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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037691 ID=TCONS_00037691|Name=TCONS_00037691|organism=Clytia hemisphaerica|type=transcript|length=2023bpRun BLAST on NCBI transcript from alignment at sc0001689:3077..14973+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037691 ID=TCONS_00037691|Name=TCONS_00037691|organism=Clytia hemisphaerica|type=transcript|length=11897bp|location=Sequence derived from alignment at sc0001689:3077..14973+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00037691 vs. Swiss-Prot (Human)
Match: SCAI (Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2) HSP 1 Score: 346.28 bits (887), Expect = 4.063e-109 Identity = 215/551 (39.02%), Postives = 313/551 (56.81%), Query Frame = 2
Query: 125 EFNRLVSRSNELFIGLRDLPRFGVKQWQSQFVKTFDVYTKLWKFQQDKRFILEEHVGLKRHQIGEIASKVGQLYYHYYLHTSDVKYLFESLQFYSAINNRGYFSQQTGQEFDPHIAVKNLRYLARFLVVSFLVRDYFLINEVIVKLQDQAHDLL-VLQTQDEERSTEDWSAVVKEARSFLACENFFSVLANAKPLKTLQFRIKKEDAWECSKDQ---NLLLQAAIVIGGCERQAKFSELTIDMYRMLLLLE---YDIATQ------KASTESGVAMKNPSKFLLYKPSFQQLYAYFAAVFRDLQENRVMMLYISGDAI-ENKTLSSLGEVYSCGVAT-------QGAAMPAPFKSKPKQNSFLLYPEDLIPFTRKPLFLIVDSSNSQLFATVPHMFGQPLMILMAPPDIP---EHNRKRGSLFTLFLMEPXXXXXXXXXXXXXXEDGWKHCKALMKKIHTQAIDGLARQSTISGTCLVRFLGDSILRNIIGNFVITWFVLRMLKV---IDHLPTCIPTLP-TEIVESKVSLRYILDIAETLNVRSLFHEIT 1693
+F L+ +S +LF GLRDLP++G KQWQS F +TFDVYTKLWKFQQ R +L+ GLKR QIGEIASK+GQLYYHYYL TS+ YL E+ FYSAI R Y+S Q +E P + VK LRY ARF+VV L+ ++ +++ +L D+ D T+D+ +W+ V++E +F+ + VL + + R+ + A + L L A++IG C Q KFSELT+DM+RML LE ++A+Q + S + +NP K+LLYKP+F QLY + AA F++L N V+++Y+S + S G GV T G A+ +++ + L+P DL PFTRKPLF+IVDSSNS + ++FGQPL+ L++P P + +RGSLFTLFL PL+A + L+ W+ C+ ++KI+ L +I ++F GD LR ++ F+ +RM K+ + P P LP E VE+ ++IL++A L+VR++F E T
Sbjct: 61 DFCYLLDKSKQLFNGLRDLPQYGQKQWQSYFGRTFDVYTKLWKFQQQHRQVLDNRYGLKRWQIGEIASKIGQLYYHYYLRTSETSYLNEAFSFYSAIRQRSYYS-QVNKEDRPELVVKKLRYYARFIVVCLLLNKMDVVKDLVKELSDEIEDYTHRFNTEDQ----VEWNLVLQEVAAFIEADPVM-VLNDDNTIVITSNRLAETGAPLLEQGMIVGQLSLADALIIGNCNNQVKFSELTVDMFRMLQALEREPMNLASQMNKPGMQESADKPTRRENPHKYLLYKPTFSQLYTFLAASFKELPANSVLLIYLSATGVFPTGRSDSEGPYDFGGVLTNSNRDIINGDAIHK--RNQSHKEMHCLHPGDLYPFTRKPLFIIVDSSNSVAYKNFTNLFGQPLVCLLSPTAYPKALQDQSQRGSLFTLFLNNPLMAFLFVSGLSSMRRGLWEKCQEYLRKINRDIAQLLTHSRSID-QAFLQFFGDEFLRLLLTRFIFCSATMRMHKIFRETRNYPESYPQLPRDETVENPHLQKHILELASILDVRNVFFENT 602 The following BLAST results are available for this feature:
BLAST of TCONS_00037691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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