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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037436 ID=TCONS_00037436|Name=TCONS_00037436|organism=Clytia hemisphaerica|type=transcript|length=1473bp
atcgtccccagtggaaaattagtCTCCAACtgttgtccccactgaaaata
atcaaaaaaccAATTCTCATTGCAAAATTGTATGTCATTCTTCCAGTTCC
CACTGATTTTTTgacaatggaatttaaatccccagccataaaaatattGG
AACATTAATCCCCATCGTGATACAGTCCTTCACCCCCACTgtctgaaaaa
atcctaccgggtctgtgagaagggggtgtagttAATATATGGTATGGTAA
TATATGGTATATCTAAGTTACTTGAACTGTTTTTAACGTTCATCCTCTTT
AAAGGTGTCCATTCGATGTGTTCTCTTCTTAATTTGATGATGTAAAGCCC
TgggattttggtatttttgaacTCCCAGAGTTGTACCACATGGTTCCAAC
TAATCGAGTGCTTGTCCAGCTAAAAGGATGTCGCCTTTATGAATTTGGGC
GTATGAGAACGCTCTTCCGCGGCCCGAGAAAAGTTTGTCTGACGGATAGG
AAAAGGCAGTTTTTGATggaaatccaagatggcggctGTGGTTTCAGTCA
ACATATGAATTTGGTGCAAGAAGAGAacatttagtatatttatcaactCT
ATTCGACTCAAATCTCTGTCTCACTTCCCCATAGTTACATTTggagccct
cggagagattagCAAGAGATCGTTTGATGGTTTGAAGGTGAAAAGTTTCA
ATTTGTATGTGTTTGGTTATGTTTTGATGCTCAACACACAAGAACAATAA
CAAGAACAACTGTAAGAGAAAAATGACTTTTCGCCTATGAACTTATTTAA
AACGTGAAATGAAATTACTTGCTGAATGATTAAACAAAGTGAgaaagaag
ttttgttttgtttaccgATCGAAATGATAATGTTATGAAtgtttcaaaaa
actgatttggcTGTTTCGAACTGATCGCTAAGGgtagccattttgaattt
acgTAATAATTCTTGAAAACCCGCTACGATAACATTATGGAGATAATTCA
AGACGAGGCGGAACGCATTTTACGCAAATTGAATACTGCGGAGTTAAGAG
TGATCGGAGAGTTTCTCAAGGTACCGAAAGAATCGATCGAAGGTAAATCG
AAGTCGGAAGTTTTACGAGAAATCCAGGCAAATCTCGATGCCGTAGAGGA
AGATTACCAACGAACGGGTATTCTTCAAGCACTACCGATTCCCCCGATGC
ACAAAAAGGCGTACGAAAAATTATTTGCAGAATCGAACGAAGCACCCAAA
GCACCTATCAAAGTTGAAGTTGATTCAAAACCAAAGTCATTTGACATCGA
ATACTTTAAAcgtgatttcaaaatttctggaaTAATTGCTGATGGCACAC
CAAAAGCGCTTAATTATATCAACTTGTGTAGTCAAATCAACGATGGTAAA
AAGAAAGGATATTCCGAAACCGAAATTGTGGCAGCTATCAAAAAGAGCAT
TTCACCTGGAACAGGTTTACGAA Run BLAST on NCBI protein sequence of TCONS_00037436-protein >TCONS_00037436-protein ID=TCONS_00037436-protein|Name=TCONS_00037436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MEIIQDEAERILRKLNTAELRVIGEFLKVPKESIEGKSKSEVLREIQANL
DAVEEDYQRTGILQALPIPPMHKKAYEKLFAESNEAPKAPIKVEVDSKPK
SFDIEYFKRDFKISGIIADGTPKALNYINLCSQINDGKKKGYSETEIVAA
IKKSISPGTGLR Run BLAST on NCBI transcript from alignment at sc0001628:20282..21754 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037436 ID=TCONS_00037436|Name=TCONS_00037436|organism=Clytia hemisphaerica|type=transcript|length=1473bp|location=Sequence derived from alignment at sc0001628:20282..21754 (Clytia hemisphaerica)
TTCGTAAACCTGTTCCAGGTGAAATGCTCTTTTTGATAGCTGCCACAATT
TCGGTTTCGGAATATCCTTTCTTTTTACCATCGTTGATTTGACTACACAA
GTTGATATAATTAAGCGCTTTTGGTGTGCCATCAGCAATTAttccagaaa
ttttgaaatcacgTTTAAAGTATTCGATGTCAAATGACTTTGGTTTTGAA
TCAACTTCAACTTTGATAGGTGCTTTGGGTGCTTCGTTCGATTCTGCAAA
