TCONS_00037850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037850
Unique NameTCONS_00037850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037850 ID=TCONS_00037850|Name=TCONS_00037850|organism=Clytia hemisphaerica|type=transcript|length=1178bp
ACCCGTCTATGTAAATAGTAGCGGATGGACATCGGTTTACGCTATTAAAA
AAATACGGATCTTCATCGAAGTACGCTGTTGCTCTGAATCTCTAATGACT
GGCGTAGCGGATGACCATCAGATAACGTTCTTTCAAATACCTACATGCAG
TTACTGGATCCGGGTGCTTTTCATTTTAAGCGTAAACAACATGGCGACTG
CACGCTTACAGAAAGATGTCTTCATGAGTGTTTATTTTCAAGcCATGTGG
AAACAAATTAAAGGCACTCTTCACCCTGAACTTGATGGAAATAGTAGCCG
TAAGAGAAGAGTActagaaaaattgaagaaagatcAGAAGAAGAAAATAG
AATCCATGGTGGACGAATTGAGCGTTgaggaaattttcaaacaaattggT
GAACAGTTATCTTCTCAGTTTAAGGTATCTTTGCAGCTCCAAATACCTGA
CATTCAAAATGGTACACAAGAGcCTTTGTCTGATGTAGAAGAAAATGGAA
ATGATTTATCAGACAATGTCGAATTTGAACAACGAGAGaatGACCATCCT
AAGAGTAAGCGCTTCAAGTGGAGGACTAAAGAAGTAACTGTTGAAGAACA
tcagagaaagaaaattgataggttGAAACAGGTGAATAGTGAACAGGCAC
ACACTATCTCAGTTTTACGCGAGAAAAATGCTTCCCTTTCAATGACAAGT
GCGAGTTACACCCACCAAAAGATGGTAGAGCAACTTGGGCAAACGCGTTC
GGCATCGTTAGTGGATGCATCCCTTTTTTCTAACGCCTTCCATTCCGGGG
ACTGCGTTTTGCAAAAAGAAGAGCCCATATTCCTCGATGAGAGTGAATTT
AAGGGATTAAAAGTCACGAATTTACCCGCCGGCTTTTTTTGCGATGTCAA
GCGATACTGGTTTCGCGATATTAATGATTCTGTTGCTGTTAAATGCACTA
AAACTGATATTTTTGGGCATCAAGGAATTTCAATCTTAAGCCATGAACAC
CGGCTTCTAGTCTTTACTGGCaaacacaaaaacattgttcgTACCATGGG
TTTGGTGGGCATAAGTGGTGTTTTGTCCCACGTTATGTATTACCAAGATG
GAACAAGGCTCGACTTTATGATGCAAAAGTCtacattcaaaaactttttc
gttTTCAGAGAGTTAATAGAAGGTTCNN
Run BLAST on NCBI

transcript from alignment at sc0001726:17945..24266-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037850 ID=TCONS_00037850|Name=TCONS_00037850|organism=Clytia hemisphaerica|type=transcript|length=6322bp|location=Sequence derived from alignment at sc0001726:17945..24266- (Clytia hemisphaerica)
ACCCGTCTATGTAAATAGTAGCGGATGGACATCGGTTTACGCTATTAAAA
AAATACGGATCTTCATCGAAGTACGCTGTTGCTCTGAATCTCTAATGACT
GGCGTAGCGGATGACCATCAGATAACGTTCTTTCAAATACCTACATGCAG
TTACTGGATCCGGGTGCTTTTCATTTTAAGCGTAAACAACATGGCGACTG
CACGCTTACAGAAAGATGTCTTCATGAGTGTTTATTTTCAAGGTTTGTAA
CTCAGTTTCTTCTCTAATTTATTATAAAGTTTATGGATTTGAACAACCAT
TTTCATATTTTATTTGCACTCATGCAAACTTCTCTCTCTCTCTCTCTGCT
GACAACACTTTTTTCCACATATTCACCCATGATGATAACCAAGTCAAATC
AAATGTAATTGCGGTATTAAATTATCATATACCGGTATATATTAAGGACT
