TCONS_00037873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037873
Unique NameTCONS_00037873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037873 ID=TCONS_00037873|Name=TCONS_00037873|organism=Clytia hemisphaerica|type=transcript|length=1502bp
CAATGGAGTTTTTGAGTTCGATTTTCTTTTTGGTGTTACTCAACACATGT
AAAGCAATGCCCAAAGcCAACGTGACGgcagaaacaaacaaaacaatgaA
CAGTATCTCACTCCAACAATCAACCAATCAGCGATTAGTATGCAACGTTA
AAGGCCTACCAATCAACAAATCCTTCAAACTATCATGGTACAAAGGAAAC
GAAGCATTATCAAAGGAGACTTTCAACAACACGAAGAATGAGCACCAATT
TCAGCATGAATTGGGAAAGGGGCCTGAGGCGAGTGGAGCATATCGTTGTG
AAGTTCGAGATGAGGAGGGAAGCATTTTGAGCAGTGAGAGTGTGATCATT
CAAAGAGATTCACCTTatTTGACGATCAAAGAGAGTGCTACGATTCCTGT
CATGAACATCCGTACCAACGAAACGAAACAGACACCGTTCATCATTGAAT
GCGCCGTATCGTCATTCCCACGTGCTAACGTCACCTTTACACGTCTCGGC
GAACTACTGAACAACACCAACCCTCGTGTGGAGGTGACGGTGACTGAAGA
CGGGGATACGGTTACATACACATTGACACTCTCTAGCGTAACTTTCACGG
ATGCAGCGGAATATTTTTGCAGAGCTTCGAATAGAAACCAAGGACAGCCA
CAGAAAATGAAAGTTGGGGTCATTCATTTAGCTGGACAAGAGTGTTCGAA
CAATTTGATCGAAGCATCCAAACAATTGAAATGTCCAAACCAAGAGAAAT
GTATCTCCACAACATTGTGTGGTAAAACATCTCATGAACAATGCAAACTT
TATCGGTGTGAGCGTCCGAGCACACCACAAGAAGCCAAAGTCGTTCGATG
CACTCACAACGCCGTCGAGTTACAATGGTCACCAGACGAGCGCGCCAATA
AATATATCATTCACGTCTTCTCGTCTTACGGCGACAACTACGTCTTACCA
ACCAACGTTAATCGTATCGTTGAGAACGGCTTGCGTTCGAACCAGGAGTA
CACGTTCATTGTTGAAGCTATGAATGACTTTGCGATCAGTGATGCTACCA
ATGTTTTGAAATGCAAAACTAGACGAATGGAGCCACCATCACGTGTACTG
AACACCAAGGTAGATCGAAACAATGAAAACGAGGTCGTGTTGAGATGGGA
TTTACCGAGAGATGATGGTATGAAGGCGGATGAAACGGAAGTCATTANTT
GACAGAGCCTCCATCACGTGTACTGAACACCAAGGTAGATCGAAACAATG
AAAACGAGGTCGTGTTGAGATGGGATTTACCGAGAGATGATGGTATGAAG
GCGGCTGAAACGGAAGTCATCGGTGAACTGCAATATgaagtcaaatattg
tccacaACAAAAGGTCGGTCAAGATTTATTACAAGAATGTAAGAACGTCA
CAACAAAAGAGACGTCACTATCACTTCCGTTGGACGTCAATGTCGACGTC
GTCTACAAATTCACCGTCATCCCTATCAACGGCGGTGGTGTCAAGGGAGA
AG
Run BLAST on NCBI

transcript from alignment at sc0001729:20181..23956+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037873 ID=TCONS_00037873|Name=TCONS_00037873|organism=Clytia hemisphaerica|type=transcript|length=3776bp|location=Sequence derived from alignment at sc0001729:20181..23956+ (Clytia hemisphaerica)
CAATGGAGTTTTTGAGTTCGATTTTCTTTTTGGTGTTACTCAACACATGT
AAAGCAATGCCCAAAGGTAAgcgtaaattttttttcaaaaactcgaAACC
GGAAAATTGGCTTCAGCATAAACCCTACCTTTGTCAGgagagattttttt
cttttttataaaacagCCTAAAGCCGGTTTTCCGTCGAGTATTTTTTCGC
GCAGAATGAATTTTTCTTGAGATTAATTTTCATCTTGAGGTTATTCTGAA
AAAAGTATTCCAACGTTCTATTTTCAGCGTAGCACTAGACTAGAAAAGTA
GTACatggttttattttcattttgcgCGCGATTCTTTTATCCCAGATGAC
GTCAAAATTATATACTGCGCACGCATATCGGTCGAAAAATTCACCCCGCG
CGGACGCTTTAGCCAGTACTCAGTAGTACTGCTTATGGAGTAAGAACATA
TTGAACGAATGAAataatgaacattttctttttcacagcCAACGTGACGg
cagaaacaaacaaaacaatgaACAGTATCTCACTCCAACAATCAACCAAT
CAGCGATTAGTATGCAACGTTAAAGGCCTACCAATCAACAAATCCTTCAA
ACTATCATGGTACAAAGGAAACGAAGCATTATCAAAGGAGACTTTCAACA
ACACGAAGAATGAGCACCAATTTCAGCATGAATTGGGAAAGGGGCCTGAG
GCGAGTGGAGCATATCGTTGTGAAGTTCGAGATGAGGAGGGAAGCATTTT
GAGCAGTGAGAGTGTGATCATTCAAAGAGATTCACCTTGTAAGTATGGGT
GATCTTGTTTTCTTTTGCCTGAGCTGAAGTTGTAGGCTGTACACTgcact
gaaaatcaaaataaacgaaCTGTATAACTTGCCGTTCGATACACAAGAGT
