCAGTGGTTTTGGGCTG
TGACCATTCGATTGAGGACCGGTAAAAACCCGGGGGCACTGACATTGACG
GCcaacggggacgtgccgctgaaGTTTGAAAAgtagaccctgtcagatat
gaatttttggcaaaattgggaccctgtcagaacgaaaaagtgaaattttt
tcccattttcgccCTGTAAAgtgtccaaaataatcaaaatctcagataca
catcttgataattagtaaatttggtaacctgtcagatatcttcagagcct
aaaaaaAGGACCCTGACCAGCGGTACGTCCCCCCAATTTTGCCTAAGTGC
CTCCCCCTGGGGTAAAAAGCCTTTTATAGACCGTATATATACATTATCTG
CCGTCTAAGGGTTAACTATTTTCTGCTGATACTTTAAAAAAGAAGAGTAG
AAATTAAATTCCGAAAATTGAATTCATATCATATTATGATAATTTTAGCC
CGTTGAGGTCATTTTTGGAAAGTCCGACCCCCTTGATTTTTTGGCCTGTT
TTTGAGATACCCCCTTGGATTATTGATTATTATCCCCTGGATTTGTAACG
AAATTTCAAGATCTGGTTTTTTTAGGGGTACCCTCTGGACGAAAATTCAG
ACCTCCACTAAGTGGTACATTTTTTTCTGAGATAGCCCAATTGACGAAGA
AAATGTGTGATTTTATAATTTTTTTTTATTTACACATGATTCCCAAATAT
CTTATAAAGGTGTATACAAACGGCAAAGGCCGGACTTAACTGCAGCGATA
CGATGACGTCTTTCATATGTTATGATGAGTCAAAATGTATCTCAAAAGCT
TCAATTTGTGATGGTTACTACGACTGCTTTGATGGTTCAGATGAACGAAA
TTGCAGTAAggaaaaagatttgtttttgtGTCAATCAACCCTAAGTCATG
ATATTCTGCCTGTTGGTGCTTTCaatgcagtgccgtagcaactggggggg
caagggggggctatgccccccccaataattttttcaaaaatggttatttt
gcaaaatgcaaagtttttcTTTTTTAATTTGTCATAATTGTCATTTATGT
GCATGTTTTGAGTGTATTTTTAAGcaatctagagctcaaattttcaaaat
ttcccccctcgggccaaaccatggttggccctcgcggtgtcactaaactt
aagccccctcaatatgaaaatgcttcctacggcactgcaaTGTAATCATT
TATCATTTATTCATCTGAAATTCTTGATTGTATTTGTGTATAAATGCGTT
GATCTAAGTGCTAGTGTATCTTACATACTATTGGAGTTTTAGAAAAAGGT
CACGctatagcccagtaatctatcatatcaaagtttctaaaatttgaacg
ccacAGCTGAAAGACTTATTCATCTTCAAAACTCTCacgctaagtttgac
aagcgaGGAAAGGACCTCGAGCCTCTCAAACACACCACAGCTGGCCGAAT
CAgactaaaataaatttttctttttacataaaaatatttttccgaaaatt
aagatttttctcACATAGAAGCTCGGTTAAACGGGCGTAAAATCGTAAAG
TTTCTGTGCTAATTCCACCGTTGGCAGAAAAAACGAGTGGTGTAAAACTA
GTGTTTTCTCGATCGAGTATGCGATTTACATACTTTCTTTTCTGCTCTTT
CTGCATTTGCTTCATTACACTAGCAAGATTTTGGTTTTGGTAACTTCTGG
CTGAAGGAGAAAAAACCCTCACGTCAAGAAATGCCTTCTGTTGCCTCTGC
CAAAATTCTCTTATTGTAACATCAGTGCGGAGTTCAGAGTCATGATCGAA
CCGTTTTTGTAGAATTGGTTCCTTCTCAACATCTTTGCTAACGATTGTAG
ATAGATTAGCCGATATGTTAACCAATTCATTGTTCCGCATGTGAATAAAA
CCGCCAACCTTGCACTGTAGTGAACCTAGAAGCAACCGTCTTAATCGGGG
TGACTCCGAGGAAGAGCACCCTCTATCATTTTGATTGGATCATTTTGTTA
TTGTGTATGGAATCcacccttttttctttttttgattgaatACTTTTACA
GGATAACGTAGACTACACCACTTACACCACTTGCGCATCGCAGACTGATT
TCTTTCCAGTAGCCTTTCAGTAGCGTTAACAGGGGGTAGAGGTCATTGTT
CTAATGATGGTCTTTAGGGGGCAAAAAAGGAAGGGGTAACAAATGGTAGT
TTTGGCACCACGATTCTTTTTTTACCTCACAAATATCAGTTTTTAGTCCT
AAAAAAGGAGAGATTGCTTCGCtggcgtagtttttacacaaagtTTCCCT
AATAAGAGGGCGCAgaattgccaaattttccaattttgccTGCCAGTGTA
GGTCAAACCATCACGCTACTGCTTCCTTTATCTCAAGGAAAAATCATTTA
GTCTTTCAATGATGGTGTCATTTTTGTCAGAAATGATGtcagaaaatgca
