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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00037918-protein ID=TCONS_00037918-protein|Name=TCONS_00037918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
GIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDGYR
CIQTAKAGLNCSDTMTSFICYDESKCISKASICDGYYDCFDGSDERNCTS
QSTIFPSTSLSLSYQTSLPTSTVFKPSLSTMEFSLKTSSVIHQSTANKDS
SATLHSLSISPSTSTMTSSSSSVTAIRTTPAPKASACDLDLGFVIDESGS
ISFDDFRKSIDFVRNITQHFTIATARTRVSLITYDTDAVLHFKFNDAAGS
DQSTFLNYISTINGR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SMART | SM00192 | LDLa_2 | coord: 60..100
e-value: 4.6E-6
score: 36.2 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PFAM | PF00057 | Ldl_recept_a | coord: 65..98
e-value: 4.6E-7
score: 29.9 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | PROSITE | PS50068 | LDLRA_2 | coord: 60..99
score: 12.488 |
| IPR002172 | Low-density lipoprotein (LDL) receptor class A repeat | SUPERFAMILY | 57424 | LDL receptor-like module | coord: 66..102 |
| IPR002035 | von Willebrand factor, type A | PFAM | PF00092 | VWA | coord: 190..262
e-value: 6.0E-12
score: 46.1 |
| IPR002035 | von Willebrand factor, type A | GENE3D | 3.40.50.410 | | coord: 176..265
e-value: 2.8E-12
score: 46.4 |
| IPR002035 | von Willebrand factor, type A | PROSITE | PS50234 | VWFA | coord: 190..265
score: 12.771 |
| IPR002035 | von Willebrand factor, type A | SUPERFAMILY | 53300 | vWA-like | coord: 174..263 |
| None | No IPR available | GENE3D | 4.10.1220.10 | | coord: 87..121
e-value: 7.7E-11
score: 41.3 |
| None | No IPR available | GENE3D | 4.10.400.10 | | coord: 54..86
e-value: 8.0E-9
score: 35.2 |
| None | No IPR available | CDD | cd01450 | vWFA_subfamily_ECM | coord: 189..246
e-value: 1.91716E-14
score: 66.9314 |
| None | No IPR available | CDD | cd00112 | LDLa | coord: 74..98
e-value: 1.64043E-6
score: 42.579 |
| IPR023415 | Low-density lipoprotein (LDL) receptor class A, conserved site | PROSITE | PS01209 | LDLRA_1 | coord: 76..98 |
Blast
The following BLAST results are available for this feature:
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