TCONS_00037872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037872
Unique NameTCONS_00037872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037872 ID=TCONS_00037872|Name=TCONS_00037872|organism=Clytia hemisphaerica|type=transcript|length=2866bp
GAACAATGGAGTTTTTGAGTTCGATTTTCTTTTTGGTGTTACTCAACACA
TGTAAAGCAATGCCCAAAGcCAACGTGACGgcagaaacaaacaaaacaat
gaACAGTATCTCACTCCAACAATCAACCAATCAGCGATTAGTATGCAACG
TTAAAGGCCTACCAATCAACAAATCCTTCAAACTATCATGGTACAAAGGA
AACGAAGCATTATCAAAGGAGACTTTCAACAACACGAAGAATGAGCACCA
ATTTCAGCATGAATTGGGAAAGGGGCCTGAGGCGAGTGGAGCATATCGTT
GTGAAGTTCGAGATGAGGAGGGAAGCATTTTGAGCAGTGAGAGTGTGATC
ATTCAAAGAGATTCACCTTatTTGACGATCAAAGAGAGTGCTACGATTCC
TGTCATGAACATCCGTACCAACGAAACGAAACAGACACCGTTCATCATTG
AATGCGCCGTATCGTCATTCCCACGTGCTAACGTCACCTTTACACGTCTC
GGCGAACTACTGAACAACACCAACCCTCGTGTGGAGGTGACGGTGACTGA
AGACGGGGATACGGTTACATACACATTGACACTCTCTAGCGTAACTTTCA
CGGATGCAGCGGAATATTTTTGCAGAGCTTCGAATAGAAACCAAGGACAG
CCACAGAAAATGAAAGTTGGGGTCATTCATTTAGCTGGACAAGAGTGTTC
GAACAATTTGATCGAAGCATCCAAACAATTGAAATGTCCAAACCAAGAGA
AATGTATCTCCACAACATTGTGTGGTAAAACATCTCATGAACAATGCAAA
CTTTATCGGTGTGAGCGTCCGAGCACACCACAAGAAGCCAAAGTCGTTCG
ATGCACTCACAACGCCGTCGAGTTACAATGGTCACCAGACGAGCGCGCCA
ATAAATATATCATTCACGTCTTCTCGTCTTACGGCGACAACTACGTCTTA
CCAACCAACGTTAATCGTATCGTTGAGAACGGCTTGCGTTCGAACCAGGA
GTACACGTTCATTGTTGAAGCTATGAATGACTTTGCGATCAGTGATGCTA
CCAATGTTTTGAAATGCAAAACTAGACGAATGGAGCCTCCATCACGTGTA
CTGAACACCAAGGTAGATCGAAACAATGAAAACGAGGTCGTGTTGAGATG
GGATTTACCGAGAGATGATGGTATGAAGGCGGCTGAAACGGAAGTCATCG
GTGAACTGCAATATgaagtcaaatattgtccacaACAAAAGGTCGGTCAA
GATTTATTACAAGAATGTAAGAACGTCACAACAAAAGAGACGTCACTATC
ACTTCCGTTGGACGTCAATGTCGACGTCGTCTACAAATTCACCGTCATCC
CTATCAACGGCGGTGGTGTCAAGGGAGAAGCACATACTACAATTCAAGTC
ATCCCAACAAacgATTCAAGAATCTTGAAGATGGTGCCATCAGTGATCTT
AGCATGTTTGATTGTCTCCTTACTGCTGACATCAAAAGAGTTCCTTTAGT
ATGAACACCGAGAGGGAGATAAATAAAGGAACACAGTCAACAGAGGTGGA
GGGAGAGAAAGCTGATGTACAAGCGAGGATGTGCACATATGCTAAGAAGA
TAGCAGAGTTTTGAGCTTTCAAATGACGAGATAAAGTAGTCTTACATTAA
TCTAATGATGACGTTTCTATCAAATTTTAAACGATTTGAATCACGatgtt
tgagaaatttatacgtTTTAGATATTTTGCTACTACTGGAGTAGCTAGAA
GTTTTTGAGtagaaaaaactgatttttttgtaTATTATGAAACGATTATT
GACCATTTTGAAACATTTCTAAAGtgttaaaaataacaaagaacGATTTT
GAAGTCTTGTGTCTTTTCATActaaaatacccaatttctgAAGTTGCTCT
TtgatcaaaattacaaaaatttacaaaaagacTTGACTTACAAAAAATAT
AACATAATGTGGTTTCTGGGGAAAGTGGCAAGAACAACCGAATTTCCACA
CTACTATAtaagatttttgagaattttggccTACAGAATACATATTAGTA
aggttaagtatcgatagaTAAATCACGACGACGTACGAATTTTCTCTAGC
CTTCATTCGTGCCACGGCACTTTTCTACAGGCTGATTGGAAAGCAAGCTA
GACTTACCCCGCaatgaaatcaactttgctTCCAGAACGAATTTCCGATT
GATTTTCCGTTCTAGAAGCAAAGCGGATATAATACACGAGATAAGTCTAG
CTTGCTTTCCGATCAGCCTGTAAAAAAATGCCGTGGGTTGAATGAAGGCT