aaaactAAAAGAGAAATGCTTCAAAGTTTTGAAGGAGTTCTCTTTTTGCT
TTGATCTTTCTTTAACCTATATCCTTTAGTATTCTAGGGGCTTTCGATGc
gcaaacaaaacctttaaccggcgtttgcgacgacgggcaCCGTCTAGTTT
CTTTCTAATCTTAGACTAATACAGAAAGGTGTTCATAAATACAAATACTT
TTTTAGGTTAAATGTATAAACGTATTCCTACACAAATACAATCAAGGACT
GCAGACTGAAACGCACAAATTGGGTATGTATTGACAATACTTAATTCGTC
AAATCAACTCTATTTTCACTACAGCATCACAATCGACCATATTTCCATCA
ACATCATTGTCCTATCAGACATCTTTACCAACTTCCACTGTGTTCAAACC
GTCCCAATCAACAATGGAATNTCCATCAACATCATTGTCATTATCCTATC
AGACATCTTTACCAACTTCCACTGTGTTCAAACCGTCCCTATCAACAATG
GAATTCTCTTTAAAAACAAGCTCTGTAATACATCAATCGACAGCCAACAA
GGATAGTTCAGCAACACTCCATTCTTTAAGTATCAGTCCTTCTACatcaa
caatgacgtcatcttctTCTTCGGTAACGGCAATAAGAACGACACCAGCG
CCAAAAGCGAGTGCTTGTGATTTAGATTTGGGTTTTGTTATTGATGAGTC
CGGTTCAATAAGCTTCGATGACTTTCGTAAATCAATCGACTTTGTTAGAA
ATATCACTCAACATTTCACAATTGCAACGGCCCGTACACGAGTATCTTTG
ATCACTTATGACACTGATGCTGTTTTACATTTCAAATTCAACGATGCCGC
TGGCTCCGATCAAAGTACATTTCTTAACTACATTTCAACCATCAATGGAC
GAG Coding sequence (CDS) from alignment at sc0001736:26012..30414+ >TCONS_00037918 ID=TCONS_00037918|Name=TCONS_00037918|organism=Clytia hemisphaerica|type=CDS|length=3975bp|location=Sequence derived from alignment at sc0001736:26012..30414+ (Clytia hemisphaerica)
GGAAtccgaattttttcaaaatcaaaacaaaactGCACAAGAACATTATG
CCACAAAGACATAACAAGATGTACAGATATTTGTATGCCATCAAACAATC
TCGTTCATTGCAGTTGTCCCATCAATAAAACACTAACTGATGGATATAGG
TGTATACAAACGGCAAAGGCCGGACTTAACTGCAGCGATACGATGACGTC
TTTCATATGTTATGATGAGTCAAAATGTATCTCAAAAGCTTCAATTTGTG
ATGGTTACTACGACTGCTTTGATGGTTCAGATGAACGAAATTGCACATCA
CAATCGACCATATTTCCATCAACATCATTGTCATTATCCTATCAGACATC
TTTACCAACTTCCACTGTGTTCAAACCGTCCCTATCAACAATGGAATTCT
CTTTAAAAACAAGCTCTGTAATACATCAATCGACAGCCAACAAGGATAGT
TCAGCAACACTCCATTCTTTAAGTATCAGTCCTTCTACatcaacaatgac
gtcatcttctTCTTCGGTAACGGCAATAAGAACGACACCAGCGCCAAAAG
CGAGTGCTTGTGATTTAGATTTGGGTTTTGTTATTGATGAGTCCGGTTCA
ATAAGCTTCGATGACTTTCGTAAATCAATCGACTTTGTTAGAAATATCAC
TCAACATTTCACAATTGCAACGGCCCGTACACGAGTATCTTTGATCACTT
ATGACACTGATGCTGTTTTACATTTCAAATTCAACGATGCCGCTGGCTCC
GATCAAAGTACATTTCTTAACTACATTTCAACCATCAATGGACGAGGAAt
ccgaattttttcaaaatcaaaacaaaactGCACAAGAACATTATGCCACA
AAGACATAACAAGATGTACAGATATTTGTATGCCATCAAACAATCTCGTT
CATTGCAGTTGTCCCATCAATAAAACACTAACTGATGGATATAGGTGTAT
ACAAACGGCAAAGGCCGGACTTAACTGCAGCGATACGATGACGTCTTTCA
TATGTTATGATGAGTCAAAATGTATCTCAAAAGCTTCAATTTGTGATGGT
TACTACGACTGCTTTGATGGTTCAGATGAACGAAATTGCACATCACAATC
GACCATATTTCCATCAACATCATTGTCATTATCCTATCAGACATCTTTAC
CAACTTCCACTGTGTTCAAACCGTCCCTATCAACAATGGAATTCTCTTTA
AAAACAAGCTCTGTAATACATCAATCGACAGCCAACAAGGATAGTTCAGC
