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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037908 ID=TCONS_00037908|Name=TCONS_00037908|organism=Clytia hemisphaerica|type=transcript|length=804bp
AAAGTGGGATGGGTTTCGAACAACCATGGTGGCGGTTTTGCACGCATTGC
TTTAGTACCTTGGAATGAACGAAAAAATGCTCAAAGTTATAAAAACAATG
TCATGAAGTTCGCTTGTTATGGACATGATGAGAGACCTGGCAAATACAGA
AATGGGGATTGCTTACATCCGTGTAATGCACGCAAAGGTTGCGAATATCA
GTCAGACCCATCTGACGTATAACGTTTCGACACAACCATTGGAATTCCAA
CAAATTTAAGAGATGGTTTCTACTCTCTACAAGTCTCAATGGTTGTCGGT
AACGGAGGTGTTTACAATAGTTGTGCTAAACTGAGAGTATCAGGTGGAAA
CCAGTCATTTCGCTGTCGCTCTACCAAAGCACCAGTGACGTACCGATGTG
TTGAAGCTCACAGCCAATCAGATCTTTCTACATTAAGACAAgGGACAAAA
CGCGGTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGA
TTATATGACAGATGTACCAATCAACGTTGATTGCGACCCACGTGCTTCTT
GCGATCAATCAGTAGACAAAGGTTCATGCAATAGACAGTTTCCATCCATG
AAAAGCATCGTGGATGCTGGAAGTAACCCAAGACAACCGTTTTGTCCTGC
ATACAAAGTCCTACCACAGATATGAAAGTCATCAACATGGAAGAGATAGC
TTGTTGAGGAATTGATCAAATTGGAACCCTTATTGTAAAATTGGAAGACT
AAAGAtttaatgaaatcaaaattgcCATCGATGGATGTGCCTCCCGAATT
GAAT Run BLAST on NCBI transcript from alignment at sc0001734:26988..35644- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037908 ID=TCONS_00037908|Name=TCONS_00037908|organism=Clytia hemisphaerica|type=transcript|length=8657bp|location=Sequence derived from alignment at sc0001734:26988..35644- (Clytia hemisphaerica)
AAAGTGGGATGGGTTTCGAACAACCATGGTGGCGGTTTTGCACGCATTGC
TTTAGTACCTTGGAATGAACGAAAAAATGCTCAAAGTTATAAAAACAATG
TCATGAAGTTCGCTTGTTATGGACATGATGAGAGACCTGGCAAATACAGA
AATGGGGATTGCTTACATCCGTGTAATGCACGCAAAGGTTGCGAATATCA
GTCAGGTATGGATAGAATCAAGTTGTCAATGCAAAGTTTTTAGTGTCAGA
AAAAGCTCTAAAATTTACACACCAAACTCGTCAACTTCCAAGGCGGAAAA
AGCGTCCCTTCCATCGAGATGAAAATTCCTGTGAGACGAAAAAAAGAAAG
CTTGAATTCATAAGAGATAGAGAAAATCTAGTGAAAGCCAAAACTATGGA
GCTCTACTTTTTAAGTCAGTCACAGTCTATCAAGGGTGACTTTTGAAGGC
TCCCTTTTTTGATAGCCTTCTAAGACAATTGTGACTCTCCTTCGCATAAG
ATAGTTCTCCTTCCCCTTGTTTTTCTTTCACTTTAAATACTCAACAATCA
ACTAAAAAGATAGTTATCGTTCCAACAACTAAATAAAAATATATTTTTTT
TGACACAGACCCATCTGACGTATAACGTTTCGACACAACCATTGGAATTC
CAACAAATTTAAGAGATGGTTTCTACTCTCTACAAGTCTCAATGGTTGTC
GGTAACGGAGGTGTTTACAATAGTTGTGCTAAACTGAGAGTATCAGGTGG
AAACCAGTCATTTCGCTGTCGCTCTACCAAAGCACCAGTGACGTACCGAT
GTGTTGAAGCTCACAGCCAATCAGATCTTTCTACATTAAGACAAGGTAAG
AAAAAAGAAAGAAAGGAGAAAAATAGAACATTATTTTGTACTCACTTTCT
AAAAGGTATTTTACTATTTTCCTGAAACCACTGAAATTATTATTAAATTC
TTACGACCAAAAAGTACTCCTTATTATAAATATTTGGGACAATAAGCTCT
TTTCTATTCTTCCANTCCGTCACCTCGCAAACCTAGTACCCCCCCCGGGT