TAATTTTTCGTACGCCTTTTTGTGCATCGGGGGAATCGGTAGTGCTTGAA
GAATACCCGTTCGTTGGTAATCTTCCTCTACGGCATCGAGATTTGCCTGG
ATTTCTCGTAAAACTTCCGACTTCGATTTACCTTCGATCGATTCTTTCGG
TACCTTGAGAAACTCTCCGATCACTCTTAACTCCGCAGTATTCAATTTGC
GTAAAATGCGTTCCGCCTCGTCTTGAATTATCTCCATAATGTTATCGTAG
CGGGTTTTCAAGAATTATTAcgtaaattcaaaatggctacCCTTAGCGAT
CAGTTCGAAACAgccaaatcagttttttgaaacaTTCATAACATTATCAT
TTCGATcggtaaacaaaacaaaacttctttcTCACTTTGTTTAATCATTC
AGCAAGTAATTTCATTTCACGTTTTAAATAAGTTCATAGGCGAAAAGTCA
TTTTTCTCTTACAGTTGTTCTTGTTATTGTTCTTGTGTGTTGAGCATCAA
AACATAACCAAACACATACAAATTGAAACTTTTCACCTTCAAACCATCAA
ACGATCTCTTGctaatctctccgagggctccAAATGTAACTATGGGGAAG
TGAGACAGAGATTTGAGTCGAATAGagttgataaatatactaaatgtTCT
CTTCTTGCACCAAATTCATATGTTGACTGAAACCACagccgccatcttgg
atttccATCAAAAACTGCCTTTTCCTATCCGTCAGACAAACTTTTCTCGG
GCCGCGGAAGAGCGTTCTCATACGCCCAAATTCATAAAGGCGACATCCTT
TTAGCTGGACAAGCACTCGATTAGTTGGAACCATGTGGTACAACTCTGGG
AgttcaaaaataccaaaatcccAGGGCTTTACATCATCAAATTAAGAAGA
GAACACATCGAATGGACACCTTTAAAGAGGATGAACGTTAAAAACAGTTC
AAGTAACTTAGATATACCATATATTACCATACCATATATTaactacaccc
ccttctcacagacccggtaggattttttcagacAGTGGGGGTGAAGGACT
GTATCACGATGGGGATTAATGTTCCaatatttttatggctggggatttaa
attccattgtcAAAAAATCAGTGGGAACTGGAAGAATGACATACAATTTT
GCAATGAGAATTggttttttgattattttcagtggggacaacaGTTGGAG
actaattttccactggggacgat Coding sequence (CDS) from alignment at sc0001628:20282..21754 >TCONS_00037436 ID=TCONS_00037436|Name=TCONS_00037436|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0001628:20282..21754 (Clytia hemisphaerica)
TCGTAAACCTGTTCCAGGTGAAATGCTCTTTTTGATAGCTGCCACAATTT
CGGTTTCGGAATATCCTTTCTTTTTACCATCGTTGATTTGACTACACAAG
TTGATATAATTAAGCGCTTTTGGTGTGCCATCAGCAATTAttccagaaat
tttgaaatcacgTTTAAAGTATTCGATGTCAAATGACTTTGGTTTTGAAT
CAACTTCAACTTTGATAGGTGCTTTGGGTGCTTCGTTCGATTCTGCAAAT
AATTTTTCGTACGCCTTTTTGTGCATCGGGGGAATCGGTAGTGCTTGAAG
AATACCCGTTCGTTGGTAATCTTCCTCTACGGCATCGAGATTTGCCTGGA
TTTCTCGTAAAACTTCCGACTTCGATTTACCTTCGATCGATTCTTTCGGT
ACCTTGAGAAACTCTCCGATCACTCTTAACTCCGCAGTATTCAATTTGCG
TAAAATGCGTTCCGCCTCGTCTTGAATTATCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037436-exon-sc0001628-1491911889:20282..21754 | TCONS_00037436-exon-sc0001628-1491911889:20282..21754 | Clytia hemisphaerica | exon |
| TCONS_00037436-exon-sc0001628-1510915933:20282..21754 | TCONS_00037436-exon-sc0001628-1510915933:20282..21754 | Clytia hemisphaerica | exon |
| TCONS_00037436-exon-sc0001628-1575043694:20282..21754 | TCONS_00037436-exon-sc0001628-1575043694:20282..21754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001628 | supercontig | sc0001628:20282..21754 . |
Blast
The following BLAST results are available for this feature:
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