AACACTCCATTCTTTAAGTATCAGTCCTTCTACatcaacaatgacgtcat
cttctTCTTCGGTAACGGCAATAAGAACGACACCAGCGCCAAAAGCGAGT
GCTTGTGATTTAGATTTGGGTTTTGTTATTGATGAGTCCGGTTCAATAAG
CTTCGATGACTTTCGTAAATCAATCGACTTTGTTAGAAATATCACTCAAC
ATTTCACAATTGCAACGGCCCGTACACGAGTATCTTTGATCACTTATGAC
ACTGATGCTGTTTTACATTTCAAATTCAACGATGCCGCTGGCTCCGATCA
AAGTACATTTCTTAACTACATTTCAACCATCAATGGACGAGGAAtccgaa
ttttttcaaaatcaaaacaaaactGCACAAGAACATTATGCCACAAAGAC
ATAACAAGATGTACAGATATTTGTATGCCATCAAACAATCTCGTTCATTG
CAGTTGTCCCATCAATAAAACACTAACTGATGGATATAGGTGTATACAAA
CGGCAAAGGCCGGACTTAACTGCAGCGATACGATGACGTCTTTCATATGT
TATGATGAGTCAAAATGTATCTCAAAAGCTTCAATTTGTGATGGTTACTA
CGACTGCTTTGATGGTTCAGATGAACGAAATTGCACATCACAATCGACCA
TATTTCCATCAACATCATTGTCATTATCCTATCAGACATCTTTACCAACT
TCCACTGTGTTCAAACCGTCCCTATCAACAATGGAATTCTCTTTAAAAAC
AAGCTCTGTAATACATCAATCGACAGCCAACAAGGATAGTTCAGCAACAC
TCCATTCTTTAAGTATCAGTCCTTCTACatcaacaatgacgtcatcttct
TCTTCGGTAACGGCAATAAGAACGACACCAGCGCCAAAAGCGAGTGCTTG
TGATTTAGATTTGGGTTTTGTTATTGATGAGTCCGGTTCAATAAGCTTCG
ATGACTTTCGTAAATCAATCGACTTTGTTAGAAATATCACTCAACATTTC
ACAATTGCAACGGCCCGTACACGAGTATCTTTGATCACTTATGACACTGA
TGCTGTTTTACATTTCAAATTCAACGATGCCGCTGGCTCCGATCAAAGTA
CATTTCTTAACTACATTTCAACCATCAATGGACGAGGAAtccgaattttt
tcaaaatcaaaacaaaactGCACAAGAACATTATGCCACAAAGACATAAC
AAGATGTACAGATATTTGTATGCCATCAAACAATCTCGTTCATTGCAGTT
GTCCCATCAATAAAACACTAACTGATGGATATAGGTGTATACAAACGGCA
AAGGCCGGACTTAACTGCAGCGATACGATGACGTCTTTCATATGTTATGA
TGAGTCAAAATGTATCTCAAAAGCTTCAATTTGTGATGGTTACTACGACT
GCTTTGATGGTTCAGATGAACGAAATTGCACATCACAATCGACCATATTT
CCATCAACATCATTGTCATTATCCTATCAGACATCTTTACCAACTTCCAC
TGTGTTCAAACCGTCCCTATCAACAATGGAATTCTCTTTAAAAACAAGCT
CTGTAATACATCAATCGACAGCCAACAAGGATAGTTCAGCAACACTCCAT
TCTTTAAGTATCAGTCCTTCTACatcaacaatgacgtcatcttctTCTTC
GGTAACGGCAATAAGAACGACACCAGCGCCAAAAGCGAGTGCTTGTGATT
TAGATTTGGGTTTTGTTATTGATGAGTCCGGTTCAATAAGCTTCGATGAC
TTTCGTAAATCAATCGACTTTGTTAGAAATATCACTCAACATTTCACAAT
TGCAACGGCCCGTACACGAGTATCTTTGATCACTTATGACACTGATGCTG
TTTTACATTTCAAATTCAACGATGCCGCTGGCTCCGATCAAAGTACATTT
CTTAACTACATTTCAACCATCAATGGACGAGGAAtccgaattttttcaaa
atcaaaacaaaactGCACAAGAACATTATGCCACAAAGACATAACAAGAT
GTACAGATATTTGTATGCCATCAAACAATCTCGTTCATTGCAGTTGTCCC
ATCAATAAAACACTAACTGATGGATATAGGTGTATACAAACGGCAAAGGC
CGGACTTAACTGCAGCGATACGATGACGTCTTTCATATGTTATGATGAGT
CAAAATGTATCTCAAAAGCTTCAATTTGTGATGGTTACTACGACTGCTTT
GATGGTTCAGATGAACGAAATTGCACATCACAATCGACCATATTTCCATC
AACATCATTGTCATTATCCTATCAGACATCTTTACCAACTTCCACTGTGT
TCAAACCGTCCCTATCAACAATGGAATTCTCTTTAAAAACAAGCTCTGTA
ATACATCAATCGACAGCCAACAAGGATAGTTCAGCAACACTCCATTCTTT
AAGTATCAGTCCTTCTACatcaacaatgacgtcatcttctTCTTCGGTAA
