TCONS_00037460-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00037460-protein
Unique Name	TCONS_00037460-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	645

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00037460-protein ID=TCONS_00037460-protein|Name=TCONS_00037460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=645bp
LSRSSQGSPDWTCIIAGYSTGYIRMYMSNGSLLLSQFLHDGPVLNIVIRT
KTSFASSSDQVDELIILYSKAIVTIDGFSLYQSLRACRNQLAKAQASYGS
ESIQPPPLAYKKWKSTGQKGVTDCVSCGVTSPCFFDRLQTASVIGGQQAT
VKGSSPAFNRFLSTGTEPFLCYYQALEGSNQPILSDVAMAYASKLTSAVF
SSVKNFTMGSGWFGGGKQAQSPEKKDVRPNVERGTSLPARFGLFDQHRIT
SSVKLSPIGNLAIVTDTFNRVSLVDISTGIVLRLWKGYRDAECGWIVVEE
EEDQQSDAPSLKRRALFVVIYAPKRGILEIYLTEHGARVGAFNVGKNCKL
ICPTYQCLGQIRATTNINSNEFQQCFLLQEDGSIKTIHVPFHCSLSNVHS
IRAKDAHQLKRVATSLDKSKGRANNNEEIVKTMVSIILDIQAPNMQKKAV
ELMMNTTGLRPKFLESSLTLICDGLQKAMNSRESVEEDLEYQAEKSDLLL
YCHAQKHLINLYLAIENIQEDKSSLDSMVTEDLPGDRQQTVAELLHVTGT
EAKDFLEMLDRYKFICLDDFEATTKQKHHQKKTTSSKKLDINEFLSCFRI
ENISHHPQQKRFSKEASSSSSQHFKVILDDKVVKELTLSLEHFEG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_022229	XLOC_022229	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00037460	TCONS_00037460	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR032839	RAB3GAP_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 6..638 e-value: 1.4E-7 score: 29.8
IPR032839	Rab3-GAP regulatory subunit, N-terminal	PFAM	PF14655	RAB3GAP2_N	coord: 3..351 e-value: 1.4E-115 score: 386.7

Blast

[Close]

BLAST of TCONS_00037460-protein vs. Swiss-Prot (Human)
Match: RBGPR (Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 7.178e-132
Identity = 239/576 (41.49%), Postives = 343/576 (59.55%), Query Frame = 0

Query:    3 RSSQGSPDWTCIIAGYSTGYIRMYMSNGSLLLSQFLHDGPVLNIVIRTK--TSFASSSDQVDELIILYSKAIVTIDGFSLYQSLRACRNQLAKAQASYGSESIQPPPLAYKKWKSTGQKGVTDCVSCGVTSPCFFDRLQTASVIGGQQATVKGSSPAFNRFLSTGTEPFLCYYQALEGSNQPILSDVAMAYASKLTSAVFSSVKNFTMGSGWFGGGKQAQSPEKKDVRPNVERGTSLPARFGLFDQHRITSSVKLSPIGNLAIVTDTFNRVSLVDISTGIVLRLWKGYRDAECGWIVVEEEEDQQ------------SDAPSLKRRALFVVIYAPKRGILEIYLTEHGARVGAFNVGKNCKLICPTYQCLGQIRATT-NINSNEFQQCFLLQEDGSIKTIHVPFHCSLSNVHSIRAKDAHQLKRVATSLDKSKGRANNNEEIVKTMVSIILDIQAPNMQKKAVELMMNTTGLRPKFLESSLTLICDGLQKAMNSRESVEEDLEYQAEKSDLLLYCHAQKHLINLYLAIENIQEDKSSLDSMVTEDLPGDRQQTVAELLHVTGTEAKDFLEMLDRYK 563
            RSS G PDWTCI+ G+++GY+R Y  NG LLL+Q L++ PVL +  RT         ++Q +EL ILY  AIVTIDGFSL+QSLRACRNQ+AKA AS G+E+IQPPPLAYKKW       + D  S G+ +   FD+++TAS IGG  A +K S PA +++++ G+ PF  ++ ALEGS QP+LS VA+A ASKLTSA+F++       SGW G   + +    +  +P VE  T L  RFGL D  R   S+ LSP   LA VTD F RV L+D++ GI +R+WKGYRDA+ GWI   E+  ++            S  PS  R A F+VIYAP+RGILE++ T+ G RVGAFNVGK+C+L+ P Y+ +G    T+ +     +Q C +    GS+KT++VPFH +LS+  S RAKD H +K++A  L   K ++ N + +   +  +ILDI+ P  +K+A+E ++ +  L    L +    + D L+      ESV+E          LL +C  +  L+ LY ++  +      LD+  +++        +A LL +   E      +L++YK
Sbjct:  145 RSSTGRPDWTCIVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAAIVTIDGFSLFQSLRACRNQVAKAAAS-GNENIQPPPLAYKKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNA------ASGWLGWKSKHEEEAVQKQKPKVEPATPLAVRFGLPDSRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHERVPEKADFSPFGNSQGPS--RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLNNVTSQSWQPQTYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMHLVKKLAALL---KTKSPNLDLVETEIKELILDIKYPATKKQALESILASERLPFSCLRNITQTLMDTLKS--QELESVDE---------GLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-------DLALLLRLDEKELLKLQALLEKYK 690

The following BLAST results are available for this feature:

BLAST of TCONS_00037460-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00037460-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBGPR	7.178e-132	41.49	Rab3 GTPase-activating protein non-catalytic subun...	[more]

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TCONS_00037460-protein (polypeptide) - C. hemisphaerica