ATagaaaattcgtccgtcgtcgtgatttatctatcgatacttaacctcac
tattattCACAGTAGAACAGTTAAAACGTAGTAAGTCAGCGTTTTAacac
taaaaatagaaattacCTAGTCTGCAAGGAAAATGACTCAATTAAACTTC
CGAAAATCAAAGATAAAACAGCTCGAAGCCGGTCGGTTAAAGTTAAACGT
TATTTACTTTCCCCGTATTgggcttttcctgaaaatgttcgtacatgggg
gggggaATAATTCTCCGGGGGGtccttgctctgtttgggggtaattttga
atcTCCAGGGGGTcaaacagggggggggtcagtgtaccagaTGGTGAcat
gtatcctggggtgggtgggtgtttgagaaaaaaattaccctgtgtactat
aattggagtgttgggtccaaaatcgattttgaattttactacctgtgtac
caaaataggggtgttgggtccaaaatcgatgttaacagtgtggaaacaaa
aaggttcagaataaattatctgctaaaatagaaatgtaaatttgttctat
tataaattgatcaagc
Run BLAST on NCBI

transcript from alignment at sc0001729:20178..26119+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037872 ID=TCONS_00037872|Name=TCONS_00037872|organism=Clytia hemisphaerica|type=transcript|length=5942bp|location=Sequence derived from alignment at sc0001729:20178..26119+ (Clytia hemisphaerica)
GAACAATGGAGTTTTTGAGTTCGATTTTCTTTTTGGTGTTACTCAACACA
TGTAAAGCAATGCCCAAAGGTAAgcgtaaattttttttcaaaaactcgaA
ACCGGAAAATTGGCTTCAGCATAAACCCTACCTTTGTCAGgagagatttt
tttcttttttataaaacagCCTAAAGCCGGTTTTCCGTCGAGTATTTTTT
CGCGCAGAATGAATTTTTCTTGAGATTAATTTTCATCTTGAGGTTATTCT
GAAAAAAGTATTCCAACGTTCTATTTTCAGCGTAGCACTAGACTAGAAAA
GTAGTACatggttttattttcattttgcgCGCGATTCTTTTATCCCAGAT
GACGTCAAAATTATATACTGCGCACGCATATCGGTCGAAAAATTCACCCC
GCGCGGACGCTTTAGCCAGTACTCAGTAGTACTGCTTATGGAGTAAGAAC
ATATTGAACGAATGAAataatgaacattttctttttcacagcCAACGTGA
CGgcagaaacaaacaaaacaatgaACAGTATCTCACTCCAACAATCAACC
AATCAGCGATTAGTATGCAACGTTAAAGGCCTACCAATCAACAAATCCTT
CAAACTATCATGGTACAAAGGAAACGAAGCATTATCAAAGGAGACTTTCA
ACAACACGAAGAATGAGCACCAATTTCAGCATGAATTGGGAAAGGGGCCT
GAGGCGAGTGGAGCATATCGTTGTGAAGTTCGAGATGAGGAGGGAAGCAT
TTTGAGCAGTGAGAGTGTGATCATTCAAAGAGATTCACCTTGTAAGTATG
GGTGATCTTGTTTTCTTTTGCCTGAGCTGAAGTTGTAGGCTGTACACTgc
actgaaaatcaaaataaacgaaCTGTATAACTTGCCGTTCGATACACAAG
AGTCACAACATTTGTGCGGTTTACTAAGTTGAGAACTTGAAAATTTCCAC
TAACATTCAAAAAGGCTTCATTGATTGTTTCACCGTACTGAACGTGCAGA
aagccttttgaaaaaagtcggAAAAGTAAAAACAATAACACCGACACATT
AAGTGCTTACCACCTTTTTACCAAAAAGTGAGAATGAAGTATTGAAAACT
GTTTTGCAAAAAGAACTACTTAGTGCATTCATTTTTAGGGTGAGGAGTTT
TGCCTGCAACGTCACTTTTTTTGGCCATAACAAGTTTCAAATTCTACTTT
CGAACTAACCACATGCGGTTGCACCCGGCTGCGGATTCAAGGGTTGGCCT
CCAACTAatattacttatttttctttttccagatTTGACGATCAAAGAGA
GTGCTACGATTCCTGTCATGAACATCCGTACCAACGAAACGAAACAGACA
CCGTTCATCATTGAATGCGCCGTATCGTCATTCCCACGTGCTAACGTCAC
CTTTACACGTCTCGGCGAACTACTGAACAACACCAACCCTCGTGTGGAGG
TGACGGTGACTGAAGACGGGGATACGGTTACATACACATTGACACTCTCT
AGCGTAACTTTCACGGATGCAGCGGAATATTTTTGCAGAGCTTCGAATAG
AAACCAAGGACAGCCACAGAAAATGAAAGTTGGGGTCATTCATTTAGCTG
GTGAGTTTAATGAAATCTATGAAAGTACTAATAATGCTTAAGGGTTCAAA
