TCONS_00037745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037745
Unique NameTCONS_00037745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037745 ID=TCONS_00037745|Name=TCONS_00037745|organism=Clytia hemisphaerica|type=transcript|length=828bp
NNAGACACTTTTGaatgtgtgattgttttctctGACTAGAGATACTGTGA
GCGTGTATTTAATAAACATATTGCATCTTGGCTTttaatgcaggaattgt
caCTCGAACCcactgggtgaaaacatacGATCTGACAAaaatgcaatctc
gaaatcgtaaggacggCGTTCGTCTataaggactggggatgacaacaaag
ttgcgtgattgtgtttatgaatagggcgccgtatcagtttttgactttct
ggcgcacaacaagattcttgctgtgaaattttccgcgggaggactatttt
cctcagatgtataatcttcaagtgccttcagaggtttaccgtgcacgtaa
gaaaattatgaacagctgttatcaggttaccttCAGCTGAAACAAAATGA
TAGCTTTTTTCTGAGAAAGGACGATAATTTTTTGTGCCTTCCACcacata
agtttgttttgatttttttcctttcaaaagTCACGTGATATTTTTATCTC
GATCACTCCGCCTCAACTGGAAATTCCCCTATGCACCCTAAAAGTAAttg
agttttagaaaaacaatatcAAACCGTGTTatgtggtggcggattgccCC
TTTAATAACGCCCACGCCTCTCCCGATCGATTTGTGCAGTGAGGCGGAAC
TCTTGTCTATAGTGTAAAACCTTTAGTCAGGATTAATCAATGTGCGATTT
TTATTGAGGAAATTTAACTCACCATAAATGTGGTGCATGTTCTGGACTGT
TTTGGTTGTCAACTCGACGGAATTGGAAACTTTCTCTCTGGTTATTTTTC
AGACAGTCAGACAGCTTTAAAAGTGACT
Run BLAST on NCBI

transcript from alignment at sc0001702:25907..26734

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037745 ID=TCONS_00037745|Name=TCONS_00037745|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0001702:25907..26734 (Clytia hemisphaerica)
AGTCACTTTTAAAGCTGTCTGACTGTCTGAAAAATAACCAGAGAGAAAGT
TTCCAATTCCGTCGAGTTGACAACCAAAACAGTCCAGAACATGCACCACA
TTTATGGTGAGTTAAATTTCCTCAATAAAAATCGCACATTGATTAATCCT
GACTAAAGGTTTTACACTATAGACAAGAGTTCCGCCTCACTGCACAAATC
GATCGGGAGAGGCGTGGGCGTTATTAAAGGggcaatccgccaccacatAA
CACGGTTTgatattgtttttctaaaactcaaTTACTTTTAGGGTGCATAG
GGGAATTTCCAGTTGAGGCGGAGTGATCGAGATAAAAATATCACGTGAct
tttgaaaggaaaaaaatcaaaacaaacttatgtgGTGGAAGGCACAAAAA
ATTATCGTCCTTTCTCAGAAAAAAGCTATCATTTTGTTTCAGCTGaaggt
aacctgataacagctgttcataattttcttacgtgcacggtaaacctctg
aaggcacttgaagattatacatctgaggaaaatagtcctcccgcggaaaa
tttcacagcaagaatcttgttgtgcgccagaaagtcaaaaactgatacgg
cgccctattcataaacacaatcacgcaactttgttgtcatccccagtcct
tatAGACGAACGccgtccttacgatttcgagattgcatttTTGTCAGATC
gtatgttttcacccagtgGGTTCGAGtgacaattcctgcattaaAAGCCA
AGATGCAATATGTTTATTAAATACACGCTCACAGTATCTCTAGTCagaga
aaacaatcacacattCAAAAGTGTCTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022476XLOC_022476Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037745-exon-sc0001702-1491911889:25907..26734TCONS_00037745-exon-sc0001702-1491911889:25907..26734Clytia hemisphaericaexon
TCONS_00037745-exon-sc0001702-1510915933:25907..26734TCONS_00037745-exon-sc0001702-1510915933:25907..26734Clytia hemisphaericaexon
TCONS_00037745-exon-sc0001702-1575043694:25907..26734TCONS_00037745-exon-sc0001702-1575043694:25907..26734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001702supercontigsc0001702:25907..26734 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0677	12.116	9.61481	8.86585	101.871	78.0092	39.4926	44.7772	31.0756	37.2502	36.1524	32.4824	36.6654	34.0351	29.4069	29.0006	33.3857	26.6858	38.9152	55.6881	55.3661	48.8038	29.9369	38.4623	21.6805	27.101	93.7639	76.1201	72.6671	73.5542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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