TCONS_00037738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037738
Unique NameTCONS_00037738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037738 ID=TCONS_00037738|Name=TCONS_00037738|organism=Clytia hemisphaerica|type=transcript|length=730bp
GGCAACGTGATAAAAGTCTGGCATggagtcaaaaaaaaacacacgGGGTT
GACTTTataacaccccttctcacagacctactgggaccccttcccactgg
aaaaaatggccaaaatacggtcccaagtggaaaattatactctaattttt
gccCCCACTGAAAAGACttagataagcaaatcctcgcTTTAAAATATTGT
GCTATGTTATCCATACCCACTGAAATTTCTGactcaaaaacaatggaatt
caaatccccggCGATGAAAaccatgggaatatcaatcaccatcgagtttt
ggtctgttatctttacccccactggctgaaaaaaaatcccaccgggtctg
tgagaagagggtgttttATATGATGATACCACCttgaatattattttcat
tGGTTGGTCAATTTTATTCTGAGAAAATAATTCTTGctttaatttctttc
ttccaGGTGACGTAACCTTATCTTTAGCGAAACTACCGTCACCGGCAAAG
ACAGCCAAACAGTGTAACTTGGACATGTTGGAGACGAGCGCGAGAGCTTC
CATCTTTAAGATCAAGAAGTGTCGTGGTTGGTGGCCATTCCAAGTTAACC
CTGAAGACGATGATGATCCAGATCCCGTACTTGCTGGAAAAGTGGAAGCA
GAGATCGAGTTGTTAGCTAAAGAAGATGCGGAAGCAAATCCTGTTGGAAA
GAAGCGTGAAGAACCACAACCTCTcgaaaa
Run BLAST on NCBI

transcript from alignment at sc0001702:29270..30586-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037738 ID=TCONS_00037738|Name=TCONS_00037738|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at sc0001702:29270..30586- (Clytia hemisphaerica)
GGCAACGTGATAAAAGTCTGGCATGGAGTCAAAAAAAAACACACGGGGTT
GACTTTATAACACCCCTTCTCACAGACCTACTGGGACCCCTTCCCACTGG
AAAAAATGGCCAAAATACGGTCCCAAGTGGAAAATTATACTCTAATTTTT
GCCCCCACTGAAAAGACTTAGATAAGCAAATCCTCGCTTTAAAATATTGT
GCTATGTTATCCATACCCACTGAAATTTCTGACTCAAAAACAATGGAATT
CAAATCCCCGGCGATGAAAACCATGGGAATATCAATCACCATCGAGTTTT
GGTCTGTTATCTTTACCCCCACTGGCTGAAAAAAAATCCCACCGGGTCTG
TGAGAAGAGGGTGTTTTATATGATGATACCACCTTGAATATTATTTTCAT
TGGTTGGTCAATTTTATTCTGAGAAAATAATTCTTGCTTTAATTTCTTTC
TTCCAGGTGACGTAACCTTATCTTTAGCGAAACTACCGTCACCGGCAAAG
ACAGCCAAACAGTGTAACTTGGACATGTTGGAGACGAGCGCGAGAGCTTC
CATCTTTAAGATCAAGAAGTGTCGTGGTTGGTGGCCATTCCAAGTTAACC
CTGAAGACGATGATGATCCAGATCCCGTACTTGCTGTAAGAATATCTTTA
TTCATGATATATGCACCATTGCAATGTCTTCCACGGACCCAACAGCTGAT
TGGTTGAAAGTGACGTATTGGCTGATTTTACGTCACTTACAGCCAAACAG
CTATTGGGTCCGTGATGTAATGTCAGAAGACATTGCAATGGTGCATGTCA
TGAATAGAGGTTTTTCATGTTTGGAAAGCTATGTAATTTCCGCCATTATG
GAAGCGGACGTTCGATTTGCGTAAGGGATCGCCTCTACAGATTCGAAAGT
TTGCTTCCATAATGACAGAAATTACGTAACTTAACGAAACATGAAAAAAC
CTCTAGAGATTTTATGGCGATACCGATCAGAACTACAGTGGGCATCTAAA
ACTCGAGGTTCCCTTCAAGGAAAAATCTCAAAATACTTTCAATCATTAAA
TCTCAATGTAATTTGATTAATAGAGAAGCTTTACGATCCACAAAAATTGA
CATTTTATAATGACCCTATTTTGTGAAATTTCCCCATGATATACCCATCC
TCGTTGTTTAGCCTACCCTTGAGAACGAAAAGAGTTCAATATTGTTACCT
TTCATATTTAATCTTTGTACAGGGAAAAGTGGAAGCAGAGATCGAGTTGT
TAGCTAAAGAAGATGCGGAAGCAAATCCTGTTGGAAAGAAGCGTGAAGAA
CCACAACCTCTCGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022470XLOC_022470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037738-exon-sc0001702-1575043694:29952..30586TCONS_00037738-exon-sc0001702-1575043694:29952..30586Clytia hemisphaericaexon
TCONS_00037738-exon-sc0001702-1575043694:29270..29364TCONS_00037738-exon-sc0001702-1575043694:29270..29364Clytia hemisphaericaexon
TCONS_00037738-exon-sc0001702-1510915933:29952..30586TCONS_00037738-exon-sc0001702-1510915933:29952..30586Clytia hemisphaericaexon
TCONS_00037738-exon-sc0001702-1510915933:29270..29364TCONS_00037738-exon-sc0001702-1510915933:29270..29364Clytia hemisphaericaexon
TCONS_00037738-exon-sc0001702-1491911889:29952..30586TCONS_00037738-exon-sc0001702-1491911889:29952..30586Clytia hemisphaericaexon
TCONS_00037738-exon-sc0001702-1491911889:29270..29364TCONS_00037738-exon-sc0001702-1491911889:29270..29364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001702supercontigsc0001702:29270..30586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.254425	0.334405	0.853968	0.973339	0	0.505875	0.29388	0.228529	0.143974	0.192335	0.186086	0.0490642	0.280941	0.172265	0.223445	0.39284	0.0767927	0.556985	0	0.129792	0.0936453	0.316278	0.118556	0.214272	0.370779	0.579326	0.171936	0.359593
Blast
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BLAST of TCONS_00037738 vs. Swiss-Prot (Human)
Match: FR1L6 (Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.716e-16
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 3 
Query:  456 GDVTLSLAKLPSPAKTAKQCNLDMLETSA---RASIFKIKKCRGWWPFQVNPEXXXXXXXVLAGKVEAEIELLAKEDAEANPVGKKREEPQPL 725
            G + ++L   P  AK+AK C+L   E ++   + SIF+ K+ RGWWPF  + E        L GKVEAE  L+  E+AE NPVGK R+EP+PL
Sbjct: 1709 GTLEMNLNSFPRAAKSAKACDLAKFENASEETKISIFQQKRVRGWWPFSKSKE--------LTGKVEAEFHLVTAEEAEKNPVGKARKEPEPL 1793
The following BLAST results are available for this feature:
BLAST of TCONS_00037738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FR1L61.716e-1645.16Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=... [more]
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