TTTGTACTCACTTTCTAAAAGTTATTTTACTATTTTCCTGAAACCGCTAA
AATTATTATTAAACTCTTACGACCAAAAAGTACTCCTTACTATAAATATT
TGGGACAATAAGCTCTTTTCTATTCTTCCAGGGACAAAACGCGGTAATTT
TTGTTATGGTCTTGACGGTAAAGTTGGTACAGTGGATGATTATATGACAG
ATGTACCAATCAACGTCGACTGTGATCCGCGTGCTTCATGCGATCAATCA
GTAGATAAAGGTTCATGCAATCGACAGTTTCCATCTATGAAAAGCATCGT
GGTAAGTGTTAAGACATGATTTTTCTAAACGTCGAGTAAAGCTATGATTG
GCTGAGACAAGAAAAGATTACCTCATACACTCATTTTATTTTATAAGCAT
AACGTTTATAAGCATACTGAAGCTCAAATTTCCAGAAAAATTAAGCATAT
GTTAAGCATACCTTGAGGCTCAGCCAAAGAAATTTTTAGAATCATAATTT
CCAAAACTTCAGAAAATAACAGAAGAAATCATAAGGTAAACATTCGAAAA
CAATAGAATGTCTTCATTTCTCTCAAGATTAAAGATAGGGGGAAATGCGC
GAAAATTTTTACCACCCCTTCATAATTTTACCAAGCATAGGGTTAAGTAT
AGTCGAGGCTCAAAATTGAGCTTTACTTAAGCATAGTGAGCTTCAGCCGA
AATTTACCGTATGCTTATAAAACAAAATGAGTGTACTTTGGACATGTTGA
TAAAAATAAGTTTAGATAAGCATTTTTTAGTCAATCAGAGCTTTCTTCGA
CGTGTTTTCGTGACTTTTTTACATGAATCTGGCAATAGGAAATTTGTATA
ATTAATCAAACACTTTCGCAAAACCCCTGTAATCTTTTCTAAAGTGCTTA
AAAGTTTCACCAAGTTTGTTTGCTTTTAGAGAGGACATTGGATGAGTCCC
CAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATAAGTCCCTCATAGGG
GGAATTCCAGAAGAAAGTGGAAAATTTTGAGAACATTTTGGAATTTCAGT
CCCATTCAGGGTCACTTTTTTCAAATAAACGAGTCCCACGTAGGGTCCAT
TTTTCGAATTTCAGTGGCACATTCCCGTCGGGTGGCAAGGGTAATTACTG
CTTTATAGGGTAACCGATTTACTCAACTTTGTATCTCTGTTGCACGTTCT
TTGATTTAGGAATAAGTGTATAAAAAAATAACGCATCAGAACATTTTAAG
GATTTACAGGGTCTAGAACAAAATATTCATGCACAAAATGCCGAAAAAAG
AACATTTTGAGTACACTGTAAAACTTAAAACCAAAGGATTAAGAACACTG
GGAGGGTTTGAAGTATATTTGATGTTCTTATAAAGAAGAAGTTATATAGT
CCAGTTGATGACTTTTCAATTTTCTTTTTTCTCAGGATGCTGGAAGTAAC
CCAAGACAACCGTTTTGTCCTGCATACAGAGTCCTACCACAGATATAAAA
GTCATCAATATGGAAGAGATAGCTTGTTGAGGAATTGATCAAATTGGAAC
ACTTATTGTAAAATTGGAAGACTAAAGATTTAATGAAATCAAAATTGCGA
TCGATGGATGTGCCTCCCGAATTGGATATATCAATAATTATTTGATTCCA
AAAATTAAATTTGGACTAATATCTTAAAGAGTGAATTTAACAGAATTTAA
CCAGAAATAGATTTGTCATTCTTTTGTCAATTTTTACAAGAGGGTCATTT
CAAAACAACAAAACTTTTTAGTGCATAATCCTATCTTTATAATTGTAGGG
GGCCAAACCTTTTGAATTAAACAAAAATGATTGTCATCATCGGATGGAGC
ATAAAATTCTGAACAAAAAAGTATACTACACTAAGTTTTATACTCAAACA
CACAAAAAGATAGGACGATTGAAAATTCGAAATCCTGTAGAATTTGTTAC
ATTTTAGACAAAATTTGACGTCAAACTGACAGAATTTTGAGCTTCGAAAG
CCTGTGTTTCTTTATATGTTTGAGTAGTTTGCTGTAGTATATTTTTTTTG
CTCAGAATTTCATGCTCTATTCGATGGTATTGATCATTTTTGTTGAATTC
AACTTTCGAAAATTGTCAATTTTTGCCTATTTTGGGGGTTAGAAATCTTG
CTTACAACGTCAGTTTTTTGGCCATAAAAACTTTTGCAAGGCCTAATTTG
CAGGCCCTCTCTCAGAAAAATTTCATAATCCTATCTACTTTCGAACCTAT
CACAGGAAACTTTGAGTTTGAAGACTCACAGGGGATAGAGGGGAATCTCT
GGGAAGCTTCCCATACAAATGTTGGATTGAAAGTAAAATATAGTGACCTA
