TCONS_00037403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037403
Unique NameTCONS_00037403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037403 ID=TCONS_00037403|Name=TCONS_00037403|organism=Clytia hemisphaerica|type=transcript|length=841bp
AGTCAGTTCCGCTAAAGAATCCTGCAAGTGCTATAAATAGATTTTTCTTC
CCGATGTTAACCGATTCGGATTAATATCGGTAATTATCCCCGATACCCAA
CGGCGGGAATCTAAAAATGGTAGAGAAGCTCCGGTGActaggaaatattt
ttctgaaaagtaaTACTGGTACATCCTCTACACTTGAACTACCTTGAACT
TTGTTAGCCGGTACCTGCTGTACAGCCACNACCCAACGGCGGGAATCTAA
AAATGGTAGAGAAGCTCCGGTGActaggaaatatttttctgaaaagtaaT
ACTGGTACATCCTCTACACTTGAACTTTGTTAGCCGGTACCTGCTGTACA
GCCATCTAATCAGAATCTAACAGCAAACAAATTGAAGAATTCTATCAGCA
TTCATCAATTATTTATCCAAGATCAGggGTTGGATGTTCAAGCATTGTCC
ACCATATGAAATGATAAACAACAGAAAGTGGCAGTATCCTATTCATAGAT
ATGCCATTTCGCTAGCATCGAAGAAGTAAAAAAAGATTTGTGGTGCCAAA
GATATTTATTGAATAAGAAATGCATGCAGCAAAGAGGGTGAAATATTGAC
AACAAGTATTGAGAAGGCGAAATCTTTACTTCAGAAGAATTATTATCCAC
CTTTGTTTTCCGTATCTTTACTTCAGAAGAATCATTATATATCTTCGTTT
TACGTACCGATCATTCCTAAAACCTTGGAAATAATTTTGAACCCTATTCC
GAGCAAGGAGATAACGATGAGTGAGACAAGAAGAATAAAGTAACAGATCA
GTTTGAAAGGACACTGAgatgcttttaaaattgcattgGNN
Run BLAST on NCBI

transcript from alignment at sc0001624:2024..6162-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037403 ID=TCONS_00037403|Name=TCONS_00037403|organism=Clytia hemisphaerica|type=transcript|length=4139bp|location=Sequence derived from alignment at sc0001624:2024..6162- (Clytia hemisphaerica)
AGTCAGTTCCGCTAAAGAATCCTGCAAGTGCTATAAATAGATTTTTCTTC
CCGATGTTAACCGATTCGGATTAATATCGGTAATTATCCCCGATACCCAA
CGGCGGGAATCTAAAAATGGTAGAGAAGCTCCGGTGACTAGGAAATATTT
TTCTGAAAAGTAATACTGGTACATCCTCTACACTTGAACTACCTTGAACT
TTGTTAGCCGGTACCTGCTGTACAGCCACNACCCAACGGCGGGAATCTAA
AAATGGTAGAGAAGCTCCGGTGACTAGGAAATATTTTTCTGAAAAGTAAT
ACTGGTACATCCTCTACACTTGAACTTTGTTAGCCGGTACCTGCTGTACA
GCCATCTAATCAGAATCTAACAGCAAACAAATTGAAGAATTCTATCAGCA
TTCATCAATTATTTATCCAAGATCAGGTATGATTCAGTTTCCCACTCAGT
CATTGATAACATAACAAAATGATGGCAAAAAACATCATCCTTTTCAGTCC
TTTTCTAGGTGGACCCTGCCCTTCCCTTCCACGTTCCCTTCCATTTTGGG
GAAAGTTAGTCAGCTTACTAGCTAAAAAGTTTGTTAAAGATTAATGGATG
CTCTTTGCTTACAAGCGAAGCAAAGTAAATTATATAAAGTGCTTGACTTT
TTGGCTTTGCTGAATGTGCCCGTCTATTGAGTGACTACTAGCATCACAAA
TACTAATCTCTACAATCTATGTAAATCATTTTTCTCTATGCAATAGCTGT
GTTGTAAGAGAAAAATCAATTAACATGGCATATATCATTTACAAAAAAAT
TTATGCTGATAGTAATTAGCTCATTCATTCAATTAGACCGTTGTAATCGC
CTACAAGCTACATATTATTTACTTGACTTTTAAAGCAAAGAATCTAGCAT
