TCONS_00037911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037911
Unique NameTCONS_00037911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037911 ID=TCONS_00037911|Name=TCONS_00037911|organism=Clytia hemisphaerica|type=transcript|length=712bp
TCCAGCATTATGCAATAAAATtccaaatatcaaaacatttccaTCAAAAT
GTAACCAGATTGTGAGCAACAGTAATTCGACAGAGACTATCAGCCCAATC
TTTGCAAATATCAAATGCGAGATCAAAACTTGCACTCAAAATTATCATAC
GTGTGCACCAGATGGAACCAAGACTTATCTgtattttaaactctttttca
TTGGGATCCGAGATGTTTCATTTATTTCCATATTTGGTATATGTATTTAT
CTCATCTACGGTGATATGAAGAATCAGAAAGAGGCCTTAGAAGGACAATG
TCTCACAAATGctagaaaaacattaaaaatgctGGTTCTACTATCCGTCA
TCTTTGGCGTCTTGGTTTTACCCAAAGATATATTCCAATTCGCACATAAT
ATAAGTATTCTAGTTAAAAAAGAACTTAACAGAACAATATCGTTGAAGAT
CCATAGCTTCTTAAAAGTGCTACAATGCTCGAATTGTATTTCGAATGTAT
TTGTATACGCAAGACTTCACACCAAGTTCCGCGTACGAATGAAGGAATTG
ACTTCCAACATTTCAGAGAACATTTCAAATCAGTACAAAGGGATACCTCA
GTTAATTTCACATAACAATAAAGGTTTAGGCGAAACCTTGATGTAAAGGA
CTTATTAAAGAAATACCCCAACGGAAGAAATTCGGCGGATGATTGGAAAA
ATTTGTATGATG
Run BLAST on NCBI

protein sequence of TCONS_00037911-protein

>TCONS_00037911-protein ID=TCONS_00037911-protein|Name=TCONS_00037911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
PALCNKIPNIKTFPSKCNQIVSNSNSTETISPIFANIKCEIKTCTQNYHT
CAPDGTKTYLYFKLFFIGIRDVSFISIFGICIYLIYGDMKNQKEALEGQC
LTNARKTLKMLVLLSVIFGVLVLPKDIFQFAHNISILVKKELNRTISLKI
HSFLKVLQCSNCISNVFVYARLHTKFRVRMKELTSNISENISNQYKGIPQ
LISHNNKGLGETLM
Run BLAST on NCBI

transcript from alignment at sc0001734:40616..41327

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037911 ID=TCONS_00037911|Name=TCONS_00037911|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at sc0001734:40616..41327 (Clytia hemisphaerica)
CATCATACAAATTTTTCCAATCATCCGCCGAATTTCTTCCGTTGGGGTAT
TTCTTTAATAAGTCCTTTACATCAAGGTTTCGCCTAAACCTTTATTGTTA
TGTGAAATTAACTGAGGTATCCCTTTGTACTGATTTGAAATGTTCTCTGA
AATGTTGGAAGTCAATTCCTTCATTCGTACGCGGAACTTGGTGTGAAGTC
TTGCGTATACAAATACATTCGAAATACAATTCGAGCATTGTAGCACTTTT
AAGAAGCTATGGATCTTCAACGATATTGTTCTGTTAAGTTCTTTTTTAAC
TAGAATACTTATATTATGTGCGAATTGGAATATATCTTTGGGTAAAACCA
AGACGCCAAAGATGACGGATAGTAGAACCagcatttttaatgtttttcta
gCATTTGTGAGACATTGTCCTTCTAAGGCCTCTTTCTGATTCTTCATATC
ACCGTAGATGAGATAAATACATATACCAAATATGGAAATAAATGAAACAT
CTCGGATCCCAAtgaaaaagagtttaaaatacAGATAAGTCTTGGTTCCA
TCTGGTGCACACGTATGATAATTTTGAGTGCAAGTTTTGATCTCGCATTT
GATATTTGCAAAGATTGGGCTGATAGTCTCTGTCGAATTACTGTTGCTCA
CAATCTGGTTACATTTTGAtggaaatgttttgatatttggaATTTTATTG
CATAATGCTGGA

Coding sequence (CDS) from alignment at sc0001734:40616..41327

>TCONS_00037911 ID=TCONS_00037911|Name=TCONS_00037911|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0001734:40616..41327 (Clytia hemisphaerica)
TTACATCAAGGTTTCGCCTAAACCTTTATTGTTATGTGAAATTAACTGAG
GTATCCCTTTGTACTGATTTGAAATGTTCTCTGAAATGTTGGAAGTCAAT
TCCTTCATTCGTACGCGGAACTTGGTGTGAAGTCTTGCGTATACAAATAC
ATTCGAAATACAATTCGAGCATTGTAGCACTTTTAAGAAGCTATGGATCT
TCAACGATATTGTTCTGTTAAGTTCTTTTTTAACTAGAATACTTATATTA
TGTGCGAATTGGAATATATCTTTGGGTAAAACCAAGACGCCAAAGATGAC
GGATAGTAGAACCagcatttttaatgtttttctagCATTTGTGAGACATT
GTCCTTCTAAGGCCTCTTTCTGATTCTTCATATCACCGTAGATGAGATAA
ATACATATACCAAATATGGAAATAAATGAAACATCTCGGATCCCAAtgaa
aaagagtttaaaatacAGATAAGTCTTGGTTCCATCTGGTGCACACGTAT
GATAATTTTGAGTGCAAGTTTTGATCTCGCATTTGATATTTGCAAAGATT
GGGCTGATAGTCTCTGTCGAATTACTGTTGCTCACAATCTGGTTACATTT
TGAtggaaatgttttgatatttggaATTTTATTGCATAATGCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022604XLOC_022604Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037911-proteinTCONS_00037911-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037911-exon-sc0001734-1491911889:40616..41327TCONS_00037911-exon-sc0001734-1491911889:40616..41327Clytia hemisphaericaexon
TCONS_00037911-exon-sc0001734-1510915933:40616..41327TCONS_00037911-exon-sc0001734-1510915933:40616..41327Clytia hemisphaericaexon
TCONS_00037911-exon-sc0001734-1575043694:40616..41327TCONS_00037911-exon-sc0001734-1575043694:40616..41327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001734supercontigsc0001734:40616..41327 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0705323	0	0.0798603	0	1.7121	1.12744	0.997484	1.10362	0.416053	0.662592	1.71501	0.610663	2.81453	1.94861	0.760961	1.16047	0.370638	0.488433	5.6233	5.72747	0.681946	0.498944	0.646967	0.22057	0.0757274	0.878604	0.290141	0.103216	0.156571	0.159521
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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