CAATTGCCTAGTGGTCTAAAGCATCTGTTTCATAAACTATGGGGGGGGTC
TAGGTTCGATTACTCGCTTTTCGTGCTTCTTTCATTGAGAACTGGTTGGA
TGGaccaaatcaaaataatcgAAAAGGGTCCTCGCCCCTTTTATCTACTC
AATCTCAACATAAAAATAGTAGCGTGGAATAGAAATGGATAGAATTTTTA
ATGagcaatcttttcttttcttcataGGACAAGAGTGTTCGAACAATTTG
ATCGAAGCATCCAAACAATTGAAATGTCCAAACCAAGAGAAATGTATCTC
CACAACATTGTGTGGTAAAACATCTCATGAACAATGCAAACTTTATCGGT
GTGGTAAGCGAGCTCtttgaaataaatattattCTCAGTCGAAGGTctag
ttgactctctctaattcgacgttctactatttgaCACGCTACATAACTTG
ATACTATTGAAAGCCACCGTCAAACTCTCAGAAATTCTCATAAACGAAAc
tctactatttgatacgctctcttattcgatgaaaatccaattccctttga
acatcgaattagagagtgtcaactgtagtTAAAAACTTGAGCTAACTGCT
TTACTTTACGGAAAAAACTAACAAAGACAAACTTTACCAACATTTTGATT
CGATgtgaatcaatcaatcaacatCCTAGGGATTTTTAGTGCTTGCCCTT
GAACAGCAAAGACAGATTTACCAAATGTTTTACGAATGAAAAGTTCAATT
tagtttcattttcattcatcagAGCGTCCGAGCACACCACAAGAAGCCAA
AGTCGTTCGATGCACTCACAACGCCGTCGAGTTACAATGGTCACCAGACG
AGCGCGCCAATAAATATATCATTCACGTCTTCTCGTCTTACGGCGACAAC
TACGTCTTACCAACCAACGTTAATCGTATCGTTGAGAACGGCTTGCGTTC
GAACCAGGAGTACACGTTCATTGTTGAAGCTATGAATGACTTTGCGATCA
GTGATGCTACCAATGTTTTGAAATGCAAAACTAGACGAATGGGTGAGTAG
ATCCCTCTAACTCTAACTTCCAAATTACACTCTCATCTCATCTTATTTTT
GATACTCATGAAGTAATGTTTACTATGGAGACACCCTGGTTTTTACCAGA
AATAGCTAACTTCAAACAATTTCACTCTTGCTAAAATTTTGCCACTAAAG
CCAAAAATTGGGTGTTTGCGTAGAAAACATTATGTTGTGAGTATCATGAA
TATTGTAGTCACGCCGTAACATTCACTTTTAACCGTTGGATTAGACACGT
GCATTTTGTAATGCCTAATTAAAAGATAGCTTCATCTTTTCCGATCTATA
ACTTTGCCAATGAGTATGAAACTAATGAACGAATAGAAGAAAGTATAACT
AACGAATGAGAGGCACTGAAAATAAGACTGAGTTTTCAATAATCTCTTCT
CTTTGACAGAGCCACCATCACGTGTACTGAACACCAAGGTAGATCGAAAC
AATGAAAACGAGGTCGTGTTGAGATGGGATTTACCGAGAGATGATGGTAT
GAAGGCGGATGAAACGGAAGTCATTANTTGACAGAGCCTCCATCACGTGT
ACTGAACACCAAGGTAGATCGAAACAATGAAAACGAGGTCGTGTTGAGAT
GGGATTTACCGAGAGATGATGGTATGAAGGCGGCTGAAACGGAAGTCATC
GGTGAACTGCAATATgaagtcaaatattgtccacaACAAAAGGTGAGAAG
GTCTTTTTCTTCCTTACTAAGGCTGACTTAAATAGGAGTCTACCGCTTTG
GAAAAGTTTACAAGGTCTTAACCTTAACAGGCATTCAATGAGAATTTAAA
ATGAGTATTAGACTTTGCTTCAAGCTGACAACATTACCACCAGACTTCTt
cagaaatgaaaaaagaactttaaaaatgtttaaaatatcaAAGTGAGGAT
TACTACTACTACTGAATCTGACTCTCCTTCTAATTGACAGGTCGGTCAAG
ATTTATTACAAGAATGTAAGAACGTCACAACAAAAGAGACGTCACTATCA
CTTCCGTTGGACGTCAATGTCGACGTCGTCTACAAATTCACCGTCATCCC
TATCAACGGCGGTGGTGTCAAGGGAGAAGCACATACTACAATTCAAGTCA
TCCCAACAAGTAAGTGTCTTCACACTTCAGTTCATTTACTCCCTTCCATG
TTtcattcttttcaatttcatattACTTCCTTAGAAAATCTAGATGCGTA
CgcatatttttgatttttaataagACCTAATTTAAGCTTCTTTCTTTTGC
ATTCTGAATTCTTGAACGATCTATTGTCGCTGTCCAGACCAATAACGTTT
AGGCGAAGGCTAGGGTCGAATCTCCTACGTAGTAagatttgaagccactt
atttcctacaTATGTTGCGCGGCCCACATGGTTTCATACATACAAATAGT
GGTTTGGAAATAACATTTCCCAGCGAAAACAAAAAGAAGTGGTAGGTTCA
ATCCGTCATCTGAAATGCAGCACAAATNcgaaaacaaaaaaaagtggTAG
