TCONS_00037790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037790
Unique NameTCONS_00037790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037790 ID=TCONS_00037790|Name=TCONS_00037790|organism=Clytia hemisphaerica|type=transcript|length=948bp
CAGCAGTAAAAATGATGTAAAAGTATTCCCCAACTATCCTAGCAACACTT
TCAGTCAGTATTCTTCGCTCCTGAAGCTTTTGAAGGGTATCGGTTATCGT
GAAACTAGAGGACATAGTCGGCGACAGttgcaaagtttccaaaaaccgTA
AGCCTTTTGAGGCAGACTCATTGATATCAAATCTGGTCTCTTTTGCCCAA
AGTAATGCTACATGTCATCATAACAATTCCATGTGGGTGTTATGTGGTTT
CTGCCATCATTTTGATCCATAAAAGCTGTAATCAGGACGTAGTTATGAGG
CAAGAATTTCGGGACCGATCGACCGTCGCTGGTGGAGTGGAAGAAGCAAT
GCAATTCAACATAACTCCagggttttcaaatttattggtGCTTCTCTGAA
ATATATGAGGTGTAGAAAACacttttacattgaatttttcCACTTTCCAT
GCTCCAAcctgaagaaaaattgaaaaatactgTAAATTTGGGTCGACCCC
GATGGTTTGTCGAGATAAGTggtcaaaatgacaaataaatggaattttta
tgctaaaaacaaaacaaaaaatatgagaTATACTTACTGGATTCTTTgcc
attataaaaacaatgtatCCATGAAGAAAAGTGGCCTAAACCAGTCAAAT
AATCCAAGAACTTTAGcagtaagtttgaaaaagccatttcttggtcgcca
tcttgattcagtgtttttctcaaCCTTTTCTCCGAAATCTGCTGCCTCac
cacgtgatcaaaacattacatcaacatatatcaaaagaaagcttagaacc
tctactttccgtttctctttacttctacggctagcaaagaagccaatggg
agaaaaatagcttagaagatcactatgtaaaaaaacgtgtatacacgtct
gccggaacgtatgctcgacgtgtatacacgtctgccgggctgaaaagg
Run BLAST on NCBI

protein sequence of TCONS_00037790-protein

>TCONS_00037790-protein ID=TCONS_00037790-protein|Name=TCONS_00037790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MTNKWNFYAKNKTKNMRYTYWILCHYKNNVSMKKSGLNQSNNPRTLAVSL
KKPFLGRHLDSVFFSTFSPKSAASPRDQNITSTYIKRKLRTSTFRFSLLL
RLAKKPMGEK
Run BLAST on NCBI

transcript from alignment at sc0001713:3914..4936+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037790 ID=TCONS_00037790|Name=TCONS_00037790|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at sc0001713:3914..4936+ (Clytia hemisphaerica)
CAGCAGTAAAAATGATGTAAAAGTATTCCCCAACTATCCTAGCAACACTT
TCAGTCAGTATTCTTCGCTCCTGAAGCTTTTGAAGGGTATCGGTTATCGT
GAAACTAGAGGACATAGTCGGCGACAGttgcaaagtttccaaaaaccgTA
AGCCTTTTGAGGCAGACTCATTGATATCAAATCTGGTCTCTTTTGCCCAA
AGTAATGCTACATGTCATCATAACAATTCCATGTGGGTGTTATGTGGTTT
CTGCCATCATTTTGATCCATAAAAGCTGTAATCAGGACGTAGTTATGAGG
CAAGAATTTCGGNCTGTTATGTGGTTCCTGCCATCATTTTGATCCATAAA
AGGTGTACAGGACGTAGTTACGAGGCAAGAATTTCGGGACCGATCGACCG
TCGCTGGTGGAGTGGAAGAAGCAATGCAATTCAACATAACTCCagggttt
tcaaatttattggtGCTTCTCTGAAATATATGAGGTGTAGAAAACacttt
tacattgaatttttcCACTTTCCATGCTCCAAcctgaagaaaaattgaaa
aatactgTAAATTTGGGTCGACCCCGATGGTTTGTCGAGATAAGTggtca
aaatgacaaataaatggaatttttatgctaaaaacaaaacaaaaaatatg
agaTATACTTACTGGATTCTTTgccattataaaaacaatgtatCCATGAA
GAAAAGTGGCCTAAACCAGTCAAATAATCCAAGAACTTTAGcagtaagtt
tgaaaaagccatttcttggtcgccatcttgattcagtgtttttctcaaCC
TTTTCTCCGAAATCTGCTGCCTCaccacgtgatcaaaacattacatcaac
atatatcaaaagaaagcttagaacctctactttccgtttctctttacttc
tacggctagcaaagaagccaatgggagaaaaatagcttagaagatcacta
tgtaaaaaaacgtgtatacacgtctgccggaacgtatgctcgacgtgtat
acacgtctgccgggctgaaaagg

Coding sequence (CDS) from alignment at sc0001713:3914..4936+

>TCONS_00037790 ID=TCONS_00037790|Name=TCONS_00037790|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001713:3914..4936+ (Clytia hemisphaerica)
atgacaaataaatggaatttttatgctaaaaacaaaacaaaaaatatgag
aTATACTTACTGGATTCTTTgccattataaaaacaatgtatCCATGAAGA
AAAGTGGCCTAAACCAGTCAAATAATCCAAGAACTTTAGcagtaagtttg
aaaaagccatttcttggtcgccatcttgattcagtgtttttctcaaCCTT
TTCTCCGAAATCTGCTGCCTCaccacgtgatcaaaacattacatcaacat
atatcaaaagaaagcttagaacctctactttccgtttctctttacttcta
cggctagcaaagaagccaatgggagaaaaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022513XLOC_022513Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037790-proteinTCONS_00037790-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037790-exon-sc0001713-1491911889:3914..4212TCONS_00037790-exon-sc0001713-1491911889:3914..4212Clytia hemisphaericaexon
TCONS_00037790-exon-sc0001713-1510915933:3914..4212TCONS_00037790-exon-sc0001713-1510915933:3914..4212Clytia hemisphaericaexon
TCONS_00037790-exon-sc0001713-1575043694:3914..4212TCONS_00037790-exon-sc0001713-1575043694:3914..4212Clytia hemisphaericaexon
TCONS_00037790-exon-sc0001713-1491911889:4288..4936TCONS_00037790-exon-sc0001713-1491911889:4288..4936Clytia hemisphaericaexon
TCONS_00037790-exon-sc0001713-1510915933:4288..4936TCONS_00037790-exon-sc0001713-1510915933:4288..4936Clytia hemisphaericaexon
TCONS_00037790-exon-sc0001713-1575043694:4288..4936TCONS_00037790-exon-sc0001713-1575043694:4288..4936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001713supercontigsc0001713:3914..4936 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.863934	1.11549	1.36045	0.62871	0.567395	0.343658	0.764067	0.889035	0	0.435139	0.799379	0.311963	0.54919	0.499378	0.298805	0.1172	0.63073	0.500925	0.345615	0.329687	0.548038	0.990648	0.477846	0.304825	0.548354	0.597905	2.25421	2.2651	2.46101	4.12177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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