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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037445 ID=TCONS_00037445|Name=TCONS_00037445|organism=Clytia hemisphaerica|type=transcript|length=2090bpRun BLAST on NCBI protein sequence of TCONS_00037445-protein >TCONS_00037445-protein ID=TCONS_00037445-protein|Name=TCONS_00037445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp MMCEAYKRGVYGARYTWFVSESVTTLLGTRQFHDVDINATCNYAHVLKAMRun BLAST on NCBI transcript from alignment at sc0001631:32508..46667+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037445 ID=TCONS_00037445|Name=TCONS_00037445|organism=Clytia hemisphaerica|type=transcript|length=14160bp|location=Sequence derived from alignment at sc0001631:32508..46667+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001631:32508..46667+ >TCONS_00037445 ID=TCONS_00037445|Name=TCONS_00037445|organism=Clytia hemisphaerica|type=CDS|length=10584bp|location=Sequence derived from alignment at sc0001631:32508..46667+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00037445 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 7.435e-33 Identity = 128/469 (27.29%), Postives = 216/469 (46.06%), Query Frame = 1
Query: 616 RTAPSFVQNNYARVRVIQNLGWRRVAIVFDDKQNYEKVE-DLTEQFKQANIDVVATERF--EPKGSYEHFDAVYDNLNKSDARIIVGFFLTDEGAWAMMCEAYKRGVYGARYTWFVSESVTTLLGTRQFHDVDINATCNYAHVLKAMDKSIFITTVNLRTDNVKSIANLSTSFIWQMIKNQDLKHIIDHNTTHPHDPAPTSGRPNILGARAYDAVYTAALALDRLIKKKGNSSLLTK-----YGDRKKALEITRELLNSNFEGITGLVKFGGPTKDDSLGHVIINQWKSLLPSPFGKLTQVAYFNPAENEMDIKPINDTIF-------TDNILRLDGIQTARIELYSSRHVLYIIWTLIGLSVLLALTFFIINMKYRTVRLIKMSSPNMNSGIIXXXXXXXXXXXXXXXDTRFISASKQLSFCYVFPFLMSIGFTFLFGCLFSKTWRVYKIFTAAPKMVKVNTAALRDE 1977
RT PS N A ++++++ W+RV + D Q + +V DLT +I++ TE F +P S + L +D RII+G F + A + C AY+ +YG++Y W + Q H ++ C ++L AM+ I + L + +K+I+ + + N+ + P+ AYD ++ A L R ++ SS + Y D I + +NF G+TG V F + +G + Q++ + +V +N + ++I INDTI D + L+ ++ + LYS I+ L L +++A F N+K R +LIKMSSP MN+ II G +L Y +FL+GLD F+S + C V +++++G+T FG +F+KTWRV+ IF K VK+ ++D+
Sbjct: 174 RTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVK-------KLKGNDVRIILGQFDQNMAA-KVFCCAYEENMYGSKYQWIIPGWYEPSWW-EQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR-----------------SGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF---RNGERMGTIKFTQFQD------SREVKVGEYNAVADTLEI--INDTIRFQGSEPPKDKTIILEQLRKISLPLYS------ILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIF----KNVKMKKKIIKDQ 595 HSP 2 Score: 33.4982 bits (75), Expect = 7.435e-33 Identity = 21/78 (26.92%), Postives = 34/78 (43.59%), Query Frame = 3
Query: 339 VRALYKFMETGPVKQILLGPAFSTVNKRIIPFVTNLALPQVSFSARKRFNERREIDGRLVPTPLEEKRYPYLVRTTPS 572
++A Y ++ GP ++ G +V I + L Q+SF+A P ++K+YPY RT PS
Sbjct: 114 LKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAAT-------------TPVLADKKKYPYFFRTVPS 178 The following BLAST results are available for this feature:
BLAST of TCONS_00037445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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