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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037387 ID=TCONS_00037387|Name=TCONS_00037387|organism=Clytia hemisphaerica|type=transcript|length=2002bpRun BLAST on NCBI protein sequence of TCONS_00037387-protein >TCONS_00037387-protein ID=TCONS_00037387-protein|Name=TCONS_00037387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=667bp GCDESMAIGAAVDLYNAGVKAMIGPACSVCCLSAGLLSTSKQIPLISYSCRun BLAST on NCBI transcript from alignment at sc0001621:5378..15693- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037387 ID=TCONS_00037387|Name=TCONS_00037387|organism=Clytia hemisphaerica|type=transcript|length=10316bp|location=Sequence derived from alignment at sc0001621:5378..15693- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001621:5378..15693- >TCONS_00037387 ID=TCONS_00037387|Name=TCONS_00037387|organism=Clytia hemisphaerica|type=CDS|length=20010bp|location=Sequence derived from alignment at sc0001621:5378..15693- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00037387 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 3.941e-55 Identity = 185/695 (26.62%), Postives = 311/695 (44.75%), Query Frame = 1
Query: 4 CDESMAIGAAVDL-YNAGVKAMIGPACSVCCLSAGLLSTSKQIPLISYSCSSIELSNKDNYPYFARTKP-FARTGPWATRALTAITKRMNW-RQVCIIER------------VHEIYTLVSENLREEFLSQNYTVYRERFYYEDTTFQEKEEYLASLQDRCRVFFIVTDKGSLNEFLIHAYHRGLLTKEKGFAFLTIDFKIAFFEILPEHNVPGETDEDRVNFLHKHILQGLITVSAVRPTNQGNPKFAQFEQDVEKMKHMAPWDVLPYNESWPLRDPNAVNS--AYTYDTVWLVARAMDLILKENPNSTLNDPRLIYETVINTTFNGFTGPLHLDAQGDRIPDFHI-----SNLVDGVVVNLYEYS-PLTDAGELHSNITFVFPGNTTQIPLDVPVCGFHNEFCIVEEAEFNYLVIYVGVPIFVILLTFMGLYVHNKRKYEMSMLCKGLLIDSKEISFGLDNVETASF----RSRISAMSSATRDSGFINLRRLAK-----SKVVIWRGEKAFVKIIKKCKVDLTKMLLIKLKRLKDINHTNVNPFLGVFQQGHDFHILWNVCQKGSLQDVLQNEDIECDWTFRLSFINDIAKGLTEIFKNGGV--HGNLNSSNCLIDNRWVCKISNFGLTHFKSGIKTLPDNSYEAYKKQFWKAPE--HIIDYDLAPSKEGDIYSYGIILYEISVRDDPFHYE 1980
C ++ A AAVDL + +GP C G + ++PL++ ++ KD Y R P +A+ G + + A+ +R+ W RQ ++ V ++ V + L N TV F +D + + L ++ + RV +I + + ++ A GL ++ F L I + P P E D + + Q ++ P N P++ +F ++++KH+A Y + + VN+ A +D + L +A+ L T+ D I + + N +F G TG L +D+ GDR DF + N VV+N S L N +P P D+P CGF NE + + L + V L+ +G+ + + Y L K L + + + ++VE +S RS S ++ + R S + +L +K ++G VK + + +++LT+ +L +LK ++D+ + ++ F+G + IL C +GSLQD+L+NE I DW FR S NDI KG+ NG + HGNL SSNC++D R+V KI+++GL F+ P+ + Y K+ W APE + + S+ GD+YS+GIIL EI++R FH E
Sbjct: 92 CSDTAAPLAAVDLKWEHNPAVFLGPGCVYAAAPVGRFTAHWRVPLLTAGAPALGFGVKDEYALTTRAGPSYAKLGDF----VAALHRRLGWERQALMLYAYRPGDEEHCFFLVEGLFMRVRDRL-------NITVDHLEFAEDDLSHYTR--LLRTMPRKGRVIYICSSPDAFRTLMLLALEAGLCGEDYVFFHLDIFGQSLQGGQGPAPRRPWERG-DGQDVSARQAFQAAKIITYKDPDN---PEYLEF---LKQLKHLA------YEQFNFTMEDGLVNTIPASFHDGLLLYIQAVTETLAHG--GTVTDGENITQRMWNRSFQGVTGYLKIDSSGDRETDFSLWDMDPENGAFRVVLNYNGTSQELVAVSGRKLNWPLGYP------PPDIPKCGFDNEDPACNQDHLSTLEVLA----LVGSLSLLGILIVSFFIYRKMQLEKELASELWRVRW--EDVEPSSLERHLRSAGSRLTLSGRGSNYGSLLTTEGQFQVFAKTAYYKGNLVAVKRVNRKRIELTRKVLFELKHMRDVQNEHLTRFVGACTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGML-FLHNGAICSHGNLKSSNCVVDGRFVLKITDYGLESFRD---LDPEQGHTVYAKKLWTAPELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFHVE 742 The following BLAST results are available for this feature:
BLAST of TCONS_00037387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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