TCONS_00037447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037447
Unique NameTCONS_00037447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037447 ID=TCONS_00037447|Name=TCONS_00037447|organism=Clytia hemisphaerica|type=transcript|length=369bp
GCTCCATTATTTGTATTTACAAAATCAATGTCATAAAATATTGCACTTCC
GGCTACAGTCATGTTTGTATTCACTCGTTATCAGACTTCCAATCGCTGGT
CTCAATAACATAATTTTAGACGTTCTAAGGACGCCTTTTAGACGTCCTGT
AAAAATCAAGTCCGTTAAAGACGTCTTAAGGACGTCGCAATTGGACGGGG
ACGGGCTTTGGACGGGCGGACGTGATATGGACGTCATATAGTCGTCCTCC
GGACTTTCTGTGCCCACTNAAAAACAAGTCCGTTAAAGACGTCTTAAGGA
CGTCGCAATTGGACGGGGACGGGCTTTGGACGGGCGGACGTGATATGGAC
GTCATATAGTCGTCCTCCG
Run BLAST on NCBI

transcript from alignment at sc0001631:1609..1977

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037447 ID=TCONS_00037447|Name=TCONS_00037447|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at sc0001631:1609..1977 (Clytia hemisphaerica)
CGGAGGACGACTATATGACGTCCATATCACGTCCGCCCGTCCAAAGCCCG
TCCCCGTCCAATTGCGACGTCCTTAAGACGTCTTTAACGGACTTGTTTTT
NAGTGGGCACAGAAAGTCCGGAGGACGACTATATGACGTCCATATCACGT
CCGCCCGTCCAAAGCCCGTCCCCGTCCAATTGCGACGTCCTTAAGACGTC
TTTAACGGACTTGATTTTTACAGGACGTCTAAAAGGCGTCCTTAGAACGT
CTAAAATTATGTTATTGAGACCAGCGATTGGAAGTCTGATAACGAGTGAA
TACAAACATGACTGTAGCCGGAAGTGCAATATTTTATGACATTGATTTTG
TAAATACAAATAATGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022217XLOC_022217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037447-exon-sc0001631-1491911889:1609..1977TCONS_00037447-exon-sc0001631-1491911889:1609..1977Clytia hemisphaericaexon
TCONS_00037447-exon-sc0001631-1510915933:1609..1977TCONS_00037447-exon-sc0001631-1510915933:1609..1977Clytia hemisphaericaexon
TCONS_00037447-exon-sc0001631-1575043694:1609..1977TCONS_00037447-exon-sc0001631-1575043694:1609..1977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001631supercontigsc0001631:1609..1977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.212186	1.29736	0	0	0	0.472584	0.285076	0.53377	1.03335	0.540227	0.354491	1.66061	1.02033	0.501596	1.80028	0.780018	2.03615	2.13096	0	0	3.62707	4.72937	0.254238	0.610694	2.38068	0.84988	0.777894	0.324484	0.24611	0.250747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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