TCONS_00037656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037656
Unique NameTCONS_00037656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037656 ID=TCONS_00037656|Name=TCONS_00037656|organism=Clytia hemisphaerica|type=transcript|length=618bp
ATTTAGTGTAAATCCAGGTAAATCGGTTCCAAAAAGGAAGActttaaatt
gacaaaaaatcagCTGTAGGATTTTACCTTCTTTGACAATTGGTGTGAGT
CCTGTCGAAGCCTGAGTGCTTGCTGCTATAAGTAAATAATACATTCTTAA
GTTAACCATACTGATTCTAATaacttgaaaatcattgaaaacttATATAA
ACACAATGCTACTGCATGCTAAGGACCGCTTGAGCTTTCtgccttaaaaa
atattttaattaccTTTGACCTTAGGTGataaaatgttgaaatacaTTTG
TAGTAAAAAAACTAAGCATAATATTCCTACCTTCCTTTATAGGGGACATG
TTGCTTTCGGTTAACGATTCTTCCAAATCGTGATTTGGCTCTTCTTCTTC
TAAGAGATAAATTTAGACATTATGTAAATTGCAGCTGTCAAGCAAAATCG
GCGTTAACAGCTCCAGATGTAAAATGATGTATCTGGTTCACTTATTCAAC
tgCAAGTATCGTTACCTTTTGGGTTTGCCTTTTGATGGTTTCCAGGTGTC
GTCACTTAAAAAGTaggtttaatgtttttttttaattataaggTGTGAGC
Tttcatttaagattttaa
Run BLAST on NCBI

transcript from alignment at sc0001678:17996..19326-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037656 ID=TCONS_00037656|Name=TCONS_00037656|organism=Clytia hemisphaerica|type=transcript|length=1331bp|location=Sequence derived from alignment at sc0001678:17996..19326- (Clytia hemisphaerica)
ATTTAGTGTAAATCCAGGTAAATCGGTTCCAAAAAGGAAGACTTTAAATT
GACAAAAAATCAGCTGTAGGATTTTACCTTCTTTGACAATTGGTGTGAGT
CCTGTCGAAGCCTGAGTGCTTGCTGCTATAAGTAAATAATACATTCTTAA
GTTAACCATACTGATTCTAATAACTTGAAAATCATTGAAAACTTATATAA
ACACAATGCTACTGCATGCTAAGGACCGCTTGAGCTTTCTGCCTTAAAAA
ATATTTTAATTACCTTTGACCTTAGGTGATAAAATGTTGAAATACATTTG
TAGTAAAAAAACTAAGCATAATATTCCTACCTTCCTTTATAGGGGACATG
TTGCTTTCGGTTAACGATTCTTCCAAATCGTGATTTGGCTCTTCTTCTTC
TAAGAGATAAATTTAGACATTATGTAAATTGCAGTAAGTATCATCTTCTA
TTTTATAACTCCGGACTCCAATGAACATATAAAGATCAATATGACAGTGT
TTATTCATTTGTGAACTGATCAAAAGAGATCATTATCTTGTATTGATGAG
CTTCTATTCTATTTCACCAGTTAATGTCAAATAATATGAATATGATATAA
ACTTATGGTCTACCCATACTCAACATCTAGTTCTAGTTTTATATTTGCAT
AAGACAAAAAATCTCCTTACCATCATTTTCAGTACGATACTCTCCATCAC
TGCTCAGCTCATCTGTATGTAGAAAAAAAAATTGCTTTATTGTAACATTT
TCAGGGGTGACTTTCAATATTACTGTATTGGTTTTATAGGCTGTCAAGCA
AAATCGGCGTTAACAGCTCCAGATGTAAAATGATGTATCTGGTTCACTTA
TTCAACGTAAGTTAAGTCCTATTGTTTATGATGTTTGGAAAATTTAATTA
ATAGAACTAGAAATTAAAAAAACATTCGATCCTCAAAGCCTGAGTTCTAG
ATGAGTAAAGATAGTTTAGATAGTTAAAACATGACTTACGTCGAAATACA
TGGTCATCATTAACTTTCAAAAACTCTACATCATCTTCAAACACCAAATC
TGTTAAATTGTCTGAAAAAAAATGATTTAAATGATATTATAAAAAATATG
AAACAAAAATATTAAGGCTGGTTTTGATTTTTTACCCAACCCCTATCAAC
TTGTTTACATATTTCAATTTCTTTAACAATTAAATTGTATTTAAATTTTC
TTAAAATTTTCAGTGCAAGTATCGTTACCTTTTGGGTTTGCCTTTTGATG
GTTTCCAGGTGTCGTCACTTAAAAAGTAGGTTTAATGTTTTTTTTTAATT
ATAAGGTGTGAGCTTTCATTTAAGATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022405XLOC_022405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037656-exon-sc0001678-1575043694:18894..19326TCONS_00037656-exon-sc0001678-1575043694:18894..19326Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1575043694:18471..18537TCONS_00037656-exon-sc0001678-1575043694:18471..18537Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1575043694:17996..18113TCONS_00037656-exon-sc0001678-1575043694:17996..18113Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1510915933:18894..19326TCONS_00037656-exon-sc0001678-1510915933:18894..19326Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1510915933:18471..18537TCONS_00037656-exon-sc0001678-1510915933:18471..18537Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1510915933:17996..18113TCONS_00037656-exon-sc0001678-1510915933:17996..18113Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1491911889:18894..19326TCONS_00037656-exon-sc0001678-1491911889:18894..19326Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1491911889:18471..18537TCONS_00037656-exon-sc0001678-1491911889:18471..18537Clytia hemisphaericaexon
TCONS_00037656-exon-sc0001678-1491911889:17996..18113TCONS_00037656-exon-sc0001678-1491911889:17996..18113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001678supercontigsc0001678:17996..19326 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.092437	0.111521	0.104405	0	0.0905416	0	0.11554	0.0576898	0	0	0	0	0	0	0	0	0	0.0994574	0	0	0.0831179	0	0	0	0.196183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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