GACATCTAAAGGAATTAATGAAAACTAAAATGGTACTTTTTAATACAGTA
ATTTTTAATTATAAAGCACTACTGGCTGGGCATCTTATTATTGTATATGG
GCTCTTCCAGAAAAAAATTGATATAGGGGGTGGACGCCAGGAATTTTCAG
ATAAAAAAAGCACTCGGAAATCCAGTCAATTATTCAAAATGCTTCGGAAA
TTCCACTCAATTTTTTATTTGAACCGGCTTGCAAATTTCACATAATTTGT
CAAAATTTTGAAAAAAAGTATCTGAAATTCCAGATTTTTCTGCCAAAAAA
TTGATTTTGTATTGGAAATCTTCAATAGATGTATTGGCGAATGCAACAGT
CTTTTAAATAACTAATTACTCCACATACATTACTTTCCCTCAGCCAATAA
AAACATGATAAATTATCTTGTCTCTAGGTAACTGTTGTGGAGTAATTAGT
TATTCAAAAGACCGTAGCCTAAGCCAAAACAGCTATTGCTTTTGTATTGG
AAATCCAGGAATTTCAAAAAAACATTTTGCCTCAGAATTTTGCTGTCGTC
CACCCCCCTGTAATGGACTTTAACTGGAATTGAGCCCAAGAACAAATTTT
AGCTGTTGGTTGTTTGCATGACATTGTTCTCCCAAGAAATGAAATTCCAG
AAGGGGGCTATAATTTTTTTGCAATTTTGTAAGAAGTTTGATTTGAGTTG
TTGGACCTACCCCGGTGGGCTGTAGGTCCTATAAATTAACCTTTGTCCGT
CCTTCCGTCTGTCCGTCCGTTAGTTACCAGCTTTTCTCGAGATTGGCTCA
TTAGTTTTTTCTGATTTTTTGCACAATGATGGAAAACANTTGACTTTTAA
AGCAAAGAATCTAGCATGACATCTAAAGGAATTAATGAAAACTAAAATGG
TACTTTTTAATACAGTAATTTTTAATTATAAAGCACTACTGGCTGGGCAT
CTTATTATTGTATATGGGCTCTTCCAGAAAAAAATTGATATAGGGGGTGG
ACGCCAGGAATTTTCAGATAAAAAAAGCACTCGGAAATCCAGTCAATTAT
TCAAAATGCTTCGGAAATTCCACTCAATTTTTTATATGAACCGGCTTGCA
AATTTCACATAATTTGTCAAAATTTTGAAAAAAAGTATCTGAAATTCCAG
ATTTTTCTGCCAAAAAATTGATTTTGTATTGGAAATCTTCAATAGATGTA
TTGGCGAATGCAACAGTCTTTTAAATAACTAATTACTCCACATACATTAC
TTTCCCTCAGCCAATAAAAACATGATAAATTATCTTGTCTCTAGGTAACT
GTTGTGGAGTAATTAGTTATTCAAAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATGCGTATTAACAATGCCCAAAACATGGCCT
AGTCCAATTCTTGAGAAAAAATTTTTTCCGGCCGAAAATGCCGGAAATAT
GCCGGAAATCACCGTTTTTCTGGATTTTCATTGGATTTTTTCCATATAAT
TGGTTGTTTTTTTCATTCAAAAACATTATTAATAGCAATGCCCACCATCA
AGCATGTTTAAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTTTCTA
AAAATCGCCGGAACAGCCGATTTTCGCCGGAAAAACGGTATTTCTTGAAT
TTCTTGAGCTGTACTTTATATTTTTTCATGAAATTTTGCCCACTGATGCA
AAATGTCAATACCTAAATTGTGACGGAGCCCGATTTTCGAAAAAAATTCA
ATTCCGGCCGAAAATGCCGGAAATACGCCGGAAAAACTAGTTTTTCGGCA
TTTTCTCGCGATTTCATCATTAGTTTTTTCTGATTTTTTGCACACTGATG
CAAAATGTCAATACCTAAATTGTGACGGAGCCCGATTTTCGAAAAAAATT
CAATTCCGGCCGAAAATGCCGGAAATACGCCGGAAAAACTGGTTTTTCGG
CATTTTCTCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCTAAAAGA
TGCGTATTAACAATGCTCAAAACATGGCCTAGTCCGATTCTTGAGAAAAA
ATATTTTCCGGCCGAAAATGCCGAAAATATGCCGGAAATCGCCGTTTTTC
TGGATTTTCATTGGACTTTTTCCATATAATTGGTTATTTTTTCATTAAAA
TACATTATCAATAACAATGCCCACCATCAAGCATGTTTCAATTTTTAATA
AAATTGATTTTTGAAGCCGGGTTTTCTAAAAATCGCCGGAAGAGCTGATT
