TCONS_00037470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037470
Unique NameTCONS_00037470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037470 ID=TCONS_00037470|Name=TCONS_00037470|organism=Clytia hemisphaerica|type=transcript|length=517bp
TGAATTATATGTCAAAAGATCTTTGAAGGCTAAGAAGTCGATTGAAGACG
ATTCTGAGAGCTATGTTGATCTTGTTAAAAGTGAATCTTTCGTTTGGTCG
TCTGGTTTTAATTGTCAATTGCCTATGGAAAGTGAATATTTAAATGCAGT
TACACCATGTAAAAATGTGATTTGTTCTACGCGTACAATATCTCCGTACA
AGAAACAAAGTTGGTTCAATGAAACAGAGCGACATTTTAAAGACATTCCA
CCAGACCTTAACGTTCTACCACCCCGGTAAAGAGACCCGCCTTGACAAAC
TAATGTAAACAAACGTTTGAATTTTCACTATCAACACTGGTGGATGATCA
ATTGAGAATGGTATAGATTCTGCACCTAAGAGCCAACGAAATTTTAGATa
tcaagatttgaaaaatcttgaggGGAGCCATATGTTGGTGAAGAAAACTG
TTCCATCGTAATGAACATTTGATTGCCCGTGCTGTTTATATTtctggctg
cgtttagaccaactggc
Run BLAST on NCBI

transcript from alignment at sc0001639:14107..14623

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037470 ID=TCONS_00037470|Name=TCONS_00037470|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at sc0001639:14107..14623 (Clytia hemisphaerica)
gccagttggtctaaacgcagccagaAATATAAACAGCACGGGCAATCAAA
TGTTCATTACGATGGAACAGTTTTCTTCACCAACATATGGCTCCcctcaa
gatttttcaaatcttgatATCTAAAATTTCGTTGGCTCTTAGGTGCAGAA
TCTATACCATTCTCAATTGATCATCCACCAGTGTTGATAGTGAAAATTCA
AACGTTTGTTTACATTAGTTTGTCAAGGCGGGTCTCTTTACCGGGGTGGT
AGAACGTTAAGGTCTGGTGGAATGTCTTTAAAATGTCGCTCTGTTTCATT
GAACCAACTTTGTTTCTTGTACGGAGATATTGTACGCGTAGAACAAATCA
CATTTTTACATGGTGTAACTGCATTTAAATATTCACTTTCCATAGGCAAT
TGACAATTAAAACCAGACGACCAAACGAAAGATTCACTTTTAACAAGATC
AACATAGCTCTCAGAATCGTCTTCAATCGACTTCTTAGCCTTCAAAGATC
TTTTGACATATAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022236XLOC_022236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037470-exon-sc0001639-1491911889:14107..14623TCONS_00037470-exon-sc0001639-1491911889:14107..14623Clytia hemisphaericaexon
TCONS_00037470-exon-sc0001639-1510915933:14107..14623TCONS_00037470-exon-sc0001639-1510915933:14107..14623Clytia hemisphaericaexon
TCONS_00037470-exon-sc0001639-1575043694:14107..14623TCONS_00037470-exon-sc0001639-1575043694:14107..14623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001639supercontigsc0001639:14107..14623 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115187	0.112326	0	0	0.310674	0	0	0.138642	0.388265	0	0	0	0	0	0	0	0.778237	0.443149	0	0	1.00233	1.14077	0.132072	0.120072	0.494687	2.20748	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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