TCONS_00037487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037487
Unique NameTCONS_00037487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037487 ID=TCONS_00037487|Name=TCONS_00037487|organism=Clytia hemisphaerica|type=transcript|length=246bp
TAAAGGCAATGAGCTAAAAAGCACTGACACAGCAAAAGATACACCTGTAG
attttgagatgGTTACACAGAAGGACAAGATCAATGAGGTATCAAACATC
GAAAAAACCAAAGCCACATTAACAAGCAAACCATGGCAATCATCGATTCA
CGAAGAATGTAGCAACAACATGGTAGAGGCAATGGGCACCTCGTATTTAG
AAAaagagggtttaaaatcttaCACCACATTGATGAAAAAGCCCAG
Run BLAST on NCBI

transcript from alignment at sc0001642:70..628+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037487 ID=TCONS_00037487|Name=TCONS_00037487|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at sc0001642:70..628+ (Clytia hemisphaerica)
TAAAGGCAATGAGCTAAAAAGCACTGACACAGCAAAAGATACACCTGTAG
GTAACATAAGCAGTTTTTTTAGAAAGATCTTCCTTGACTTTGGATTCAAC
CTTGACAGAATAGCAAAAATTATGAACTAAGTTTTCTctacattttattt
tataataaaCATAAACAGTTActcagaatttttcattttcaagattttga
gatgGTTACACAGAAGGACAAGATCAATGAGGTATCAAACATCGAAAAAA
CCAAAGCCACATTAACAAGCAAACCATGTGAGTATAATTTAAGTACAAAG
AAATTGAACTCAACTGTATTGAAATAATGTTCAATTGGTTTTTGTCACCC
CCAACAAATGCTGAAAGTTATTGACCAAAACTTGTGGATATAGGCTATTT
CTACCCTCACCTGTTAGCTAATGCATATACCTTGTATCTGATTTTAGGGC
AATCATCGATTCACGAAGAATGTAGCAACAACATGGTAGAGGCAATGGGC
ACCTCGTATTTAGAAAaagagggtttaaaatcttaCACCACATTGATGAA
AAAGCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022253XLOC_022253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037487-exon-sc0001642-1491911889:70..119TCONS_00037487-exon-sc0001642-1491911889:70..119Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1510915933:70..119TCONS_00037487-exon-sc0001642-1510915933:70..119Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1575043694:70..119TCONS_00037487-exon-sc0001642-1575043694:70..119Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1491911889:263..346TCONS_00037487-exon-sc0001642-1491911889:263..346Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1510915933:263..346TCONS_00037487-exon-sc0001642-1510915933:263..346Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1575043694:263..346TCONS_00037487-exon-sc0001642-1575043694:263..346Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1491911889:517..628TCONS_00037487-exon-sc0001642-1491911889:517..628Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1510915933:517..628TCONS_00037487-exon-sc0001642-1510915933:517..628Clytia hemisphaericaexon
TCONS_00037487-exon-sc0001642-1575043694:517..628TCONS_00037487-exon-sc0001642-1575043694:517..628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001642supercontigsc0001642:70..628 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.904934	0	0.870555	0	0	0	0	0	0.544068	0.543312	1.6927	0.927755	1.49343	0	0.628575	0	0	0	0	0	0	1.75419	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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