CGGCAATAAGAACGACACCAGCGCCAAAAGCGAGTGCTTGTGATTTAGAT
TTGGGTTTTGTTATTGATGAGTCCGGTTCAATAAGCTTCGATGACTTTCG
TAAATCAATCGACTTTGTTAGAAATATCACTCAACATTTCACAATTGCAA
CGGCCCGTACACGAGTATCTTTGATCACTTATGACACTGATGCTGTTTTA
CATTTCAAATTCAACGATGCCGCTGGCTCCGATCAAAGTACATTTCTTAA
CTACATTTCAACCATCAATGGACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037918-exon-sc0001736-1491911889:26012..26046 | TCONS_00037918-exon-sc0001736-1491911889:26012..26046 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1510915933:26012..26046 | TCONS_00037918-exon-sc0001736-1510915933:26012..26046 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1575043694:26012..26046 | TCONS_00037918-exon-sc0001736-1575043694:26012..26046 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1491911889:26469..26583 | TCONS_00037918-exon-sc0001736-1491911889:26469..26583 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1510915933:26469..26583 | TCONS_00037918-exon-sc0001736-1510915933:26469..26583 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1575043694:26469..26583 | TCONS_00037918-exon-sc0001736-1575043694:26469..26583 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1491911889:27771..27916 | TCONS_00037918-exon-sc0001736-1491911889:27771..27916 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1510915933:27771..27916 | TCONS_00037918-exon-sc0001736-1510915933:27771..27916 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1575043694:27771..27916 | TCONS_00037918-exon-sc0001736-1575043694:27771..27916 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1491911889:29836..29863 | TCONS_00037918-exon-sc0001736-1491911889:29836..29863 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1510915933:29836..29863 | TCONS_00037918-exon-sc0001736-1510915933:29836..29863 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1575043694:29836..29863 | TCONS_00037918-exon-sc0001736-1575043694:29836..29863 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1491911889:29942..30414 | TCONS_00037918-exon-sc0001736-1491911889:29942..30414 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1510915933:29942..30414 | TCONS_00037918-exon-sc0001736-1510915933:29942..30414 | Clytia hemisphaerica | exon |
| TCONS_00037918-exon-sc0001736-1575043694:29942..30414 | TCONS_00037918-exon-sc0001736-1575043694:29942..30414 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001736 | supercontig | sc0001736:26012..30414 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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