TCONS_00037445-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00037445-protein
Unique NameTCONS_00037445-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00037445-protein ID=TCONS_00037445-protein|Name=TCONS_00037445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MMCEAYKRGVYGARYTWFVSESVTTLLGTRQFHDVDINATCNYAHVLKAM
DKSIFITTVNLRTDNVKSIANLSTSFIWQMIKNQDLKHIIDHNTTHPHDP
APTSGRPNILGARAYDAVYTAALALDRLIKKKGNSSLLTKYGDRKKALEI
TRELLNSNFEGITGLVKFGGPTKDDSLGHVIINQWKSLLPSPFGKLTQVA
YFNPAENEMDIKPINDTIFTDNILRLDGIQTARIELYSSRHVLYIIWTLI
GLSVLLALTFFIINMKYRTVRLIKMSSPNMNSGIIFGCLLLYTMLFLYGL
DTRFISASKQLSFCYVFPFLMSIGFTFLFGCLFSKTWRVYKIFTAAPKMV
KVNTAALRDEXPGGHWVCGLTVCAGQKLAFKIVPLQCSKNQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_022216XLOC_022216Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00037445TCONS_00037445Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
IPR001828ANF_lig-bd_rcpt
IPR028082Peripla_BP_I
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01176GABABRECEPTRcoord: 114..126
score: 57.34
coord: 333..350
score: 35.35
coord: 281..302
score: 38.84
coord: 242..265
score: 21.59
coord: 314..333
score: 30.91
NoneNo IPR availableGENE3D3.40.50.2300coord: 1..234
e-value: 1.5E-11
score: 43.9
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 255..350
e-value: 3.6E-19
score: 69.4
IPR017978GPCR family 3, C-terminalPROSITEPS50259G_PROTEIN_RECEP_F3_4coord: 249..346
score: 9.989
IPR001828Receptor, ligand binding regionPFAMPF01094ANF_receptorcoord: 2..168
e-value: 3.4E-10
score: 39.4
IPR028082Periplasmic binding protein-like ISUPERFAMILY53822Periplasmic binding protein-like Icoord: 2..205

Blast
[Close]
BLAST of TCONS_00037445-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.529e-30
Identity = 99/372 (26.61%), Postives = 169/372 (45.43%), Query Frame = 0 
Query:    1 MMCEAYKRGVYGARYTWFVSESVTTLLGTRQFHDVDINATCNYAHVLKAMDKSIFITTVNLRTDNVKSIANLSTSFIWQMIKNQDLKHIIDHNTTHPHDPAPTSGRPNILGARAYDAVYTAALALDRLIKKKGNSSLLTK-----YGDRKKALEITRELLNSNFEGITGLVKFGGPTKDDSLGHVIINQWKSLLPSPFGKLTQVAYFNPAENEMDIKPINDTIF-------TDNILRLDGIQTARIELYSSRHVLYIIWTLIGLSVLLALTFFIINMKYRTVRLIKMSSPNMNSGIIFGCLLLYTMLFLYGLDTRFISASKQLSFCYVFPFLMSIGFTFLFGCLFSKTWRVYKIFTAAPKMVKVNTAALRDE 360
            + C AY+  +YG++Y W +           Q H    ++ C   ++L AM+  I +    L +  +K+I+  +     +   N+                  +   P+     AYD ++  A  L R ++    SS   +     Y D      I   +  +NF G+TG V F      + +G +   Q++        +  +V  +N   + ++I  INDTI         D  + L+ ++   + LYS      I+  L  L +++A  F   N+K R  +LIKMSSP MN+ II G +L Y  +FL+GLD  F+S     + C V  +++++G+T  FG +F+KTWRV+ IF    K VK+    ++D+
Sbjct:  263 VFCCAYEENMYGSKYQWIIPGWYEPSWW-EQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR-----------------SGVGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF---RNGERMGTIKFTQFQD------SREVKVGEYNAVADTLEI--INDTIRFQGSEPPKDKTIILEQLRKISLPLYS------ILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIF----KNVKMKKKIIKDQ 595
The following BLAST results are available for this feature:
BLAST of TCONS_00037445-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABR27.529e-3026.61Gamma-aminobutyric acid type B receptor subunit 2 ... [more]
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