TGGATTACCTAATAGCTGATTGATAAACCATCAATCGACTCTTGCAGACT
TTCATAACATCGACCACTTGTTGCTTGTGATCTTTTCCCAATTAAAAATT
ATACGAAACCAATCAAATATAGCTACTTGATGATATCCATTGATTGACGN
CTTGTGATCTTTTCCCAATGAAAAATTATACGAAACCAATCAAATATAGC
TACTTGATATCCATTGATTGACGTCCGTATAGATTTCAATAGAGGAGGGA
ATATCCTATCAAAGGCATTTATGCATTAGTAGAGATGTGTATACTAGACC
TTCTCTTGTCGATGTTTTCGAAGAAGTCAAACAGTCAAACCCTGGTCAAA
CCAGGCTCTCCCCCCCACTCGATACAATACAATCAATACATTTTTTCAAC
GAAAACAATGACCAATCGATAGATTAGATATTGATTGGTTCCGACAATGG
ATAGGTAATCAAGCCTATTCCAAAATCTTGAGTATCCATTGATCATCGAT
TGAATAGACCTTTTCACCTTTCCATCCGCCATATTGAATTGTATGCAAAA
ATTATGGTGGCCGAATTGCCATGGTGAAATTCCCTTAGAAAGTATGCAAA
ACATATGCAAAATATAAAACTTACATGCATAATTGGCATTATATTAAAGT
GTAATCTTGTAGAAGAAAGATTAAATTTACTTCTCTTGAAAACTAAAAAT
AATTATTTTTACCCTACTCTTCAAAAGCACTTCAAAAAACCATAACATTA
GACATACATGAACTCAAGCTGAAAAATCACTAGCAAAGGTACAAAAATAA
TCCTTATTCGGCTGACGATAAATTATTCTCCTGGGAATAAAACCGCTGAT
TGAAAAAAATTGCGTGTTTTGAAAGTTTGATGTGTGTACTCCGTCTTCGT
GGATTTTTTTAATGGCATGAAAACAGATAATGCTTTGTCTTTAAGAACAA
ATTTCTAAAAGGCTTTTTTTGTTCTGTAAATCTTTCTTTTTGGATTAAAA
AATTCCATCTAGTTCATNAAATCACTAGCAAAGGTACAAAAATAATCCTT
ATTCGGCTGACGATAAATTATTCTCCTGGGAATAAAACCGCTGATTGAAA
AAAATTGCGTGTTTTGAAAGTTTGATGTGCGTACTCCGTCTTCGTGGATT
GAAATGATGAAATCGTTTAACATCGATCATCTTTATAATGAGGCAATTTT
TTAAACGGTTTTAATGATTATCCATTATACCTATCGATTATTGAAACCAA
TCGCTATCCAATCCAGCGATTTGTTATCAATTGGTCTGATCAAGAGCTAT
ATCGATTGTATATATTGTATCGATTGGGAGAGTCTGGGTCAAATTCAATT
GAAATTCAATCAAAGTCAATTGAAGTCAGGTAAGTTTATCAAATTGATTT
TCAAAGGAATCAAAGTTGTCAATTAATAAATAAGCTTCAAAAAATGTATA
TAAATCTTTCGAATATACCTTTTGCAGAACGCAATGTTACGCTGAATAAT
TAATAACTCCAGCATCATCAAAACAATGAGAAGAAAAATTTATTACACTG
TTTTACTAATTCTGCATTCATGTGTTATTGTTTTAATGCTGGAGTTTTTA
ACTATTCAACATGACATCGTGAGCTGTAAAAGGTCTATTGACTATGGTCT
TCAATTAATTTGATTGGCTTCGATTGATTATAATGATTAGGTAACGCAGG
TTGGTCCATGACAGCCCCCTTCTAATTTCGTCAGCCTTCTTTAGAAATAG
GAATAAAAGACCTTTTTCCTAATCACAATGTCATGTTCAAATAATTAAAA
ACTCCAGCATCAAAACAAAACAGGAAAAGATTTAGTTCAATACCCACTTT
TTGTCAGTGTGTTATTGATTTGTTAATACTGGAGTTTTTTATTATTTAAA
ATGACATCATTAGGAAGAGTTCTTTTAAGAAGGTAGGAATTACTGGTTGA
GACTTTATTTTTAAATGTGGGTAGGAGACTTAACATTTAACAAAAGAAAT
ATTAAGCCAGAGTCTTCAAAAAATAAATATATCATTGGAAAAATTAGGGC
AAAAAGAGCAGCTAAAAACTGTAATATTTTACTTTCAAAAATACTTCAGG
GCCTATTTCTAGGCAAGAATTATTCATGTTTTTTATGGAAATTATCTCAA
