TCONS_00037397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037397
Unique NameTCONS_00037397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037397 ID=TCONS_00037397|Name=TCONS_00037397|organism=Clytia hemisphaerica|type=transcript|length=731bp
atttttcatcAACAACAAGAGACTGGTCAATACAATTAGCTTATCAAATC
AACATGTattggaaatgaaatttttcaaatgttgtGCAAAACATGAGATA
CCTGATCCGTTAAGGTGTAACTTTTTACTGGAAAGCATCTTACTGGTGAT
ATTCTCGTGCGAGATCAAGTGGAGATTGTATTTTTCACAACATTTACCGA
TAACCAAGTTAACACATTTGACTTTATCTGCCatctttttcttatcttta
ctATCTTCTCTGATCAACACTCCTGATATTATCCAAATTAACGTCGAAAT
CTCCTCCTGTGTTGCATCCATCACTTGTGATGTCGTTTTTGCCGACGTAT
AGAATAATGTGGTTTGGTTTCCTTTTAAGTATTGGTCGGGTGTGGTGTAA
CATATCATCACTATTTGCCCCAGGAAAGCTTTTCATGGAAACTTTAGCAT
TTGTATTAGAGAGCCCATTCCCAACAATGTTAATTGTTATTAAAAATACT
GTCTCCACAAACAATTGTTTCATCTCTTTTCATTTGAGCGCCCTTATTTT
TGTCAACAGCTATCCGAACTTTTTTGTCAGGCTTAGATACTTTCTTGTTC
ACATCATTTCTTGAGTTATAACCAATTCTCATTTTATCTCTAAAACTTGA
CAGTTGGTTTTGTATAGTGTATTCATTCGATTTGGGAATACTTTCAACAA
CACTTGAATCAAAAGGAATGTCATTTAGCAT
Run BLAST on NCBI

protein sequence of TCONS_00037397-protein

>TCONS_00037397-protein ID=TCONS_00037397-protein|Name=TCONS_00037397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MICYTTPDQYLKGNQTTLFYTSAKTTSQVMDATQEEISTLIWIISGVLIR
EDSKDKKKMADKVKCVNLVIGKCCEKYNLHLISHENITSKMLSSKKLHLN
GSGISCFAQHLKNFISNTC
Run BLAST on NCBI

transcript from alignment at sc0001623:16081..16811

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037397 ID=TCONS_00037397|Name=TCONS_00037397|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at sc0001623:16081..16811 (Clytia hemisphaerica)
ATGCTAAATGACATTCCTTTTGATTCAAGTGTTGTTGAAAGTATTCCCAA
ATCGAATGAATACACTATACAAAACCAACTGTCAAGTTTTAGAGATAAAA
TGAGAATTGGTTATAACTCAAGAAATGATGTGAACAAGAAAGTATCTAAG
CCTGACAAAAAAGTTCGGATAGCTGTTGACAAAAATAAGGGCGCTCAAAT
GAAAAGAGATGAAACAATTGTTTGTGGAGACAGTATTTTTAATAACAATT
AACATTGTTGGGAATGGGCTCTCTAATACAAATGCTAAAGTTTCCATGAA
AAGCTTTCCTGGGGCAAATAGTGATGATATGTTACACCACACCCGACCAA
TACTTAAAAGGAAACCAAACCACATTATTCTATACGTCGGCAAAAACGAC
ATCACAAGTGATGGATGCAACACAGGAGGAGATTTCGACGTTAATTTGGA
TAATATCAGGAGTGTTGATCAGAGAAGATagtaaagataagaaaaagatG
GCAGATAAAGTCAAATGTGTTAACTTGGTTATCGGTAAATGTTGTGAAAA
ATACAATCTCCACTTGATCTCGCACGAGAATATCACCAGTAAGATGCTTT
CCAGTAAAAAGTTACACCTTAACGGATCAGGTATCTCATGTTTTGCacaa
catttgaaaaatttcatttccaatACATGTTGATTTGATAAGCTAATTGT
ATTGACCAGTCTCTTGTTGTTgatgaaaaat

Coding sequence (CDS) from alignment at sc0001623:16081..16811

>TCONS_00037397 ID=TCONS_00037397|Name=TCONS_00037397|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0001623:16081..16811 (Clytia hemisphaerica)
ATGATATGTTACACCACACCCGACCAATACTTAAAAGGAAACCAAACCAC
ATTATTCTATACGTCGGCAAAAACGACATCACAAGTGATGGATGCAACAC
AGGAGGAGATTTCGACGTTAATTTGGATAATATCAGGAGTGTTGATCAGA
GAAGATagtaaagataagaaaaagatGGCAGATAAAGTCAAATGTGTTAA
CTTGGTTATCGGTAAATGTTGTGAAAAATACAATCTCCACTTGATCTCGC
ACGAGAATATCACCAGTAAGATGCTTTCCAGTAAAAAGTTACACCTTAAC
GGATCAGGTATCTCATGTTTTGCacaacatttgaaaaatttcatttccaa
tACATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022174XLOC_022174Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037397-proteinTCONS_00037397-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037397-exon-sc0001623-1491911889:16081..16811TCONS_00037397-exon-sc0001623-1491911889:16081..16811Clytia hemisphaericaexon
TCONS_00037397-exon-sc0001623-1510915933:16081..16811TCONS_00037397-exon-sc0001623-1510915933:16081..16811Clytia hemisphaericaexon
TCONS_00037397-exon-sc0001623-1575043694:16081..16811TCONS_00037397-exon-sc0001623-1575043694:16081..16811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001623supercontigsc0001623:16081..16811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.067965	0	0.153907	0.225861	1.0082	0.869121	0	0	0	0	0	0	0.0904028	0.0938842	0.0771856	0.0828319	0	0.889014	0.288993	0.226808	0.131425	0	0	0	0	0	0.186387	0.0994587	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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