GTTCAATCCGTCATCTGAAATGCAGCACAAATTTCAAGACAAAACTTTTG
CTTGCCCGAGATAAGTTGAAGACTCGCCTCTAGCTTTTggtttgaaactc
aatggtcctGACTGTAAGTAGCGACAAGAATCTCATCAACACAATCTTAC
GCACAATATTCTAATATCTGAAAAAAATAGTTAATAACTGAAAAGACTAA
CCTTGAACTTCGATTTTTGGTCTTTCGGCTACACCAATCAAGTCTAGAGA
GAAATGGATTAAacaattcttcattttctttttcagacgATTCAAGAATC
TTGAAGATGGTGCCATCAGTGATCTTAGCATGTTTGATTGTCTCCTTACT
GCTGACATCAAAAGAGTTCCTTTAGTATGAACACCGAGAGGGAGATAAAT
AAAGGAACACAGTCAACAGAGGTGGAGGGAGAGAAAGCTGATGTACAAGC
GAGGATGTGCACATATGCTAAGAAGATAGCAGAGTTTTGAGCTTTCAAAT
GACGAGATAAAGTAGTCTTACATTAATCTAATGATGACGTTTCTATCAAA
TTTTAAACGATTTGAATCACGatgtttgagaaatttatacgtTTTAGATA
TTTTGCTACTACTGGAGTAGCTAGAAGTTTTTGAGtagaaaaaactgatt
tttttgtaTATTATGAAACGATTATTGACCATTTTGAAACATTTCTAAAG
tgttaaaaataacaaagaacGATTTTGAAGTCTTGTGTCTTTTCATActa
aaatacccaatttctgAAGTTGCTCTTtgatcaaaattacaaaaatttac
aaaaagacTTGACTTACAAAAAATATAACATAATGTGGTTTCTGGGGAAA
GTGGCAAGAACAACCGAATTTCCACACTACTATAtaagatttttgagaat
tttggccTACAGAATACATATTAGTAaggttaagtatcgatagaTAAATC
ACGACGACGTACGAATTTTCTCTAGCCTTCATTCGTGCCACGGCACTTTT
CTACAGGCTGATTGGAAAGCAAGCTAGACTTACCCCGCaatgaaatcaac
tttgctTCCAGAACGAATTTCCGATTGATTTTCCGTTCTAGAAGCAAAGC
GGATATAATACACGAGATAAGTCTAGCTTGCTTTCCGATCAGCCTGTAAA
AAAATGCCGTGGGTTGAATGAAGGCTATagaaaattcgtccgtcgtcgtg
atttatctatcgatacttaacctcactattattCACAGTAGAACAGTTAA
AACGTAGTAAGTCAGCGTTTTAacactaaaaatagaaattacCTAGTCTG
CAAGGAAAATGACTCAATTAAACTTCCGAAAATCAAAGATAAAACAGCTC
GAAGCCGGTCGGTTAAAGTTAAACGTTATTTACTTTCCCCGTATTgggct
tttcctgaaaatgttcgtacatgggggggggaATAATTCTCCGGGGGGtc
cttgctctgtttgggggtaattttgaatcTCCAGGGGGTcaaacaggggg
ggggtcagtgtaccagaTGGTGAcatgtatcctggggtgggtgggtgttt
gagaaaaaaattaccctgtgtactataattggagtgttgggtccaaaatc
gattttgaattttactacctgtgtaccaaaataggggtgttgggtccaaa
atcgatgttaacagtgtggaaacaaaaaggttcagaataaattatctgct
aaaatagaaatgtaaatttgttctattataaattgatcaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022577XLOC_022577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037872-exon-sc0001729-1491911889:20178..20246TCONS_00037872-exon-sc0001729-1491911889:20178..20246Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:20178..20246TCONS_00037872-exon-sc0001729-1510915933:20178..20246Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:20178..20246TCONS_00037872-exon-sc0001729-1575043694:20178..20246Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:20669..20968TCONS_00037872-exon-sc0001729-1491911889:20669..20968Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:20669..20968TCONS_00037872-exon-sc0001729-1510915933:20669..20968Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:20669..20968TCONS_00037872-exon-sc0001729-1575043694:20669