TCONS_00037712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037712
Unique NameTCONS_00037712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037712 ID=TCONS_00037712|Name=TCONS_00037712|organism=Clytia hemisphaerica|type=transcript|length=757bp
cggaaaccactattccaggttattctgttatgcggaaaccactattccag
gNCATGTTTATTTAACGCATCAATAGCtctatttatttgatttgatcaCG
CTATGAATATTATAGTGGTTTCCACATTCCAAGACGTTTCCGCATAGCGA
TATTAACATGAGATCTTGAGATgagttttgatgaattttcgaaTGATAAC
CAAGATACGTACAATAGAAGAAAATTTCCTGGCGTTTGTATCAACGAGAT
AATTTGAAAGCTTGTATCGTTTAGCGACCTCATCTGCTATGATGATTGAA
GATGAAAAGAATGACTTCGCTTCTGGCTTGCATTCTTTATAAGCCAATTG
ACGTTCTTGAGCACTGAGTTGAATCTTGTCCTTTGATAGGGATGGAAACA
GTGTAGAAGGTAACTTCATCCAACTGTATCCATTGATCCAGTCTGATTCT
TTATTGATGGTGTCGACAGATGAGCATCTGCGAGTTCCGATGTCGGCAAT
CACGTCTTCTGATTTGACATAGAACCATTGAGACCGGTCAGTGAAGCGTA
GAATTTGGATGACTCTGTTTCTTGTCCACTTCATCAGATCAAGGTTTGGG
TTGCAGATCCAGTATAGAGCAATTTGAGAGTCGGTGAATTTGATTGACGA
TTTATGACGGTCTCCAAATGCTAGCTTGACTGTTTGGCCAGTATGACTGT
TGAGAAGGGCTGCCATGAGCTCTCCTCTTGGTTGGGTTGTTTCCTCTAAG
ACTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00037712-protein

>TCONS_00037712-protein ID=TCONS_00037712-protein|Name=TCONS_00037712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
QVLEETTQPRGELMAALLNSHTGQTVKLAFGDRHKSSIKFTDSQIALYWI
CNPNLDLMKWTRNRVIQILRFTDRSQWFYVKSEDVIADIGTRRCSSVDTI
NKESDWINGYSWMKLPSTLFPSLSKDKIQLSAQERQLAYKECKPEAKSFF
SSSIIIADEVAKRYKLSNYLVDTNARKFSSIVRILVIIRKFIKTHLKISC
Run BLAST on NCBI

transcript from alignment at sc0001693:24078..24834

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037712 ID=TCONS_00037712|Name=TCONS_00037712|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at sc0001693:24078..24834 (Clytia hemisphaerica)
CGCAAGTCTTAGAGGAAACAACCCAACCAAGAGGAGAGCTCATGGCAGCC
CTTCTCAACAGTCATACTGGCCAAACAGTCAAGCTAGCATTTGGAGACCG
TCATAAATCGTCAATCAAATTCACCGACTCTCAAATTGCTCTATACTGGA
TCTGCAACCCAAACCTTGATCTGATGAAGTGGACAAGAAACAGAGTCATC
CAAATTCTACGCTTCACTGACCGGTCTCAATGGTTCTATGTCAAATCAGA
AGACGTGATTGCCGACATCGGAACTCGCAGATGCTCATCTGTCGACACCA
TCAATAAAGAATCAGACTGGATCAATGGATACAGTTGGATGAAGTTACCT
TCTACACTGTTTCCATCCCTATCAAAGGACAAGATTCAACTCAGTGCTCA
AGAACGTCAATTGGCTTATAAAGAATGCAAGCCAGAAGCGAAGTCATTCT
TTTCATCTTCAATCATCATAGCAGATGAGGTCGCTAAACGATACAAGCTT
TCAAATTATCTCGTTGATACAAACGCCAGGAAATTTTCTTCTATTGTACG
TATCTTGGTTATCAttcgaaaattcatcaaaactcATCTCAAGATCTCAT
GTTAATATCGCTATGCGGAAACGTCTTGGAATGTGGAAACCACTATAATA
TTCATAGCGtgatcaaatcaaataaatagaGCTATTGATGCGTTAAATAA
ACATGNcctggaatagtggtttccgcataacagaataacctggaatagtg
gtttccg

Coding sequence (CDS) from alignment at sc0001693:24078..24834

>TCONS_00037712 ID=TCONS_00037712|Name=TCONS_00037712|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0001693:24078..24834 (Clytia hemisphaerica)
CAAGTCTTAGAGGAAACAACCCAACCAAGAGGAGAGCTCATGGCAGCCCT
TCTCAACAGTCATACTGGCCAAACAGTCAAGCTAGCATTTGGAGACCGTC
ATAAATCGTCAATCAAATTCACCGACTCTCAAATTGCTCTATACTGGATC
TGCAACCCAAACCTTGATCTGATGAAGTGGACAAGAAACAGAGTCATCCA
AATTCTACGCTTCACTGACCGGTCTCAATGGTTCTATGTCAAATCAGAAG
ACGTGATTGCCGACATCGGAACTCGCAGATGCTCATCTGTCGACACCATC
AATAAAGAATCAGACTGGATCAATGGATACAGTTGGATGAAGTTACCTTC
TACACTGTTTCCATCCCTATCAAAGGACAAGATTCAACTCAGTGCTCAAG
AACGTCAATTGGCTTATAAAGAATGCAAGCCAGAAGCGAAGTCATTCTTT
TCATCTTCAATCATCATAGCAGATGAGGTCGCTAAACGATACAAGCTTTC
AAATTATCTCGTTGATACAAACGCCAGGAAATTTTCTTCTATTGTACGTA
TCTTGGTTATCAttcgaaaattcatcaaaactcATCTCAAGATCTCATGT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022446XLOC_022446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037712-proteinTCONS_00037712-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037712-exon-sc0001693-1491911889:24078..24834TCONS_00037712-exon-sc0001693-1491911889:24078..24834Clytia hemisphaericaexon
TCONS_00037712-exon-sc0001693-1510915933:24078..24834TCONS_00037712-exon-sc0001693-1510915933:24078..24834Clytia hemisphaericaexon
TCONS_00037712-exon-sc0001693-1575043694:24078..24834TCONS_00037712-exon-sc0001693-1575043694:24078..24834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001693supercontigsc0001693:24078..24834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.14253	2.97849	3.34019	1.48387	1.17915	0.585302	1.52845	1.61059	0.495063	0.916408	2.16094	1.29979	1.48686	1.26071	0.62643	0.558973	1.23418	0.754928	0.362523	2.7359	0.828227	1.04327	0.735845	0.532826	2.20088	1.60371	3.31672	2.278	2.55754	2.46829
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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