GTATTGTCATTACCCAACTAGCAAAAAATTCAAGTTGATGGCATTCATGA
ATTATAACNAACCTAGTATTGCCATTACCCAACTAGCAAAAAATTCAAGT
TGATGGCATTCATGAATTATAACTAAAACTTTAGCCCTAAATCTAGACCA
AAAGAGCAAATTTAGAACGGTCTGTAAAACGCTGTGTTGGGCAGGTGGTA
AAAACTTGCCATGTGCCATTTTAAGTCACATGACTGAAGTGCATATATGT
AATAAAAGGACTGAAAAGTTTTTCGGAATTTCTTTTGAATACCACCATCC
CAAGTACTTTGGAGAATTTCTTAAAAAGTAATTTTTTGTACGGACTGAAT
AAAAACTTTTCTCCATAAGCTCGTGCTACGATCGCTTACTTTTTTGATCG
AAGCCTCGCCATTGTTGGTAATCTCCGAGCANGTTTTCCCCATAAGCTCG
TGCTACGATCGCTTACTTTTGATCGAAGCCTCGCCATTGTTGGTAATCTC
CGAGCAAATCCTGATACTCTGTGCATGAAACGTATTCACTCTAAAGGCTA
TGGCTTCGCAAGAGAATCTGCCCAGGTTGACATACTGCTTTGTTCTTTTT
TATCAAACTTGGGATGAATATTGAGTGAGCTTTTGAGCGCGTTGTGATTT
GCTAAGGCAAAACAATTGCACCAAAATAAAACATTAATCATAAACATATA
GAGCGCAGTGGCTTTCGCTTTTACTTTCGTTTTCAAGCGATAAGTAACGC
GGTTTTTACTGTTTACCCAGGTCCAATAATTCACCATATTCCTTTAGAGC
AGGGCGTAACGTGAACAGATTATGATATGTTATGTTATACACTTATATGT
ATCGCTGAAAAGAAAATTTGCCCAGACCTGATCTAACGTTTAAAGAAGTT
GAAGAACAATCAACTTTTTCTTAAAGCGCGTGCTTATTTTTATGACGTAA
TCTCCCCCCTCCCAGCAAAAAATGATTGAAGCAAAAAAGAACCTATGACA
GTGCAAGCTTCTGGAAGCCAACATTAAACCAGCCAAAACTATCATACGAC
TAAGGGGGTATTAATCAAAAGTAATTAAATCAGAAAATCAAGNACCAGCC
AAAACTATCATACAACTAAGGGGGTATTAATCAAAAGTAATTAAATCAGA
AAATCAAGTAGCCAAATAATGACGTAAACTTGGTTTACCACAAATTGGAA
AAAGAGAAAACGTCATTACCTCTTTGCAAATGCATCCCGAAAGCCAAAAC
CGTCTTTGACCGGATCGTGTGTCGGCTAAACGGACGGATGTGTGGAGTTT
GGAGTGATGGTACTTTTGGACGCAATGACAAAGACAACTGTATCCTGAAA
AATGGGTATAAAAAGAGCTGGAAAAATATTTAAATTAAGAAGCAAAGTAA
AAAGAAAGATTGGAGTGATATTAACCAGCCAATAAAAAACAAGCAGAATC
AACATGAAGATGACTTTGAGTTNGTAAGAAGCAAATTACAAAGAAACATT
TGAGTGATATTAACCAGCCAATGAAAAACTAGCAGAATCAACATGAAGAT
GACTTGGAGTTTCATCACGTTATTGGTTTTATGTTTACCAGAACTGATTT
TCGCTCATTCGTGGATGACATGCCCACCGTAAGTAGATTTGAAATTTGAA
CGTTGGAGTAAACAAAATATGAAAAGGCCGTATTCTCAAAAGTGTGCATT
TCAAGATAACAGTCGTACAGACCCTAAGCCTTTTTGCTGACCCTAAATAA
GTTATATGATCAAACTCTTTGAAATAATAAACATAGATCGATATTCAACG
TGAATAGCTCAGTAATCTAGAACAGTTTTATATTGTTTTAACGGGGTCTA
CAGCCAGCCGGATCGGCTATCTACGAGCTCGACGAAACTTTGTAGGAAGC
GGGGATTCGAACCCTTGGTTCAGGAGCTGAAAACTTGACCATTTGGCCAT
TAACCCCATATTATGGAATCTCAAGTAACTTTTTCATTTAAATGTGCATT
CAGGTCTTTCAATCCAAGACTGGGACGAGGAGGGATCATTGGAGGCGCAC
AATGTGAAGGGGAATGGGGCACAAGTAAGTAAAATCTGTTAAACTCCTGA
TCTTTTTTTCAATAGCCGAGTAGAAATCGCTGCCATCAAGGCAAAAGGTC
CAATCTCAAAATTAGTGTCTGAGAAAACTGAGAATTTTTCTGTTTGGCTA
ACCTTAAATCTTGAGCTTGGCCCATTTTTCATATTGAGGGGGATCCCATC
TACATGAAAAAGGGTCAATCTCAAAATTTAAAGTTAGCAAAACAGAAGAA
ATTCTTAGTTTCCTCAGCCACTAATTTTAAGATTGGTGATAGTAAAATAT
TCTTTATTTCAGCTGAAAAAAAGCTGATTATAAATTAGTTTTAGACGTTA