..20968Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:21460..21777TCONS_00037872-exon-sc0001729-1491911889:21460..21777Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:21460..21777TCONS_00037872-exon-sc0001729-1510915933:21460..21777Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:21460..21777TCONS_00037872-exon-sc0001729-1575043694:21460..21777Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:22055..22180TCONS_00037872-exon-sc0001729-1491911889:22055..22180Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:22055..22180TCONS_00037872-exon-sc0001729-1510915933:22055..22180Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:22055..22180TCONS_00037872-exon-sc0001729-1575043694:22055..22180Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:22600..22869TCONS_00037872-exon-sc0001729-1491911889:22600..22869Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:22600..22869TCONS_00037872-exon-sc0001729-1510915933:22600..22869Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:22600..22869TCONS_00037872-exon-sc0001729-1575043694:22600..22869Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:23412..23569TCONS_00037872-exon-sc0001729-1491911889:23412..23569Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:23412..23569TCONS_00037872-exon-sc0001729-1510915933:23412..23569Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:23412..23569TCONS_00037872-exon-sc0001729-1575043694:23412..23569Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:23818..23986TCONS_00037872-exon-sc0001729-1491911889:23818..23986Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:23818..23986TCONS_00037872-exon-sc0001729-1510915933:23818..23986Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:23818..23986TCONS_00037872-exon-sc0001729-1575043694:23818..23986Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1491911889:24664..26119TCONS_00037872-exon-sc0001729-1491911889:24664..26119Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1510915933:24664..26119TCONS_00037872-exon-sc0001729-1510915933:24664..26119Clytia hemisphaericaexon
TCONS_00037872-exon-sc0001729-1575043694:24664..26119TCONS_00037872-exon-sc0001729-1575043694:24664..26119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001729supercontigsc0001729:20178..26119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.350848	0.377605	0.257014	0.502895	0.414153	0.526477	0.393309	0.437674	0.318751	0.477172	0.633345	0	0	0	0	0	9.25399e-07	0	0	0	0	0	0.274117	0	0	0	0	0	0.507346	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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