TTCGCCGGAAAAACCATATTTCTTGAATTTCTTGAGCTGTACTTTATATT
TTTTAATGAAATTTTGCACAATGATGCAATATGACAATACCTAAAATGTG
ACGGAGCCCGATTTTCGAAAAACAAATTTTTCCGGCCGAAAATGCCGGAA
ATATGTCGGAAAAATCGGTTTTTTGATATTTTCTCGAATTTTCATTTTTA
GTTTTTTTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCTCAAAAA
AAAATTTTCCGGTTGAAAATGCCGGAAATCGCCGTTTAGTTTACTTATAT
TTCTATGCTTTTCACACAAAAACATTATTCATAACAATGCTCACCATCAA
GCATGATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAACTTTATTA
TTTCCCTACAACCCTTCCCTCTCCCCCCATCAACAATCAATCATGAATTT
ATTGTGTTGTGTATTTTCGCTAAACACTATATTTTCTGACTGATTTTTTT
CAATTTTCTTTTCGCATTGCTATCTAACTTTAATCAGGTAGGTCCATTCA
GCATATTGCTTGTTTTTTTTCAAGGGGTTGGATGTTCAAGCATTGTCCAC
CATATGAAATGATAAACAACAGAAAGTGGCAGTATCCTATTCATAGATAT
GCCATTTCGCTAGCATCGAAGAAGTAAAAAAAGATTTGTGGTGCCAAAGA
TATTTATTGAATAAGAAATGCATGCAGCAAAGAGGGTGAAATATTGACAA
CAAGTATTGAGAAGGCGAAATCTTTACTTCAGAAGAATTATTATCCACCT
TTGTTTTCCGTATCTTTACTTCAGAAGAATCATTATATATCTTCGTTTTA
CGTACCGATCATTCCTAAAACCTTGGAAATAATTTTGAACCCTATTCCGA
GCAAGGAGATAACGATGAGTGAGACAAGAAGAATAAAGTAACAGATCAGT
TTGAAAGGACACTGAGATGCTTTTAAAATTGCATTGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022180XLOC_022180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037403-exon-sc0001624-1575043694:5737..6162TCONS_00037403-exon-sc0001624-1575043694:5737..6162Clytia hemisphaericaexon
TCONS_00037403-exon-sc0001624-1575043694:2024..2438TCONS_00037403-exon-sc0001624-1575043694:2024..2438Clytia hemisphaericaexon
TCONS_00037403-exon-sc0001624-1510915933:5737..6162TCONS_00037403-exon-sc0001624-1510915933:5737..6162Clytia hemisphaericaexon
TCONS_00037403-exon-sc0001624-1510915933:2024..2438TCONS_00037403-exon-sc0001624-1510915933:2024..2438Clytia hemisphaericaexon
TCONS_00037403-exon-sc0001624-1491911889:5737..6162TCONS_00037403-exon-sc0001624-1491911889:5737..6162Clytia hemisphaericaexon
TCONS_00037403-exon-sc0001624-1491911889:2024..2438TCONS_00037403-exon-sc0001624-1491911889:2024..2438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001624supercontigsc0001624:2024..6162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7826	12.4974	7.57465	7.03191	5.24524	4.71347	8.21689	7.38858	5.73835	5.26201	3.99675	3.15342	4.28215	3.09465	1.38817	3.23988	2.58325	2.48067	1.35097	1.5427	2.65394	1.9137	11.2063	9.01684	7.95146	9.16236	1.82502	1.62897	3.25694	3.81563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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