GATTACCCTGGCTTACCTGCATATTGATTTTTCGATGTTGGGATCAAAAC
TCAATGAAATGAATTTCTTGATTTCATTCTAGTTCCTGTTACCGAAGTTG
AAGCGGGCGATCGATTGAAAGTGGGATGGGTTTCGAACAACCATGGTGGT
GGTTTTGCACGCATTGCTTTAGTACCTTGGAATGAACGAAAAAATGCTCA
AAGTTATAAAAACAATGTCATGAAATTCGCATGTTATGGACATGATGAGA
GACCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGCAATGGAAGA
CCTGGATGCGAATATCAATCTGGTATGGAACTTAAAACTCTCAAATATCT
TTGCAACTTTGCAGGTTTACCCTTCGGTCACACTATAGTCCGTATAAAAA
CCCTTTGACTGGGAAATCATCATTTTACACCCCGAAATTTGGAAAACATG
CTTGGGAAATCCCCATTTTACATCCCAAAATTGGGAAAACCCATGCCTGG
GAAATTGTCATTTTACAACCCGAAATTTGGAAAACCCAAGCCAGGGAAAT
AACCACTTTCCAGGCCTGTAGCTGTTTCATTTTTCCAGGGCAAATCCAAT
CCCGAAAATTGTCATTTCCCAGGCCAGGAGATTTAAGATTTTCCTTGACT
GTTATAACCTTTTGTTCCAGTTTTTGATCAGGTTACAAAATGCTCCCCTA
TTCGTCAAACTTGCGGAATTACTTTCATTTTAATGTTCTGCGATTCAGAA
ACTTGAACCTCTATGACTCGAAAGAATACTGGTTCCGCACATTTTTGTTG
TCCAAGTCAGGAGACCTGATAGTATTTCAACCCACAGAATCTATCACTTT
CAACCAATAATATTGCTCATGAAATATTATTAACTTTTAGACCCATCTGA
TTTTGAGCGTTACGATACAACCATCGGAATTCCAACAAACTTGAAAGATG
GTTTCTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTAC
AATAGTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTCATTCACGTG
CAGCCCCAGCAAGACACCAGTTTCTTACAGTTGTCGCACTGCACTGAGCA
AAGATATCTCGCCCATAAAATCAGGTAAAGCAACGATTTCAGGTCATGTT
CTCTTTGGCTCTAACGGAGAAGAATTTTTAGGAAACTTCCTTTTATTCAA
ACCGCCCCCTTATATTTGGACCGCCCCGTTATTATTCGGACCACCTCTTT
TACTATTCGGGACCTTAGAGTAAGAAACCTCCGCCAGCGCATTACGTGTT
TAAAAAGGTTTAATAAAGAATAAAAACGTGTTATTAATATCAAGACTTTG
AATTGGAAATCACCTTTTCAAAAATTACGTCATGGACAACGCTTACCTCG
TACTTGTTTTCAAAATATTGCTATAGTTTCAGAATCAGGTAGTGGTCGCA
CTCAAATAATTCATGAGAAGGTAAAAAATACATTTTTAGTCCTTCAAAAT
TAGGTGAATGAATCACCTCACTTTTTTGCCGAGGAAGGCTATTTTGAAAA
TTCTCTTAAAACTTATTTTNAATTATTATTAAACTCTTACGACCAAAAAG
TACTCCTTACTATAAATATTTGGGACAATAAGCTCTTTTCTATTCTTCCA
GGGACAAAACGCGGTAATTTTTGTTATGGTCTTGACGGTAAAGTTGGTAC
AGTGGATGATTATATGACAGATGTACCAATCAACGTTGATTGCGACCCAC
GTGCTTCTTGCGATCAATCAGTAGACAAAGGTTCATGCAATAGACAGTTT
CCATCCATGAAAAGCATCGTGGTAAGTGTTAAGACATGATTTTTCTAAAC
TTCGAGTAAAGCTCTGATTGGCTGAGACAAGAAAAGATTACCTCATACTT
TGGACATGTTGATAAAAATAAGTTTAGGTGAGCATTTTTTAACCAATCAG
AGCTTTCCTCGACGTGTTTTCGTGTGACTTTTTTACATGAATCTGCTAAT
AGGAAATTTGTATAATTAATCAAACACTTTCGCAAAACCCCTGTAATCTT
TTTCAAAGTGCTTAAAAGTTTCACCAAGTTTGTTTGCATTTAGAGAGGAC
ATTGGATGGGGGTTGATTGGGCAAAAAAAGGCACGGGGAGTGCCGCTGGT
CAGGGTACCTTTTTTACCTCAATGAGTCCCCAGGTAGGGTCGCAAAAACA
CCAAAATAGAAAAATCAGTCCCTCATAGGGGGAATCCCAGAAGAAAGTGG
AAAATTTTGAGAACATTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTT
TCAAAAAACGACGTCCCACGTAGGGTCCATTTTTCGAATTTCAGTGGCAC
ATTCCCGTCGGGTGGCAAGGGTAATTGCTGCTTTATAGGGTAACCGATTT
ACTCAACTTTGTATCTCTGTTGCACGTTCTTTGATTTAGGAATAAGTGTA
TAAAAAAATAACGCATCAGAACATTTTAAGGATTTACAGGGTCTAGAACA
AAATATTCATTCACAAAATGCCGAAAAAAGAACATTTTGAGTACACTTTT
AAACTTAAAACCAAAGGATTAAGAACACTGGAAGGGTTTGAAATATATTT
GACGTTCTTATAAAGAAGTAGTTATGTAGTCTAGTTGATGAATTTTCAAT
TTTGTTTTTTCTCAGGATGCTGGAAGTAACCCAAGACAACCGTTTTGTCC
TGCATACAAAGTCCTACCACAGATATGAAAGTCATCAACATGGAAGAGAT
AGCTTGTTGAGGAATTGATCAAATTGGAACCCTTATTGTAAAATTGGAAG
ACTAAAGATTTAATGAAATCAAAATTGCCATCGATGGATGTGCCTCCCGA
ATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037908-exon-sc0001734-1575043694:35440..35644 | TCONS_00037908-exon-sc0001734-1575043694:35440..35644 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1575043694:34800..35036 | TCONS_00037908-exon-sc0001734-1575043694:34800..35036 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1575043694:28024..28193 | TCONS_00037908-exon-sc0001734-1575043694:28024..28193 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1575043694:26988..27179 | TCONS_00037908-exon-sc0001734-1575043694:26988..27179 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1510915933:35440..35644 | TCONS_00037908-exon-sc0001734-1510915933:35440..35644 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1510915933:34800..35036 | TCONS_00037908-exon-sc0001734-1510915933:34800..35036 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1510915933:28024..28193 | TCONS_00037908-exon-sc0001734-1510915933:28024..28193 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1510915933:26988..27179 | TCONS_00037908-exon-sc0001734-1510915933:26988..27179 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1491911889:35440..35644 | TCONS_00037908-exon-sc0001734-1491911889:35440..35644 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1491911889:34800..35036 | TCONS_00037908-exon-sc0001734-1491911889:34800..35036 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1491911889:28024..28193 | TCONS_00037908-exon-sc0001734-1491911889:28024..28193 | Clytia hemisphaerica | exon |
| TCONS_00037908-exon-sc0001734-1491911889:26988..27179 | TCONS_00037908-exon-sc0001734-1491911889:26988..27179 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001734 | supercontig | sc0001734:26988..35644 - |
Blast
The following BLAST results are available for this feature:
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