CTAGTATCATCACTGAAATCTTTGGCTGACAAAAGCTTGAGAATGCAGGA
TTGAAATCAGGGTATTTTGCTCAATTGTTCAAGCCATAAAATTTTTGACA
AGTCCGACAAAATGTTTGAATGATTTTTTTCTATTAAGCACTTCTTTAAA
TCACTGTTGGCATTAAGTTTTTGTCTAAAGATGTACATTCGTTCTTCATT
TGTGTGATGGAAAGAACATGCCAAAAGCAGAAATGCTCCTGGCTGGAAGG
CTTGATTTTCATCGTCCATCATAATGAAATGATATAGATTCCATCATCAT
CATTGTACAGAAAACTTTCCACTTTGAAAGTAAAAAATACAGAAAGTTTA
CAGAAAAGAATGGAATCCCCCTACTGTAAAGGAAGTGAGTAAAGTGAGTA
AGTGAAAACAAACAATCTAGGGAATTCATTTTTTTCTCATTGTCATGAAA
ACTTCCAGGTTCATGGTCATTTATTAAAAACAACTCCAAATTCCTTGTAT
ATCTGTTTTGCCTTGTGCCATATTGGTGAAATTTGTAAGTCATTGTTTAC
CAATAACTGTTTACCAAAAATTACCTGATCAATACTACTATACCAAAAAT
TACCTTTAATACTACTATCAATATTAGCAGATTTTATTCATGGAATATTT
TTTAAAGAATAACGATTTCCTTTGGTATAGCCAAAATTAAGTAATACTTG
CTGTATTACACTAAGTACAGTTCCGAAAGTGTTCCTGTGTGAAGAAACAA
AGAAAACTATTGTATTGAATCTCCAGATAGCCATTAATTTTCTCGCACTT
TTTGGAATGAAGACTCTCCATAGGCCAGATAAGTAAACGTGGGAAAAGAC
ATTTACTGAGCCAAATTTTTGTTGTTGTTGTTTTAATGAGATCGATCGAT
TTAAAATCTTTTTCTGGTAAAGAATTCATACAGTGGCATGAGATGAAAAG
TTTTTTTGGGTTCTTTTTAAAGGATCAAGCTACATAGGTACGAGTTTGTT
AAGGATGTTAATAGAATTAGAGGGTTAACTTCAAGTTTTATTACTATATT
TTCTATCGTTTTTAAATTTACTGAGTTTCTATCATTTTTTTTTCCTTTCA
GCCATGTGGAAACAAATTAAAGGCACTCTTCACCCTGAACTTGATGGAAA
TAGTAGCCGTAAGAGAAGAGTACTAGAAAAATTGAAGAAAGATCAGAAGG
TGCTAATTACAAATTAGTAATTTTGTTCCTTTGCTATCATCTTTAGCATA
CCAATTTCTGGTGACTATAAATTATTTATTTTAAATTTATAATTACACCA
AATTGATTAATACTGCAGAAAGAGCAAAGTATATCTTATTAAGTTTTAAG
TTGTTTGTTTGTCTAATAATTCAGAAGAAAATAGAATCCATGGTGGACGA
ATTGAGCGTTGAGGAAATTTTCAAACAAATTGGTGAACAGTTATCTTCTC
AGTTTAAGGTAATTGAATAATTACTCTTATGAAATTCGACTATTTATTAC
AACTCTTCAGCAATTTTAATACAAAAGACTTCTTTCAGACTTGAGAAACT
TCATGATATGAAAAAAAAACACAACAAAATTCGATATAAAGTCTCCTCAC
TTTGTTTAAAACTCTCAAAAAAATTAGCTGAGAGAATAAGGATGGTTTAG
ATGAAAAAGTACTCTATTATTTATAAGCATTAATTGTCAATTGATTTTTG
GGGAAGATTCGGTTTACATTGAATCCGCAATTATATGATGGTCATTAGAT
TGTTTCTTTTCATTATTAAATCCATTTTTAATTCTTTGTCTAATTCTTAG
TCTTAAAAATTGAAACATACACTCTCGATGGAGAGAATCTAGCCTTTGAT
TTCAAACATACAAAGATAATACACCTACATACATATAATAATTGAGTAAA
GTTTGCGTTTGGTATGAGTTTAATGGTGCACAAATCTTTTTAGGTATCTT
TGCAGCTCCAAATACCTGACATTCAAAATGGTACACAAGAGGTGACATTT
TGGATTTATATTTTCAAGCCTTAATATTGGACTTAAAATAATCCAAGTAG
TAGGGGAAAATTCCAAGAACTTTGCTTTACCACGTCCTTTCTTTTAAGTT
GGATTTCAAACGTGTAAGAGAAAAGATTTAGGCGACTTAAAGTTCACACT
GTATTTAAAGTTTACACTGTATTTTCATTGGTTTGTGCAGTTTTTTTCTG