CACAACATTTGTGCGGTTTACTAAGTTGAGAACTTGAAAATTTCCACTAA
CATTCAAAAAGGCTTCATTGATTGTTTCACCGTACTGAACGTGCAGAaag
ccttttgaaaaaagtcggAAAAGTAAAAACAATAACACCGACACATTAAG
TGCTTACCACCTTTTTACCAAAAAGTGAGAATGAAGTATTGAAAACTGTT
TTGCAAAAAGAACTACTTAGTGCATTCATTTTTAGGGTGAGGAGTTTTGC
CTGCAACGTCACTTTTTTTGGCCATAACAAGTTTCAAATTCTACTTTCGA
ACTAACCACATGCGGTTGCACCCGGCTGCGGATTCAAGGGTTGGCCTCCA
ACTAatattacttatttttctttttccagatTTGACGATCAAAGAGAGTG
CTACGATTCCTGTCATGAACATCCGTACCAACGAAACGAAACAGACACCG
TTCATCATTGAATGCGCCGTATCGTCATTCCCACGTGCTAACGTCACCTT
TACACGTCTCGGCGAACTACTGAACAACACCAACCCTCGTGTGGAGGTGA
CGGTGACTGAAGACGGGGATACGGTTACATACACATTGACACTCTCTAGC
GTAACTTTCACGGATGCAGCGGAATATTTTTGCAGAGCTTCGAATAGAAA
CCAAGGACAGCCACAGAAAATGAAAGTTGGGGTCATTCATTTAGCTGGTG
AGTTTAATGAAATCTATGAAAGTACTAATAATGCTTAAGGGTTCAAACAA
TTGCCTAGTGGTCTAAAGCATCTGTTTCATAAACTATGGGGGGGGTCTAG
GTTCGATTACTCGCTTTTCGTGCTTCTTTCATTGAGAACTGGTTGGATGG
accaaatcaaaataatcgAAAAGGGTCCTCGCCCCTTTTATCTACTCAAT
CTCAACATAAAAATAGTAGCGTGGAATAGAAATGGATAGAATTTTTAATG
agcaatcttttcttttcttcataGGACAAGAGTGTTCGAACAATTTGATC
GAAGCATCCAAACAATTGAAATGTCCAAACCAAGAGAAATGTATCTCCAC
AACATTGTGTGGTAAAACATCTCATGAACAATGCAAACTTTATCGGTGTG
GTAAGCGAGCTCtttgaaataaatattattCTCAGTCGAAGGTctagttg
actctctctaattcgacgttctactatttgaCACGCTACATAACTTGATA
CTATTGAAAGCCACCGTCAAACTCTCAGAAATTCTCATAAACGAAActct
actatttgatacgctctcttattcgatgaaaatccaattccctttgaaca
tcgaattagagagtgtcaactgtagtTAAAAACTTGAGCTAACTGCTTTA
CTTTACGGAAAAAACTAACAAAGACAAACTTTACCAACATTTTGATTCGA
TgtgaatcaatcaatcaacatCCTAGGGATTTTTAGTGCTTGCCCTTGAA
CAGCAAAGACAGATTTACCAAATGTTTTACGAATGAAAAGTTCAATTtag
tttcattttcattcatcagAGCGTCCGAGCACACCACAAGAAGCCAAAGT
CGTTCGATGCACTCACAACGCCGTCGAGTTACAATGGTCACCAGACGAGC
GCGCCAATAAATATATCATTCACGTCTTCTCGTCTTACGGCGACAACTAC
GTCTTACCAACCAACGTTAATCGTATCGTTGAGAACGGCTTGCGTTCGAA
CCAGGAGTACACGTTCATTGTTGAAGCTATGAATGACTTTGCGATCAGTG
ATGCTACCAATGTTTTGAAATGCAAAACTAGACGAATGGGTGAGTAGATC
CCTCTAACTCTAACTTCCAAATTACACTCTCATCTCATCTTATTTTTGAT
ACTCATGAAGTAATGTTTACTATGGAGACACCCTGGTTTTTACCAGAAAT
AGCTAACTTCAAACAATTTCACTCTTGCTAAAATTTTGCCACTAAAGCCA
AAAATTGGGTGTTTGCGTAGAAAACATTATGTTGTGAGTATCATGAATAT
TGTAGTCACGCCGTAACATTCACTTTTAACCGTTGGATTAGACACGTGCA
TTTTGTAATGCCTAATTAAAAGATAGCTTCATCTTTTCCGATCTATAACT
TTGCCAATGAGTATGAAACTAATGAACGAATAGAAGAAAGTATAACTAAC
GAATGAGAGGCACTGAAAATAAGACTGAGTTTTCAATAATCTCTTCTCTT
TGACAGAGCCACCATCACGTGTACTGAACACCAAGGTAGATCGAAACAAT
GAAAACGAGGTCGTGTTGAGATGGGATTTACCGAGAGATGATGGTATGAA
GGCGGATGAAACGGAAGTCATTANTTGACAGAGCCTCCATCACGTGTACT
GAACACCAAGGTAGATCGAAACAATGAAAACGAGGTCGTGTTGAGATGGG
ATTTACCGAGAGATGATGGTATGAAGGCGGCTGAAACGGAAGTCATCGGT
GAACTGCAATATgaagtcaaatattgtccacaACAAAAGGTGAGAAGGTC
TTTTTCTTCCTTACTAAGGCTGACTTAAATAGGAGTCTACCGCTTTGGAA
AAGTTTACAAGGTCTTAACCTTAACAGGCATTCAATGAGAATTTAAAATG
AGTATTAGACTTTGCTTCAAGCTGACAACATTACCACCAGACTTCTtcag
aaatgaaaaaagaactttaaaaatgtttaaaatatcaAAGTGAGGATTAC
TACTACTACTGAATCTGACTCTCCTTCTAATTGACAGGTCGGTCAAGATT
TATTACAAGAATGTAAGAACGTCACAACAAAAGAGACGTCACTATCACTT
CCGTTGGACGTCAATGTCGACGTCGTCTACAAATTCACCGTCATCCCTAT
CAACGGCGGTGGTGTCAAGGGAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022577XLOC_022577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037873-exon-sc0001729-1491911889:20181..20246TCONS_00037873-exon-sc0001729-1491911889:20181..20246Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:20181..20246TCONS_00037873-exon-sc0001729-1510915933:20181..20246Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:20181..20246TCONS_00037873-exon-sc0001729-1575043694:20181..20246Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1491911889:20669..20968TCONS_00037873-exon-sc0001729-1491911889:20669..20968Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:20669..20968TCONS_00037873-exon-sc0001729-1510915933:20669..20968Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:20669..20968TCONS_00037873-exon-sc0001729-1575043694:20669..20968Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1491911889:21460..21777TCONS_00037873-exon-sc0001729-1491911889:21460..21777Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:21460..21777TCONS_00037873-exon-sc0001729-1510915933:21460..21777Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:21460..21777TCONS_00037873-exon-sc0001729-1575043694:21460..21777Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1491911889:22055..22180TCONS_00037873-exon-sc0001729-1491911889:22055..22180Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:22055..22180TCONS_00037873-exon-sc0001729-1510915933:22055..22180Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:22055..22180TCONS_00037873-exon-sc0001729-1575043694:22055..22180Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1491911889:22600..22869TCONS_00037873-exon-sc0001729-1491911889:22600..22869Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:22600..22869TCONS_00037873-exon-sc0001729-1510915933:22600..22869Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:22600..22869TCONS_00037873-exon-sc0001729-1575043694:22600..22869Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1491911889:23287..23569TCONS_00037873-exon-sc0001729-1491911889:23287..23569Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:23287..23569TCONS_00037873-exon-sc0001729-1510915933:23287..23569Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:23287..23569TCONS_00037873-exon-sc0001729-1575043694:23287..23569Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1491911889:23818..23956TCONS_00037873-exon-sc0001729-1491911889:23818..23956Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1510915933:23818..23956TCONS_00037873-exon-sc0001729-1510915933:23818..23956Clytia hemisphaericaexon
TCONS_00037873-exon-sc0001729-1575043694:23818..23956TCONS_00037873-exon-sc0001729-1575043694:23818..23956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001729supercontigsc0001729:20181..23956 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0384152	0	0.549914	0.943801	0.586971	0.800495	45.5972	63.5551	29.3318	12.5741	3.97073	4.93949	22.0714	17.1974	14.0691	15.4458	3.57615	4.12326	4.75563	6.78963	11.2988	6.57126	0	0.262828
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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