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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037460 ID=TCONS_00037460|Name=TCONS_00037460|organism=Clytia hemisphaerica|type=transcript|length=2414bpRun BLAST on NCBI protein sequence of TCONS_00037460-protein >TCONS_00037460-protein ID=TCONS_00037460-protein|Name=TCONS_00037460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=645bp LSRSSQGSPDWTCIIAGYSTGYIRMYMSNGSLLLSQFLHDGPVLNIVIRTRun BLAST on NCBI transcript from alignment at sc0001637:8090..48189+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037460 ID=TCONS_00037460|Name=TCONS_00037460|organism=Clytia hemisphaerica|type=transcript|length=40100bp|location=Sequence derived from alignment at sc0001637:8090..48189+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001637:8090..48189+ >TCONS_00037460 ID=TCONS_00037460|Name=TCONS_00037460|organism=Clytia hemisphaerica|type=CDS|length=32946bp|location=Sequence derived from alignment at sc0001637:8090..48189+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00037460 vs. Swiss-Prot (Human)
Match: RBGPR (Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1) HSP 1 Score: 419.083 bits (1076), Expect = 4.027e-128 Identity = 239/576 (41.49%), Postives = 343/576 (59.55%), Query Frame = 2
Query: 8 RSSQGSPDWTCIIAGYSTGYIRMYMSNGSLLLSQFLHDGPVLNIVIRTK--TSFASSSDQVDELIILYSKAIVTIDGFSLYQSLRACRNQLAKAQASYGSESIQPPPLAYKKWKSTGQKGVTDCVSCGVTSPCFFDRLQTASVIGGQQATVKGSSPAFNRFLSTGTEPFLCYYQALEGSNQPILSDVAMAYASKLTSAVFSSVKNFTMGSGWFGGGKQAQSPEKKDVRPNVERGTSLPARFGLFDQHRITSSVKLSPIGNLAIVTDTFNRVSLVDISTGIVLRLWKGYRDAECGWIVVEEEEDQQ------------SDAPSLKRRALFVVIYAPKRGILEIYLTEHGARVGAFNVGKNCKLICPTYQCLGQIRATT-NINSNEFQQCFLLQEDGSIKTIHVPFHCSLSNVHSIRAKDAHQLKRVATSLDKSKGRANNNEEIVKTMVSIILDIQAPNMQKKAVELMMNTTGLRPKFLESSLTLICDGLQKAMNSRESVEEDLEYQAEKSDLLLYCHAQKHLINLYLAIENIQEDKSSLDSMVTEDLPGDRQQTVAELLHVTGTEAKDFLEMLDRYK 1690
RSS G PDWTCI+ G+++GY+R Y NG LLL+Q L++ PVL + RT ++Q +EL ILY AIVTIDGFSL+QSLRACRNQ+AKA AS G+E+IQPPPLAYKKW + D S G+ + FD+++TAS IGG A +K S PA +++++ G+ PF ++ ALEGS QP+LS VA+A ASKLTSA+F++ SGW G + + + +P VE T L RFGL D R S+ LSP LA VTD F RV L+D++ GI +R+WKGYRDA+ GWI E+ ++ S PS R A F+VIYAP+RGILE++ T+ G RVGAFNVGK+C+L+ P Y+ +G T+ + +Q C + GS+KT++VPFH +LS+ S RAKD H +K++A L K ++ N + + + +ILDI+ P +K+A+E ++ + L L + + D L+ ESV+E LL +C + L+ LY ++ + LD+ +++ +A LL + E +L++YK
Sbjct: 145 RSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAAS-GNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNA------ASGWLGWKSKHEEEAVQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPS--RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKKLAALL---KTKSPNLDLVETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKS--QELESVDE---------GLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-------DLALLLRLDEKELLKLQALLEKYK 690 The following BLAST results are available for this feature:
BLAST of TCONS_00037460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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