TCONS_00037499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037499
Unique NameTCONS_00037499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037499 ID=TCONS_00037499|Name=TCONS_00037499|organism=Clytia hemisphaerica|type=transcript|length=723bp
AACTTTCCTCCacaagttagtacagtgtactaaaaagggtggtggtctaa
ttttttgaaaaaaatccaaaaatcaagttagtaccctatggtccAGTACC
TGACTTGGTACCCCCCTGGTATTGCAACAAATTACATGCGAGTTCATCCC
TCTTGACCTCCTATCAGAGCTCGAATCGCTACTCCTTTAAATATGGACGA
CGAGATCTATACGATGGTGCAATAGGTGACCATCGGCATCGCACAGAGGT
TTACAAGTAGGATCAACTTTGTAAAATCATGGTGATAATAATCTTGAATA
GACTTAAAGACTGACCGACCAGCAGCAAGGATTTAGACGGGATAGAGGAA
CCGCAGACGGCATATATGTGACAAAAAGACTTCAACAAATCTCGGACAAA
ACACAAAAGCCATTCTATCTCCTATTCGTCGATTTGAGCTCCGCGCTCGA
CCACGTTGTAAGAAATTGGCTCTTCGAATCCATCTACCAGAGATTTCCTG
AGCAAGTTGAGCCTACCCTAATAAATCTGCTCGAATCATTGtatcataaa
aaaacaacatcattAGCACAAACTCCAGATGATGTTTTCGAGCTTCGACC
GTTCGACaaggggggggggcagaaaCCCCATCACTATACAACCTTTATAT
GGATTATGTCATGCGTGTGTTAATGCAAAACTATGAAGAGAACAATGCTA
AATTTCTTAAACTGAAGTACAAA
Run BLAST on NCBI

transcript from alignment at sc0001644:40041..40763

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037499 ID=TCONS_00037499|Name=TCONS_00037499|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at sc0001644:40041..40763 (Clytia hemisphaerica)
TTTGTACTTCAGTTTAAGAAATTTAGCATTGTTCTCTTCATAGTTTTGCA
TTAACACACGCATGACATAATCCATATAAAGGTTGTATAGTGATGGGGtt
tctgccccccccccttGTCGAACGGTCGAAGCTCGAAAACATCATCTGGA
GTTTGTGCTaatgatgttgtttttttatgataCAATGATTCGAGCAGATT
TATTAGGGTAGGCTCAACTTGCTCAGGAAATCTCTGGTAGATGGATTCGA
AGAGCCAATTTCTTACAACGTGGTCGAGCGCGGAGCTCAAATCGACGAAT
AGGAGATAGAATGGCTTTTGTGTTTTGTCCGAGATTTGTTGAAGTCTTTT
TGTCACATATATGCCGTCTGCGGTTCCTCTATCCCGTCTAAATCCTTGCT
GCTGGTCGGTCAGTCTTTAAGTCTATTCAAGATTATTATCACCATGATTT
TACAAAGTTGATCCTACTTGTAAACCTCTGTGCGATGCCGATGGTCACCT
ATTGCACCATCGTATAGATCTCGTCGTCCATATTTAAAGGAGTAGCGATT
CGAGCTCTGATAGGAGGTCAAGAGGGATGAACTCGCATGTAATTTGTTGC
AATACCAGGGGGGTACCAAGTCAGGTACTggaccatagggtactaacttg
atttttggatttttttcaaaaaattagaccaccaccctttttagtacact
gtactaacttgtGGAGGAAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022265XLOC_022265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037499-exon-sc0001644-1491911889:40041..40763TCONS_00037499-exon-sc0001644-1491911889:40041..40763Clytia hemisphaericaexon
TCONS_00037499-exon-sc0001644-1510915933:40041..40763TCONS_00037499-exon-sc0001644-1510915933:40041..40763Clytia hemisphaericaexon
TCONS_00037499-exon-sc0001644-1575043694:40041..40763TCONS_00037499-exon-sc0001644-1575043694:40041..40763Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001644supercontigsc0001644:40041..40763 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141621	0.134616	0.236027	0.230936	0.0933789	0.073554	0.0889702	0.249231	0.0581642	0.436893	0	0.138752	0.278399	0.24264	0.826671	0.468322	0.363977	0.47798	0	0.460676	0.201583	0	0	0.144375	0.148812	0.132277	0	1.14017	1.30839	0.390267
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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