CTTTGAGACAGGGTCACTTAATTTAGTTTAACAAATCGAATTTGAAATTG
AGTTTCTACCACCGTATAACTCTGGTAAAAAATTTCGTGGCAATTTCTCT
ATAATTCATTTAAACGGCCTTTAAATACGATTAAAATGAAACTACTATTA
AGTGACCTAAGTTAAAATTCTGTTTATGTATTGAAATAAGATGTAAATTG
CTCGTTTATTCTGAATGAAAAATTTTTCAGCCTTTGTCTGATGTAGAAGA
AAATGGAAATGATTTATCAGACAATGTCGAATTTGAACAACGAGAGGTAA
ATCAGAGATATTCATATTTGTGGGAAGGCTGACGTGCGATTCTCTTTTGT
TTTGTTGATTCTGCATTCCTTTTTTTCTTATTGTAACATTTTTAATATGA
TTTTCGTGTCGTTTAGGCTTTCTTTTCTTTATCAATTTAGACCGTATTCA
CAAGTTATCGTTCCGTCCTGTTCTAAAACTTAATGAAACTTATTGAAAAA
TTACAGCTGGCAGTAGAAAGACTTCATCTCGGTTCGGAACAGAACGGAAA
CGTAATGGATGAACATAGTTATAAGAGAAGACATTACGATGTCTATTTTC
CATTTCGAATAGACTTTACATCACAAAAACGATTATATACATCTTTGCTA
CACAGGCTAATGAATGATGGGGAATTAGGACTGATTGTCCTCTAATGAGG
AGCTTTCATTATGAAATGGCCTATTGTCAGAAATAGGCTGATACACACCT
TTTGAGAATCAAAATTTGACCTTTAGTGTTGTGTGGTATGTAAGGAGATC
ATAGGATGATGTATCTGGTTTTCGGGTTTAAGAGCTCAAAGTTTTGTTTG
ATTTTCCAATTTGAAAATGTTTTTTCTTTTAGAATGACCATCCTAAGAGT
AAGCGCTTCAAGTGGAGGACTAAAGAAGTAACTGTTGAAGAACATCAGAG
AAAGAAAATTGATAGGTTGAAACAGGTGAATAGTGAACAGGCACACACTA
TCTCAGTTTTACGCGAGAAAAATGCTTCCCTTTCAATGACAAGTGCGAGT
TACACCCACCAAAAGATGGTAGAGCAACTTGGGCAAACGCGTTCGGCATC
GTTAGTGGATGCATCCCTTTTTTCTAACGCCTTCCATTCCGGGGACTGCG
TTTTGCAAAAAGAAGAGCCCATATTCCTCGATGAGAGTGAATTTAAGGGA
TTAAAAGTCACGAATTTACCCGCCGGCTTTTTTTGCGATGTCAAGCGATA
CTGGTTTCGCGATATTAATGATTCTGTTGCTGTTAAATGCACTAAAACTG
ATATTTTTGGGCATCAAGGAATTTCAATCTTAAGCCATGAACACCGGCTT
CTAGTCTTTACTGGCAAACACAAAAACATTGTTCGTACCATGGGTTTGGT
GGGCATAAGTGGTGTTTTGTCCCACGTTATGTATTACCAAGATGGAACAA
GGCTCGACTTTATGATGCAAAAGTCTACATTCAAAAACTTTTTCGTTTTC
AGAGAGTTAATAGAAGGTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022559XLOC_022559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037850-exon-sc0001726-1575043694:24025..24266TCONS_00037850-exon-sc0001726-1575043694:24025..24266Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1575043694:20468..20565TCONS_00037850-exon-sc0001726-1575043694:20468..20565Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1575043694:20209..20292TCONS_00037850-exon-sc0001726-1575043694:20209..20292Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1575043694:19676..19723TCONS_00037850-exon-sc0001726-1575043694:19676..19723Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1575043694:19171..19236TCONS_