TCONS_00037375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037375
Unique NameTCONS_00037375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037375 ID=TCONS_00037375|Name=TCONS_00037375|organism=Clytia hemisphaerica|type=transcript|length=228bp
CGAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACCACT
GACAACTCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGACACT
TCTGAATTCAATAGGATCCTCTTTTATTCCCCTTACGGGTGCGGGAAGTC
TTTCATCCTTCAggaaaaagcaaaacaattgAGTGGAATGGCGCAATACA
AAGGACGTGTTATGTATGTCATTGAGAG
Run BLAST on NCBI

transcript from alignment at sc0001619:20990..21432-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037375 ID=TCONS_00037375|Name=TCONS_00037375|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0001619:20990..21432- (Clytia hemisphaerica)
CGAACTGGGTGGAGTATATCTCGCAAGCCATCGATACCGTCTGCACCACT
GACAACATACTCTTTTACAGTCAGCGTCAACTTCCCATCATGAAGACAGA
CACTTCTGAATTCGATAAGATCATTCTTTTGGCTCCCTACGGATGCGGAA
AGTCTTTCATCCTTCAGGAGAAAGCAAAGCAATTGAGTGGAATGGCGCAA
TACAAAGGACGTGTTATGTATGCCATTGAGACAAGTGATTNTCGATACCG
TCTGCACTACTGACAACATACTCTTTTACAGTCAGCGTCAACTTCCCATC
ATGAAGACAGACACTTCTGAATTCAATAGGATCCTCTTTTATTCCCCTTA
CGGGTGCGGGAAGTCTTTCATCCTTCAGGAAAAAGCAAAACAATTGAGTG
GAATGGCGCAATACAAAGGACGTGTTATGTATGTCATTGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022152XLOC_022152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037375-exon-sc0001619-1575043694:21377..21432TCONS_00037375-exon-sc0001619-1575043694:21377..21432Clytia hemisphaericaexon
TCONS_00037375-exon-sc0001619-1575043694:20990..21161TCONS_00037375-exon-sc0001619-1575043694:20990..21161Clytia hemisphaericaexon
TCONS_00037375-exon-sc0001619-1510915933:21377..21432TCONS_00037375-exon-sc0001619-1510915933:21377..21432Clytia hemisphaericaexon
TCONS_00037375-exon-sc0001619-1510915933:20990..21161TCONS_00037375-exon-sc0001619-1510915933:20990..21161Clytia hemisphaericaexon
TCONS_00037375-exon-sc0001619-1491911889:21377..21432TCONS_00037375-exon-sc0001619-1491911889:21377..21432Clytia hemisphaericaexon
TCONS_00037375-exon-sc0001619-1491911889:20990..21161TCONS_00037375-exon-sc0001619-1491911889:20990..21161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001619supercontigsc0001619:20990..21432 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.337173	2.32423	1.40205	2.62516	0.918967	2.27658	9.94366	0	6.52748	1.50641	5.57314	5.31629	3.27462	5.87366	9.27404	7.02908	2.10877	0	1.25038	0	2.3417	8.35965	4.48599	9.57514	12.104	13.1108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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