00037850-exon-sc0001726-1575043694:19171..19236Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1575043694:17945..18584TCONS_00037850-exon-sc0001726-1575043694:17945..18584Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1510915933:24025..24266TCONS_00037850-exon-sc0001726-1510915933:24025..24266Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1510915933:20468..20565TCONS_00037850-exon-sc0001726-1510915933:20468..20565Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1510915933:20209..20292TCONS_00037850-exon-sc0001726-1510915933:20209..20292Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1510915933:19676..19723TCONS_00037850-exon-sc0001726-1510915933:19676..19723Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1510915933:19171..19236TCONS_00037850-exon-sc0001726-1510915933:19171..19236Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1510915933:17945..18584TCONS_00037850-exon-sc0001726-1510915933:17945..18584Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1491911889:24025..24266TCONS_00037850-exon-sc0001726-1491911889:24025..24266Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1491911889:20468..20565TCONS_00037850-exon-sc0001726-1491911889:20468..20565Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1491911889:20209..20292TCONS_00037850-exon-sc0001726-1491911889:20209..20292Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1491911889:19676..19723TCONS_00037850-exon-sc0001726-1491911889:19676..19723Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1491911889:19171..19236TCONS_00037850-exon-sc0001726-1491911889:19171..19236Clytia hemisphaericaexon
TCONS_00037850-exon-sc0001726-1491911889:17945..18584TCONS_00037850-exon-sc0001726-1491911889:17945..18584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001726supercontigsc0001726:17945..24266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.543059	0.283577	0.538913	0.364257	13.0394	13.2479	4.67339	6.91276	2.94063	2.95685	1.54676	1.75527	0.880648	1.50638	1.29626	1.96039	2.34676	1.82955	1.36221	1.13218	1.28249	0.617137	0.435982	0.833617	0.196547	0.626961	0.598119	0.229239	0.938951	0.41106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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